AFM244
Library AF
(Link to library)
Clone ID AFM244
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFM244P
(Link to Original site)
Representative DNA sequence
>AFM244 (AFM244Q) /CSM/AF/AFM2-B/AFM244Q.Seq.d/
GATCAGTAAATACAATTGTTAACACATATAGAAATTTTAAAATTTTATCTTTATTTCTAA
AAAAAAATAACAATAACATATTGATAAAGTAAAATATGGTTAACCCTCAAGTAATTGGTT
ATATTGGTGCAGCAGTTGCATCATTATTTTTTGGTTCAAATTATGTTCCAGTAAAGAATT
ATCCAACAGGTAATGGTTTAGCATTTACATGGGTAATGAGTGTTGGTACATTAGTAGTTG
CATATTGTGCAATGTTTATATCAGAAGATTATATATTTGACCCATGGGGATTATTAGGTG
GTACATTATGGTCAATTGGTAATTTTTGCGTTATTCCAATTGTAAAAACCATTGGTATTG
GTCTTGGTTTATTGTTATGGTGTTGTTCAAGTATTATCACAGGTTATTTCACAGGTAAAT
TCGGATGGTTTGGAATAGACAAACAAAAGGTATCACATCCAGCATTAAATTGGATTGGTT
TCGCATGTATTGTAGCGGCTGTAATTTTCTTCTTTTTCATTGAACCTACAATCGAAGAGA
AAGACGAACATTCCTACTCATCAATTGTAGACXXXXXXXXXXGAACCTACAATCGAAGAG
AAAGACGAACATTCCTACTCATCAATTGTAGACGACTCGGAAATTGGTAATAACGGAATC
GACAACAATGGCTATAACTCAATTAATAACAACAACAATAATGGAAATAATAAACGTAGA
AGTGGGGCATTTAATAAGCAGCCAAAGAAATCCATTTTTGAGAGAATGCCACCACCATAT
AATACAATATTGGGCATAGTTTTATCAGTTTTCTCTGGTATTATGTATGGTGTTAATATG
GTACCAATGCAATTATGGAAACAAAGTAACGTGGATGCATCACCACTATCATTTGTATTT
TGTCATTTCTCTGGTATCTTTTTAGCAAATACCGCTGTGTTTATAGTTTATTCAATTATT
GTACGTCCACCACAAATTTTCCCACAAACTATTTTCCCTTCATTTTTCTCTGGTTTACTT
TGGGGTATTGCAAATGTTGGTCTAATGGTTGCAACTCAAAACTTGGGTTATACAATTGGT
TTTCCAATGGGTTCTGGTGGTCCAATGATTGTATCTTCACTTTGGAGTGTTTTTTATTTC
CGTGAAATTCAAGGTGTAAAAAATTTATTAATTTTATTAATATCATTTATATTCCTTGGT
GCTGGTATTACAATTTTAGCTTTATCTCACTAATAAATAATAATAGTAATAATAATAATA
ATAAAAATAAAATAAAACT
sequence update 2009. 4. 3
Translated Amino Acid sequence
svntivntyrnfkilslflkknnnnilik*NMVNPQVIGYIGAAVASLFFGSNYVPVKNY
PTGNGLAFTWVMSVGTLVVAYCAMFISEDYIFDPWGLLGGTLWSIGNFCVIPIVKTIGIG
LGLLLWCCSSIITGYFTGKFGWFGIDKQKVSHPALNWIGFACIVAAVIFFFFIEPTIEEK
DEHSYSSIVD---

---EPTIEEKDEHSYSSIVDDSEIGNNGIDNNGYNSINNNNNNGNNKRRSGAFNKQPKKS
IFERMPPPYNTILGIVLSVFSGIMYGVNMVPMQLWKQSNVDASPLSFVFCHFSGIFLANT
AVFIVYSIIVRPPQIFPQTIFPSFFSGLLWGIANVGLMVATQNLGYTIGFPMGSGGPMIV
SSLWSVFYFREIQGVKNLLILLISFIFLGAGITILALSH**iiiviiiiikik*n


Translated Amino Acid sequence (All Frames)
Frame A:
dq*iqllthieilkfylyf*kkitity**skiwltlk*lvilvqqlhhyflvqimfq*ri
iqqvmv*hlhg**vlvh**lhivqclyqkiiylthgdy*vvhygqlvifalfql*kplvl
vlvycygvvqvlsqvisqvnsdgle*tnkryhiqh*iglvshvl*rl*fssfslnlqskr
ktnipthql*---

---EPTIEEKDEHSYSSIVDDSEIGNNGIDNNGYNSINNNNNNGNNKRRSGAFNKQPKKS
IFERMPPPYNTILGIVLSVFSGIMYGVNMVPMQLWKQSNVDASPLSFVFCHFSGIFLANT
AVFIVYSIIVRPPQIFPQTIFPSFFSGLLWGIANVGLMVATQNLGYTIGFPMGSGGPMIV
SSLWSVFYFREIQGVKNLLILLISFIFLGAGITILALSH**iiiviiiiikik*n

Frame B:
iskync*hi*kf*nfifiskkk*q*hidkvkyg*pssnwlywcssciiifwfklcsskel
snr*wfsiymgnecwyisscilcnvyirrlyi*pmgiirwyimvnw*flrysncknhwyw
swfivmvlfkyyhrlfhr*irmvwnrqtkgitssikldwfrmycsgcnfllfh*tynrre
rrtfllincr---

---nlqskrktnipthql*ttrklvitesttmaitqlitttimeiinvevghlissqrnp
flrechhhiiqywa*fyqfslvlcmvliwyqcnygnkvtwmhhhyhlyfvislvsf*qip
lcl*fiqllyvhhkfshklfslhfslvyfgvlqmlv*wlqlktwviqlvfqwvlvvq*ly
lhfgvffisvkfkv*kiy*fy*yhlyslvlvlqf*lyltnk*********k*nkt

Frame C:
svntivntyrnfkilslflkknnnnilik*NMVNPQVIGYIGAAVASLFFGSNYVPVKNY
PTGNGLAFTWVMSVGTLVVAYCAMFISEDYIFDPWGLLGGTLWSIGNFCVIPIVKTIGIG
LGLLLWCCSSIITGYFTGKFGWFGIDKQKVSHPALNWIGFACIVAAVIFFFFIEPTIEEK
DEHSYSSIVD---

---tynrrerrtfllincrrlgnw**rnrqqwl*ln**qqq*wk**t*kwgi**aakeih
f*enatti*ynighsfisflwyyvwc*ygtnaimetk*rgcittiicilsflwylfskyr
cvyslfnyctsttnfptnyfpfiflwftlgyckcwsngcnsklglynwfsngfwwsndci
ftlecflfp*nsrckkfinfiniiyipwcwyynfsfislinnnsnnnnnknkik

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFM244 (AFM244Q) /CSM/AF/AFM2-B/AFM244Q.Seq.d/ 2325 0.0
VFM619 (VFM619Q) /CSM/VF/VFM6-A/VFM619Q.Seq.d/ 1285 0.0
CHD829 (CHD829Q) /CSM/CH/CHD8-B/CHD829Q.Seq.d/ 1285 0.0
SFI147 (SFI147Q) /CSM/SF/SFI1-B/SFI147Q.Seq.d/ 1269 0.0
VFJ672 (VFJ672Q) /CSM/VF/VFJ6-C/VFJ672Q.Seq.d/ 1257 0.0
VFJ877 (VFJ877Q) /CSM/VF/VFJ8-D/VFJ877Q.Seq.d/ 1235 0.0
SFL109 (SFL109Q) /CSM/SF/SFL1-A/SFL109Q.Seq.d/ 1227 0.0
VSJ867 (VSJ867Q) /CSM/VS/VSJ8-C/VSJ867Q.Seq.d/ 1051 0.0
SFB201 (SFB201Q) /CSM/SF/SFB2-A/SFB201Q.Seq.d/ 127 5e-28
VSC779 (VSC779Q) /CSM/VS/VSC7-D/VSC779Q.Seq.d/ 98 4e-19

own update 2009. 4. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ435095) Dictyostelium discoideum cDNA clone:ddv26e06, 3' ... 1283 0.0 1
(BJ346864) Dictyostelium discoideum cDNA clone:dda25g12, 3' ... 1283 0.0 1
(BJ376644) Dictyostelium discoideum cDNA clone:ddc29j08, 3' ... 1277 0.0 1
(BJ433074) Dictyostelium discoideum cDNA clone:ddv20o18, 3' ... 1255 0.0 1
(BJ402588) Dictyostelium discoideum cDNA clone:dds17m11, 3' ... 1227 0.0 2
(BJ433129) Dictyostelium discoideum cDNA clone:ddv20j20, 3' ... 1223 0.0 1
(BJ329530) Dictyostelium discoideum cDNA clone:dda25g12, 5' ... 1001 0.0 2
(BJ401354) Dictyostelium discoideum cDNA clone:dds23a03, 3' ... 848 0.0 2
(BJ416636) Dictyostelium discoideum cDNA clone:ddv26e06, 5' ... 993 0.0 2
(BJ414875) Dictyostelium discoideum cDNA clone:ddv20o18, 5' ... 993 0.0 2
dna update 2009. 4.10
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54V96) RecName: Full=Transmembrane protein 144 homolog 2; 357 6e-97
(Q55FV8) RecName: Full=Transmembrane protein 144 homolog 1; 188 4e-46
BC170487_1(BC170487|pid:none) Xenopus laevis hypothetical protei... 106 1e-21
AK002017_1(AK002017|pid:none) Homo sapiens cDNA FLJ11155 fis, cl... 104 6e-21
AX405887_1(AX405887|pid:none) Sequence 302 from Patent WO0222660. 104 6e-21
(Q7Z5S9) RecName: Full=Transmembrane protein 144; &BC054487_1(B... 104 6e-21
CR848486_1(CR848486|pid:none) Xenopus tropicalis finished cDNA, ... 95 4e-18
AF003141_1(AF003141|pid:none) Caenorhabditis elegans cosmid W02D... 94 8e-18
T22411(T22411) hypothetical protein F49C12.6 - Caenorhabditis el... 82 4e-14
AL021571_10(AL021571|pid:none) Caenorhabditis elegans Cosmid T19... 79 3e-13
protein update 2009. 4. 5
PSORT

psg: 0.00 gvh: 0.00 alm: 0.00 top: 0.00 tms: 0.00 mit: 0.00 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

100.0 %:

>> prediction for AFM244 is

5' end seq. ID AFM244F
5' end seq.
>AFM244F.Seq
GATCAGTAAATACAATTGTTAACACATATAGAAATTTTAAAATTTTATCTTTATTTCTAA
AAAAAAATAACAATAACATATTGATAAAGTAAAATATGGTTAACCCTCAAGTAATTGGTT
ATATTGGTGCAGCAGTTGCATCATTATTTTTTGGTTCAAATTATGTTCCAGTAAAGAATT
ATCCAACAGGTAATGGTTTAGCATTTACATGGGTAATGAGTGTTGGTACATTAGTAGTTG
CATATTGTGCAATGTTTATATCAGAAGATTATATATTTGACCCATGGGGATTATTAGGTG
GTACATTATGGTCAATTGGTAATTTTTGCGTTATTCCAATTGTAAAAACCATTGGTATTG
GTCTTGGTTTATTGTTATGGTGTTGTTCAAGTATTATCACAGGTTATTTCACAGGTAAAT
TCGGATGGTTTGGAATAGACAAACAAAAGGTATCACATCCAGCATTAAATTGGATTGGTT
TCGCATGTATTGTAGCGGCTGTAATTTTCTTCTTTTTCATTGAACCTACAATCGAAGAGA
AAGACGAACATTCCTACTCATCAATTGTAGACXXXXXXXXXX
Length of 5' end seq. 582
3' end seq. ID AFM244Z
3' end seq.
>AFM244Z.Seq
XXXXXXXXXXGAACCTACAATCGAAGAGAAAGACGAACATTCCTACTCATCAATTGTAGA
CGACTCGGAAATTGGTAATAACGGAATCGACAACAATGGCTATAACTCAATTAATAACAA
CAACAATAATGGAAATAATAAACGTAGAAGTGGGGCATTTAATAAGCAGCCAAAGAAATC
CATTTTTGAGAGAATGCCACCACCATATAATACAATATTGGGCATAGTTTTATCAGTTTT
CTCTGGTATTATGTATGGTGTTAATATGGTACCAATGCAATTATGGAAACAAAGTAACGT
GGATGCATCACCACTATCATTTGTATTTTGTCATTTCTCTGGTATCTTTTTAGCAAATAC
CGCTGTGTTTATAGTTTATTCAATTATTGTACGTCCACCACAAATTTTCCCACAAACTAT
TTTCCCTTCATTTTTCTCTGGTTTACTTTGGGGTATTGCAAATGTTGGTCTAATGGTTGC
AACTCAAAACTTGGGTTATACAATTGGTTTTCCAATGGGTTCTGGTGGTCCAATGATTGT
ATCTTCACTTTGGAGTGTTTTTTATTTCCGTGAAATTCAAGGTGTAAAAAATTTATTAAT
TTTATTAATATCATTTATATTCCTTGGTGCTGGTATTACAATTTTAGCTTTATCTCACTA
ATAAATAATAATAGTAATAATAATAATAATAAAAATAAAATAAAACT
Length of 3' end seq. 707
Connected seq. ID AFM244P
Connected seq.
>AFM244P.Seq
GATCAGTAAATACAATTGTTAACACATATAGAAATTTTAAAATTTTATCTTTATTTCTAA
AAAAAAATAACAATAACATATTGATAAAGTAAAATATGGTTAACCCTCAAGTAATTGGTT
ATATTGGTGCAGCAGTTGCATCATTATTTTTTGGTTCAAATTATGTTCCAGTAAAGAATT
ATCCAACAGGTAATGGTTTAGCATTTACATGGGTAATGAGTGTTGGTACATTAGTAGTTG
CATATTGTGCAATGTTTATATCAGAAGATTATATATTTGACCCATGGGGATTATTAGGTG
GTACATTATGGTCAATTGGTAATTTTTGCGTTATTCCAATTGTAAAAACCATTGGTATTG
GTCTTGGTTTATTGTTATGGTGTTGTTCAAGTATTATCACAGGTTATTTCACAGGTAAAT
TCGGATGGTTTGGAATAGACAAACAAAAGGTATCACATCCAGCATTAAATTGGATTGGTT
TCGCATGTATTGTAGCGGCTGTAATTTTCTTCTTTTTCATTGAACCTACAATCGAAGAGA
AAGACGAACATTCCTACTCATCAATTGTAGAC----------GAACCTACAATCGAAGAG
AAAGACGAACATTCCTACTCATCAATTGTAGACGACTCGGAAATTGGTAATAACGGAATC
GACAACAATGGCTATAACTCAATTAATAACAACAACAATAATGGAAATAATAAACGTAGA
AGTGGGGCATTTAATAAGCAGCCAAAGAAATCCATTTTTGAGAGAATGCCACCACCATAT
AATACAATATTGGGCATAGTTTTATCAGTTTTCTCTGGTATTATGTATGGTGTTAATATG
GTACCAATGCAATTATGGAAACAAAGTAACGTGGATGCATCACCACTATCATTTGTATTT
TGTCATTTCTCTGGTATCTTTTTAGCAAATACCGCTGTGTTTATAGTTTATTCAATTATT
GTACGTCCACCACAAATTTTCCCACAAACTATTTTCCCTTCATTTTTCTCTGGTTTACTT
TGGGGTATTGCAAATGTTGGTCTAATGGTTGCAACTCAAAACTTGGGTTATACAATTGGT
TTTCCAATGGGTTCTGGTGGTCCAATGATTGTATCTTCACTTTGGAGTGTTTTTTATTTC
CGTGAAATTCAAGGTGTAAAAAATTTATTAATTTTATTAATATCATTTATATTCCTTGGT
GCTGGTATTACAATTTTAGCTTTATCTCACTAATAAATAATAATAGTAATAATAATAATA
ATAAAAATAAAATAAAACT
Length of connected seq. 1269
Full length Seq ID -
Full length Seq. -
Length of full length seq. -