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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM246
Library AF
(Link to library)
Clone ID AFM246
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>AFM246 (AFM246Q) /CSM/AF/AFM2-B/AFM246Q.Seq.d/
XXXXXXXXXXAGATTAAACAATTCATTCTTGATGAATGTGATACCATGCTCGAATCATTG
GATATGAGAAAGGATGTACAAAAGATCTTCAAACTCATCCCAGCCAACAAACAAGTTATG
ATGTTTTCAGCTACCCTCTCTGATACCATTCGTCCAATCTGTAAGAAGTTTATGAACAAT
CCATTGGAAATCTACATCAATGATGGTAGTAAACTCACTCTCCATGGTCTTCAACAATAC
TACGTACCAATCACTGAAGAACAAAAGAATAAAAAACTCATTGAACTCTTGGATTCATTA
GACTTTAATCAAGCCGTTATTTTCGTCAAATCTGTTAGACGTGCTGATGCCTTAAATAAG
ATCCTCCAAGATATTGGTTTCCCATCCATCTGTATTCATCGTGACCTCGATCAAAAGGAT
CGTATCGAACAATACCGTAAATTCAAAAACTTTGAATCTCGTATCATGGTTGCCACTAAT
ATCTTTGGTCGTGGTATCGATATTGAACGTGTCAATGTCGTCATCAACTACGATATGGCT
GAATCTGCCGTNTCCCTNT
sequence update 2009. 4. 3
Translated Amino Acid sequence 
---IKQFILDECDTMLESLDMRKDVQKIFKLIPANKQVMMFSATLSDTIRPICKKFMNNP
LEIYINDGSKLTLHGLQQYYVPITEEQKNKKLIELLDSLDFNQAVIFVKSVRRADALNKI
LQDIGFPSICIHRDLDQKDRIEQYRKFKNFESRIMVATNIFGRGIDIERVNVVINYDMAE
SAVSL
Translated Amino Acid sequence (All Frames) 
Frame A:
---d*tihs**m*yhariigyekgctkdlqthpsqqtsydvfsypl*yhssnl*evyeqs
ignlhq*w**thspwsstilrtnh*rtke*kth*tlgfirl*ssryfrqic*tc*clk*d
pprywfpihlyss*prskgsyrtip*iqkl*isyhgch*ylwswyry*tcqcrhqlryg*
icrxp


Frame B:
---IKQFILDECDTMLESLDMRKDVQKIFKLIPANKQVMMFSATLSDTIRPICKKFMNNP
LEIYINDGSKLTLHGLQQYYVPITEEQKNKKLIELLDSLDFNQAVIFVKSVRRADALNKI
LQDIGFPSICIHRDLDQKDRIEQYRKFKNFESRIMVATNIFGRGIDIERVNVVINYDMAE
SAVSL


Frame C:
---lnnsflmnvipcsnhwi*ermykrssnssqptnkl*cfqlpslipfvqsvrsl*tih
wkstsmmvvnslsmvfnnttyqslknkriknslnswih*tlikplfssnlldvlmp*irs
skilvshpsvfivtsikrivsnntvnsktlnlvswlplislvvvsilnvsmsssttiwln
lpxpx
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFM246 (AFM246Q) /CSM/AF/AFM2-B/AFM246Q.Seq.d/                       1078   0.0
VFE359 (VFE359Q) /CSM/VF/VFE3-C/VFE359Q.Seq.d/                       1070   0.0
VFA314 (VFA314Q) /CSM/VF/VFA3-A/VFA314Q.Seq.d/                       1070   0.0
SFL133 (SFL133Q) /CSM/SF/SFL1-B/SFL133Q.Seq.d/                       1070   0.0
FC-AI06 (FC-AI06Q) /CSM/FC/FC-AI/FC-AI06Q.Seq.d/                     1070   0.0
CFK190 (CFK190Q) /CSM/CF/CFK1-D/CFK190Q.Seq.d/                       1070   0.0
CFJ109 (CFJ109Q) /CSM/CF/CFJ1-A/CFJ109Q.Seq.d/                       1070   0.0
AFN644 (AFN644Q) /CSM/AF/AFN6-B/AFN644Q.Seq.d/                       1070   0.0
AFM853 (AFM853Q) /CSM/AF/AFM8-C/AFM853Q.Seq.d/                       1070   0.0
AFM796 (AFM796Q) /CSM/AF/AFM7-D/AFM796Q.Seq.d/                       1070   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ346880) Dictyostelium discoideum cDNA clone:dda25k12, 3' ...  1078   0.0    1
(C23661) Dictyostelium discoideum gamete cDNA, clone FC-AI06.    1070   0.0    1
(BJ431010) Dictyostelium discoideum cDNA clone:ddv9f15, 3' e...  1070   0.0    1
(BJ428762) Dictyostelium discoideum cDNA clone:ddv1l03, 3' e...  1070   0.0    1
(BJ401431) Dictyostelium discoideum cDNA clone:dds23a09, 3' ...  1070   0.0    1
(BJ376254) Dictyostelium discoideum cDNA clone:ddc21c23, 3' ...  1070   0.0    1
(BJ375506) Dictyostelium discoideum cDNA clone:ddc19a03, 3' ...  1070   0.0    1
(BJ347392) Dictyostelium discoideum cDNA clone:dda26p23, 3' ...  1070   0.0    1
(BJ347273) Dictyostelium discoideum cDNA clone:dda26j14, 3' ...  1070   0.0    1
(BJ346754) Dictyostelium discoideum cDNA clone:dda24m24, 3' ...  1070   0.0    1
dna update 2009. 4.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(O13792) RecName: Full=ATP-dependent RNA helicase uap56;        ...   251   7e-66
D89270_1(D89270|pid:none) Schizosaccharomyces pombe mRNA, partia...   251   7e-66
AM920437_2400(AM920437|pid:none) Penicillium chrysogenum Wiscons...   247   1e-64
(A1DL85) RecName: Full=ATP-dependent RNA helicase sub2;         ...   247   1e-64
(A1CMQ7) RecName: Full=ATP-dependent RNA helicase sub2;         ...   247   1e-64
(Q1DI07) RecName: Full=ATP-dependent RNA helicase SUB2;         ...   247   2e-64
AJ010466_1(AJ010466|pid:none) Arabidopsis thaliana mRNA for DEAD...   247   2e-64
FM992691_22(FM992691|pid:none) Candida dubliniensis CD36 chromos...   246   2e-64
AJ428513_1(AJ428513|pid:none) Chironomus tentans mRNA for HEL pr...   246   4e-64
GM694469_1(GM694469|pid:none) Sequence 25 from Patent EP1953235.      246   4e-64
protein update 2009. 4. 5
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM246 is

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFM246Z
3' end seq. 
>AFM246Z.Seq
XXXXXXXXXXAGATTAAACAATTCATTCTTGATGAATGTGATACCATGCTCGAATCATTG
GATATGAGAAAGGATGTACAAAAGATCTTCAAACTCATCCCAGCCAACAAACAAGTTATG
ATGTTTTCAGCTACCCTCTCTGATACCATTCGTCCAATCTGTAAGAAGTTTATGAACAAT
CCATTGGAAATCTACATCAATGATGGTAGTAAACTCACTCTCCATGGTCTTCAACAATAC
TACGTACCAATCACTGAAGAACAAAAGAATAAAAAACTCATTGAACTCTTGGATTCATTA
GACTTTAATCAAGCCGTTATTTTCGTCAAATCTGTTAGACGTGCTGATGCCTTAAATAAG
ATCCTCCAAGATATTGGTTTCCCATCCATCTGTATTCATCGTGACCTCGATCAAAAGGAT
CGTATCGAACAATACCGTAAATTCAAAAACTTTGAATCTCGTATCATGGTTGCCACTAAT
ATCTTTGGTCGTGGTATCGATATTGAACGTGTCAATGTCGTCATCAACTACGATATGGCT
GAATCTGCCGTNTCCCTNT
Length of 3' end seq. 559
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -