>VFC491 (VFC491Q) /CSM/VF/VFC4-D/VFC491Q.Seq.d/
ACTGTTGGCCTACTGGTGAAAACTTTTTAGAACTTTTAAAATCTTATAAAGAATTTAATT
CAACTGATCAATATCAAATTTGGAAAATTTTAATTACAAATCAAAAAGAATTATTAGATC
ATATTATACTTGGTATTGAAATTACTTTACCAGTAGATATTAATGGTGGTAATAACAATA
ATAATAATAGTAAGGTAAATAAAAATAATGAACCAATGCCATTGAAAAAAGTTGGTAGCC
AAGTTCAATTTGGTGGTGGTAGTGGTAAAATTAAATTTGAAGAAGAGATTGAAATTTATA
AGGATAGTGATTTATTACAATCATTTTGTTTGGATCCAACTTCACCAGAATTAAATGTTA
TGGCAATTGCAACCACTCGTGGTATTAGAGAGATTGATCATAAACAATTGGTTAGTGAAA
TTAGGGAAGAACATGATATAGATCCATCAGAGAATTTAATTAGTTCACCATCTTCAAGTA
GAGATAXXXXXXXXXXTGGCAACTGCCGGTATCAGTAGTAGTGATAGCAAATCTCGTGAT
ATCTGTCTATGGGATGTATTATTGCCACCTAATAAATCATTGATTGCCTCTTACACCGAT
CAAGAGAATGGCGCATCCTCAATTGTTTATTCTCCAAAACGTCAAACTATCATCGTTGGT
GGTAAGAAAGGTTCATTGTCACTCTACGATATTCGTACTCATAAACAATTGGAAAGTTTC
AAAGCTCATCATTTAAATACTAAATCATTGGCATTGGATCCATTCGAAGAGTTTGTTTGC
TCTGGTAGTAGTGATGGTAACATTAAGATTTGGTCCTTACCATCGATGACTTGTCTCAAT
ACCTTTGAAGATGCTCATAAAAAACAAACTTTTGTTCGTCCAACAGGTGTTTTCAAATCT
CCAGTTTCAACCTATGGTGTAATGCAAGTTAGATTAGAAAATAATGGTTTATT

CWPTGENFLELLKSYKEFNSTDQYQIWKILITNQKELLDHIILGIEITLPVDINGGNNNN
NNSKVNKNNEPMPLKKVGSQVQFGGGSGKIKFEEEIEIYKDSDLLQSFCLDPTSPELNVM
AIATTRGIREIDHKQLVSEIREEHDIDPSENLISSPSSSRD---

---ATAGISSSDSKSRDICLWDVLLPPNKSLIASYTDQENGASSIVYSPKRQTIIVGGKK
GSLSLYDIRTHKQLESFKAHHLNTKSLALDPFEEFVCSGSSDGNIKIWSLPSMTCLNTFE
DAHKKQTFVRPTGVFKSPVSTYGVMQVRLENNGL

Frame A:
tvgllvktf*nf*nliknliqlinikfgkf*lqikkny*iilylvlkllyq*ilmvviti
iiivr*ikimnqch*kklvakfnlvvvvvklnlkkrlkfiriviyynhfvwiqlhqn*ml
wqlqplvvlerliinnwlvklgknmi*ihqri*lvhhlqvei---

---wqlpvsvvvianlvisvygmyychlinh*lpltpikrmahpqlfilqnvklsslvvr
kvhchstifvlinnwkvsklii*ilnhwhwihskslfalvvvmvtlrfgpyhr*lvsipl
kmliknkllfvqqvfsnlqfqpmv*ckld*kimvy

Frame B:
llayw*klfrtfkil*ri*fn*sisnlenfnykskriirsyytwy*nyftsry*ww**q*
****gk*k**tnaieksw*pssiwww*w*n*i*rrd*nl*g**fitiilfgsnftrikcy
gncnhswy*rd*s*tig**n*grt*yrsirefn*ftifk*r---

---gncryq****qis*ylsmgciiat**iidcllhrsrewrilnclfsktsnyhrww*e
rfivtlrysys*tigkfqsssfky*iigigsirrvcllw***w*h*dlvltiddlsqyl*
rcs*ktnfcssnrcfqissfnlwcnas*irk*wfi

Frame C:
CWPTGENFLELLKSYKEFNSTDQYQIWKILITNQKELLDHIILGIEITLPVDINGGNNNN
NNSKVNKNNEPMPLKKVGSQVQFGGGSGKIKFEEEIEIYKDSDLLQSFCLDPTSPELNVM
AIATTRGIREIDHKQLVSEIREEHDIDPSENLISSPSSSRD---

---ATAGISSSDSKSRDICLWDVLLPPNKSLIASYTDQENGASSIVYSPKRQTIIVGGKK
GSLSLYDIRTHKQLESFKAHHLNTKSLALDPFEEFVCSGSSDGNIKIWSLPSMTCLNTFE
DAHKKQTFVRPTGVFKSPVSTYGVMQVRLENNGL

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFC491 (VFC491Q) /CSM/VF/VFC4-D/VFC491Q.Seq.d/                       1415   0.0
CFJ621 (CFJ621Q) /CSM/CF/CFJ6-A/CFJ621Q.Seq.d/                        906   0.0
VSB775 (VSB775Q) /CSM/VS/VSB7-D/VSB775Q.Seq.d/                        529   e-149
VHJ266 (VHJ266Q) /CSM/VH/VHJ2-C/VHJ266Q.Seq.d/                         44   0.004
VSD427 (VSD427Q) /CSM/VS/VSD4-B/VSD427Q.Seq.d/                         42   0.015
VFH675 (VFH675Q) /CSM/VF/VFH6-D/VFH675Q.Seq.d/                         42   0.015
SHB726 (SHB726Q) /CSM/SH/SHB7-B/SHB726Q.Seq.d/                         42   0.015
CHP865 (CHP865Q) /CSM/CH/CHP8-C/CHP865Q.Seq.d/                         42   0.015
AHM277 (AHM277Q) /CSM/AH/AHM2-D/AHM277Q.Seq.d/                         42   0.015
AFO381 (AFO381Q) /CSM/AF/AFO3-D/AFO381Q.Seq.d/                         42   0.015

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF076600|AF076600.1 Dictyostelium discoideum CpyA (cpyA) gene, partial cds.   906  0.0  3
BD249790|BD249790.1 Campylobacter glycolsyltransferases for biosynthesis of gangliosides and ganglioside mimics.    44  0.019  2
AR271699|AR271699.1 Sequence 1 from patent US 6503744.            44  0.019  2
AF215659|AF215659.1 Campylobacter jejuni lipooligosaccharide biosynthesis locus, partial sequence.    44  0.019  2
AF167344|AF167344.1 Campylobacter jejuni O:19 lipooligosaccharide biosynthesis locus, partial sequence.    44  0.019  2
AF130984|AF130984.1 Campylobacter jejuni lipooligosaccharide biosynthesis locus, partial sequence.    44  0.019  2
AY297047|AY297047.1 Campylobacter jejuni HB93-13 wlaII LOS biosynthesis gene cluster, partial sequence.    44  0.021  2
AE014821|AE014821.1 Plasmodium falciparum 3D7 chromosome 14 section 6 of 13 of the complete sequence.    38  0.33  7
AC115592|AC115592.2 Dictyostelium discoideum chromosome 2 map 1-125959 strain AX4, complete sequence.    36  0.38  7
AC115607|AC115607.2 Dictyostelium discoideum chromosome 2 map 4559693-4624405 strain AX4, complete sequence.    38  0.66  5

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF076600_1(AF076600|pid:none) Dictyostelium discoideum CpyA (cpy...   306   7e-82
AK050888_1(AK050888|pid:none) Mus musculus 9 days embryo whole b...   124   5e-27
BC140781_1(BC140781|pid:none) Homo sapiens Dmx-like 2, mRNA (cDN...   120   9e-26
BC022050_1(BC022050|pid:none) Homo sapiens Dmx-like 2, mRNA (cDN...   120   9e-26
AB020663_1(AB020663|pid:none) Homo sapiens mRNA for KIAA0856 pro...   120   9e-26
(Q8TDJ6) RecName: Full=DmX-like protein 2; AltName: Full=Rabconn...   117   4e-25
BX908722_5(BX908722|pid:none) Zebrafish DNA sequence from clone ...   117   8e-25
(Q8BPN8) RecName: Full=DmX-like protein 2; AltName: Full=Rabconn...   115   2e-24
CT010507_4(CT010507|pid:none) Mouse DNA sequence from clone RP23...   115   2e-24
AB385168_1(AB385168|pid:none) Synthetic construct DNA, clone: pF...   115   2e-24

 psg: 0.75  gvh: 0.41  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for VFC491 is cyt

>VFC491F.Seq
ACTGTTGGCCTACTGGTGAAAACTTTTTAGAACTTTTAAAATCTTATAAAGAATTTAATT
CAACTGATCAATATCAAATTTGGAAAATTTTAATTACAAATCAAAAAGAATTATTAGATC
ATATTATACTTGGTATTGAAATTACTTTACCAGTAGATATTAATGGTGGTAATAACAATA
ATAATAATAGTAAGGTAAATAAAAATAATGAACCAATGCCATTGAAAAAAGTTGGTAGCC
AAGTTCAATTTGGTGGTGGTAGTGGTAAAATTAAATTTGAAGAAGAGATTGAAATTTATA
AGGATAGTGATTTATTACAATCATTTTGTTTGGATCCAACTTCACCAGAATTAAATGTTA
TGGCAATTGCAACCACTCGTGGTATTAGAGAGATTGATCATAAACAATTGGTTAGTGAAA
TTAGGGAAGAACATGATATAGATCCATCAGAGAATTTAATTAGTTCACCATCTTCAAGTA
GAGATA----------

>VFC491Z.Seq
----------TGGCAACTGCCGGTATCAGTAGTAGTGATAGCAAATCTCGTGATATCTGT
CTATGGGATGTATTATTGCCACCTAATAAATCATTGATTGCCTCTTACACCGATCAAGAG
AATGGCGCATCCTCAATTGTTTATTCTCCAAAACGTCAAACTATCATCGTTGGTGGTAAG
AAAGGTTCATTGTCACTCTACGATATTCGTACTCATAAACAATTGGAAAGTTTCAAAGCT
CATCATTTAAATACTAAATCATTGGCATTGGATCCATTCGAAGAGTTTGTTTGCTCTGGT
AGTAGTGATGGTAACATTAAGATTTGGTCCTTACCATCGATGACTTGTCTCAATACCTTT
GAAGATGCTCATAAAAAACAAACTTTTGTTCGTCCAACAGGTGTTTTCAAATCTCCAGTT
TCAACCTATGGTGTAATGCAAGTTAGATTAGAAAATAATGGTTTATT

>VFC491P.Seq
ACTGTTGGCCTACTGGTGAAAACTTTTTAGAACTTTTAAAATCTTATAAAGAATTTAATT
CAACTGATCAATATCAAATTTGGAAAATTTTAATTACAAATCAAAAAGAATTATTAGATC
ATATTATACTTGGTATTGAAATTACTTTACCAGTAGATATTAATGGTGGTAATAACAATA
ATAATAATAGTAAGGTAAATAAAAATAATGAACCAATGCCATTGAAAAAAGTTGGTAGCC
AAGTTCAATTTGGTGGTGGTAGTGGTAAAATTAAATTTGAAGAAGAGATTGAAATTTATA
AGGATAGTGATTTATTACAATCATTTTGTTTGGATCCAACTTCACCAGAATTAAATGTTA
TGGCAATTGCAACCACTCGTGGTATTAGAGAGATTGATCATAAACAATTGGTTAGTGAAA
TTAGGGAAGAACATGATATAGATCCATCAGAGAATTTAATTAGTTCACCATCTTCAAGTA
GAGATA----------TGGCAACTGCCGGTATCAGTAGTAGTGATAGCAAATCTCGTGAT
ATCTGTCTATGGGATGTATTATTGCCACCTAATAAATCATTGATTGCCTCTTACACCGAT
CAAGAGAATGGCGCATCCTCAATTGTTTATTCTCCAAAACGTCAAACTATCATCGTTGGT
GGTAAGAAAGGTTCATTGTCACTCTACGATATTCGTACTCATAAACAATTGGAAAGTTTC
AAAGCTCATCATTTAAATACTAAATCATTGGCATTGGATCCATTCGAAGAGTTTGTTTGC
TCTGGTAGTAGTGATGGTAACATTAAGATTTGGTCCTTACCATCGATGACTTGTCTCAAT
ACCTTTGAAGATGCTCATAAAAAACAAACTTTTGTTCGTCCAACAGGTGTTTTCAAATCT
CCAGTTTCAACCTATGGTGTAATGCAAGTTAGATTAGAAAATAATGGTTTATT