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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM241
Library AF
(Link to library)
Clone ID AFM241
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFM241P
(Link to Original site)
Representative DNA sequence 
>AFM241 (AFM241Q) /CSM/AF/AFM2-B/AFM241Q.Seq.d/
ATTGTCATAATAATATTATAAAATTCAAAGATGTCTAAAGTAGTCCGTAGTAGTAAATAT
CGTCATGTTTTTGCAGCACAACCAAAAAAAGAAGAGTGCTATCAAAACTTAAAAGTTACC
AAATCAGCATGGGATAGTAATTACGTTGCAGCCAACACTAGATACTTTGGTGTTATTTGG
GATGCTGCAGGTGGTGGTTCATTCGCTGTTATTCCACATGAGGCTTCAGGTAAAACCACA
TCAGTTCCATTATTCAATGGTCATAAGAGTGCAGTTTTAGATATTGCTTTCCACCCATTC
AATGAAAACCTCGTTGGTTCAGTTTCTGAAGATTGTAACATTTGTATTTGGGGTATCCCA
GAAGGTGGTTTAACCGACTCAATCTCAACCCCACTCCAAACTTTATCTGGTCACAAGAGA
AAGGTTGGTACCATCTCATTCAATCCAGTTGCTGATAATGTTGCCGTTACCTCATCTGGT
GATTTCTTAGTTAAAACTTGGGGATGTTGAACAAGGTAAGAATTTAACCACTGTTGAAGG
TCACTCTGATATGATCACTTCATGCGAATGGAATCACAATGGTAGCCAAATCGTTACCAC
CTGTAAAGATXXXXXXXXXXAGCAGAGCCATCTTTGCCAAAGATAAGGTTATCACCGTTG
GTTTCTCAAAGACCTCTGAAAGAGAACTCCACATTTATGATCCACGTGCTTTCACCACCC
CACTCTCTGCTCAAGTCGTCGATTCTGCCTCTGGTCTCTTAATGCCATTCTATGATGCTG
ACAATTCAATTTTATACCTTGCTGGTAAAGGTGATGGTAACATCAGATACTACGAATTGG
TCGATGAATCACCATACATTCATTTCTTAAGTGAATTCAAATCTGCCACCCCACAAAGAG
GTCTTTGCTTCTTACCAAAGAGATGTCTCAACACCTCTGAATGTGAAATCGCTAGAGGTC
TCAAAGTTACTCCATTCACCGTTGAACCAATCTCATTCCGTGTACCAAGAAAATCTGATA
TCTTCCAAGACGATATCTACCCAGATACCTACGCTGGTGAACCATCACTCACTGCCGAAC
AATGGGTTTCAGGTACCAATGCTGAACCAAAGACTGTTAGTTTAGCTGGTGGTTTTGTCA
AAAAAGCTTCAGCTGTTGAATTCAAACCAGTCGTTCAAGTTCAAGAAGGTCCAAAGAATG
AAAAAGAACTCCGTGAAGAATACGAAAAATTAAAGATTCGTGTTGCTTACTTAGAATCTG
AAATCGTTAAAAAGGATGCCAAAATCAAAGAACTCACCAACTAAATTAATAATTTTCATT
CTTAAAT
sequence update 2009. 4. 3
Translated Amino Acid sequence 
ls**yykiqrclk*svvvnivmflqhnqkkksaikt*klpnqhgivitlqptldtlvlfg
mlqvvvhsllfhmrlqvkphqfhysmvirvqf*illsthsmktslvqflkivtfvfgvsq
kvv*ptqsqphsklylvtrerlvpshsiqllimlplphlvis*LKLGDVEQGKNLTTVEG
HSDMITSCEWNHNGSQIVTTCKD---

---SRAIFAKDKVITVGFSKTSERELHIYDPRAFTTPLSAQVVDSASGLLMPFYDADNSI
LYLAGKGDGNIRYYELVDESPYIHFLSEFKSATPQRGLCFLPKRCLNTSECEIARGLKVT
PFTVEPISFRVPRKSDIFQDDIYPDTYAGEPSLTAEQWVSGTNAEPKTVSLAGGFVKKAS
AVEFKPVVQVQEGPKNEKELREEYEKLKIRVAYLESEIVKKDAKIKELTN*innfhs*
Translated Amino Acid sequence (All Frames) 
Frame A:
iviiil*nskmskvvrsskyrhvfaaqpkkeecyqnlkvtksawdsnyvaantryfgviw
daagggsfavipheasgkttsvplfnghksavldiafhpfnenlvgsvsedcniciwgip
eggltdsistplqtlsghkrkvgtisfnpvadnvavtssgdflvktwgc*tr*efnhc*r
sl*ydhfmrmesqw*pnryhl*r---

---SRAIFAKDKVITVGFSKTSERELHIYDPRAFTTPLSAQVVDSASGLLMPFYDADNSI
LYLAGKGDGNIRYYELVDESPYIHFLSEFKSATPQRGLCFLPKRCLNTSECEIARGLKVT
PFTVEPISFRVPRKSDIFQDDIYPDTYAGEPSLTAEQWVSGTNAEPKTVSLAGGFVKKAS
AVEFKPVVQVQEGPKNEKELREEYEKLKIRVAYLESEIVKKDAKIKELTN*innfhs*

Frame B:
ls**yykiqrclk*svvvnivmflqhnqkkksaikt*klpnqhgivitlqptldtlvlfg
mlqvvvhsllfhmrlqvkphqfhysmvirvqf*illsthsmktslvqflkivtfvfgvsq
kvv*ptqsqphsklylvtrerlvpshsiqllimlplphlvis*LKLGDVEQGKNLTTVEG
HSDMITSCEWNHNGSQIVTTCKD---

---aepslpkirlsplvsqrplkenstfmihvlspphsllkssilplvs*chsmmltiqf
ytllvkvmvtsdttnwsmnhhtfis*vnsnlpphkevfasyqrdvstplnvkslevskll
hsplnqshsvyqenlissktistqiptlvnhhslpnngfqvpmlnqrllv*lvvlskklq
llnsnqsfkfkkvqrmkknsvkntkn*rfvllt*nlkslkrmpksknsptkliifilk

Frame C:
chnniikfkdv*ssp***isscfcsttkkrrvlsklksyqismg**lrcsqh*ilwcylg
ccrwwfircyst*gfr*nhissiiqws*ecsfrycfppiq*kprwfsf*rl*hlylgypr
rwfnrlnlnptpnfiwsqekgwyhliqssc**ccryliw*fls*nlgmlnkvri*pllkv
tli*slhangitmvakslppvk---

---qshlcqr*gyhrwflkdl*krtphl*stcfhhptlcssrrfclwslnail*c*qfnf
ipcw*r*w*hqilrigr*itihsflk*iqichptkrsllltkemsqhl*m*nr*rsqsys
ihr*tnlipctkki*ylprrylprylrw*tithcrtmgfryqc*tkdc*fswwfcqksfs
c*iqtsrsssrrske*krtp*rirkikdsccllri*nr*kgcqnqrthqln**fsfln
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFM241 (AFM241Q) /CSM/AF/AFM2-B/AFM241Q.Seq.d/                       2529   0.0
SLH850 (SLH850Q) /CSM/SL/SLH8-C/SLH850Q.Seq.d/                       1402   0.0
SLA132 (SLA132Q) /CSM/SL/SLA1-B/SLA132Q.Seq.d/                       1402   0.0
SFF787 (SFF787Q) /CSM/SF/SFF7-D/SFF787Q.Seq.d/                       1402   0.0
CFC402 (CFC402Q) /CSM/CF/CFC4-A/CFC402Q.Seq.d/                       1402   0.0
AFL726 (AFL726Q) /CSM/AF/AFL7-B/AFL726Q.Seq.d/                       1402   0.0
AFH478 (AFH478Q) /CSM/AF/AFH4-D/AFH478Q.Seq.d/                       1402   0.0
AFF275 (AFF275Q) /CSM/AF/AFF2-D/AFF275Q.Seq.d/                       1402   0.0
AFF203 (AFF203Q) /CSM/AF/AFF2-A/AFF203Q.Seq.d/                       1402   0.0
AFE648 (AFE648Q) /CSM/AF/AFE6-B/AFE648Q.Seq.d/                       1402   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU052156) Dictyostelium discoideum slug cDNA, clone SLA132.     1402   0.0    1
(AU039474) Dictyostelium discoideum slug cDNA, clone SLH850.     1402   0.0    1
(BJ398561) Dictyostelium discoideum cDNA clone:dds12n21, 3' ...  1402   0.0    1
(BJ373842) Dictyostelium discoideum cDNA clone:ddc5d02, 3' e...  1402   0.0    1
(BJ346839) Dictyostelium discoideum cDNA clone:dda25a12, 3' ...  1402   0.0    1
(BJ346542) Dictyostelium discoideum cDNA clone:dda24d07, 3' ...  1402   0.0    1
(BJ343025) Dictyostelium discoideum cDNA clone:dda15l20, 3' ...  1402   0.0    1
(BJ340137) Dictyostelium discoideum cDNA clone:dda11e20, 3' ...  1402   0.0    1
(BJ339940) Dictyostelium discoideum cDNA clone:dda11e02, 3' ...  1402   0.0    1
(BJ339805) Dictyostelium discoideum cDNA clone:dda10o12, 3' ...  1402   0.0    1
dna update 2009. 4.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S18663(S18663) coronin - slime mold (Dictyostelium discoideum)  ...   418   0.0
AY525781_1(AY525781|pid:none) Acanthamoeba healyi coronin mRNA, ...   215   e-108
BC075371_1(BC075371|pid:none) Xenopus tropicalis coronin, actin ...   186   5e-90
BC133331_1(BC133331|pid:none) Bos taurus coronin, actin binding ...   191   1e-86
AB209909_1(AB209909|pid:none) Homo sapiens mRNA for coronin, act...   190   2e-86
AM849477_1(AM849477|pid:none) Homo sapiens mRNA for Coronin-1C_i...   190   2e-86
AK023205_1(AK023205|pid:none) Homo sapiens cDNA FLJ13143 fis, cl...   190   3e-86
AF143957_1(AF143957|pid:none) Mus musculus coronin-3 mRNA, compl...   190   4e-86
BC087553_1(BC087553|pid:none) Mus musculus coronin, actin bindin...   190   1e-85
AK169404_1(AK169404|pid:none) Mus musculus 17 days pregnant adul...   190   1e-85
protein update 2009. 4. 5
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM241 is

5' end seq. ID AFM241F
5' end seq. 
>AFM241F.Seq
ATTGTCATAATAATATTATAAAATTCAAAGATGTCTAAAGTAGTCCGTAGTAGTAAATAT
CGTCATGTTTTTGCAGCACAACCAAAAAAAGAAGAGTGCTATCAAAACTTAAAAGTTACC
AAATCAGCATGGGATAGTAATTACGTTGCAGCCAACACTAGATACTTTGGTGTTATTTGG
GATGCTGCAGGTGGTGGTTCATTCGCTGTTATTCCACATGAGGCTTCAGGTAAAACCACA
TCAGTTCCATTATTCAATGGTCATAAGAGTGCAGTTTTAGATATTGCTTTCCACCCATTC
AATGAAAACCTCGTTGGTTCAGTTTCTGAAGATTGTAACATTTGTATTTGGGGTATCCCA
GAAGGTGGTTTAACCGACTCAATCTCAACCCCACTCCAAACTTTATCTGGTCACAAGAGA
AAGGTTGGTACCATCTCATTCAATCCAGTTGCTGATAATGTTGCCGTTACCTCATCTGGT
GATTTCTTAGTTAAAACTTGGGGATGTTGAACAAGGTAAGAATTTAACCACTGTTGAAGG
TCACTCTGATATGATCACTTCATGCGAATGGAATCACAATGGTAGCCAAATCGTTACCAC
CTGTAAAGATXXXXXXXXXX
Length of 5' end seq. 620
3' end seq. ID AFM241Z
3' end seq. 
>AFM241Z.Seq
XXXXXXXXXXAGCAGAGCCATCTTTGCCAAAGATAAGGTTATCACCGTTGGTTTCTCAAA
GACCTCTGAAAGAGAACTCCACATTTATGATCCACGTGCTTTCACCACCCCACTCTCTGC
TCAAGTCGTCGATTCTGCCTCTGGTCTCTTAATGCCATTCTATGATGCTGACAATTCAAT
TTTATACCTTGCTGGTAAAGGTGATGGTAACATCAGATACTACGAATTGGTCGATGAATC
ACCATACATTCATTTCTTAAGTGAATTCAAATCTGCCACCCCACAAAGAGGTCTTTGCTT
CTTACCAAAGAGATGTCTCAACACCTCTGAATGTGAAATCGCTAGAGGTCTCAAAGTTAC
TCCATTCACCGTTGAACCAATCTCATTCCGTGTACCAAGAAAATCTGATATCTTCCAAGA
CGATATCTACCCAGATACCTACGCTGGTGAACCATCACTCACTGCCGAACAATGGGTTTC
AGGTACCAATGCTGAACCAAAGACTGTTAGTTTAGCTGGTGGTTTTGTCAAAAAAGCTTC
AGCTGTTGAATTCAAACCAGTCGTTCAAGTTCAAGAAGGTCCAAAGAATGAAAAAGAACT
CCGTGAAGAATACGAAAAATTAAAGATTCGTGTTGCTTACTTAGAATCTGAAATCGTTAA
AAAGGATGCCAAAATCAAAGAACTCACCAACTAAATTAATAATTTTCATTCTTAAAT
Length of 3' end seq. 717
Connected seq. ID AFM241P
Connected seq. 
>AFM241P.Seq
ATTGTCATAATAATATTATAAAATTCAAAGATGTCTAAAGTAGTCCGTAGTAGTAAATAT
CGTCATGTTTTTGCAGCACAACCAAAAAAAGAAGAGTGCTATCAAAACTTAAAAGTTACC
AAATCAGCATGGGATAGTAATTACGTTGCAGCCAACACTAGATACTTTGGTGTTATTTGG
GATGCTGCAGGTGGTGGTTCATTCGCTGTTATTCCACATGAGGCTTCAGGTAAAACCACA
TCAGTTCCATTATTCAATGGTCATAAGAGTGCAGTTTTAGATATTGCTTTCCACCCATTC
AATGAAAACCTCGTTGGTTCAGTTTCTGAAGATTGTAACATTTGTATTTGGGGTATCCCA
GAAGGTGGTTTAACCGACTCAATCTCAACCCCACTCCAAACTTTATCTGGTCACAAGAGA
AAGGTTGGTACCATCTCATTCAATCCAGTTGCTGATAATGTTGCCGTTACCTCATCTGGT
GATTTCTTAGTTAAAACTTGGGGATGTTGAACAAGGTAAGAATTTAACCACTGTTGAAGG
TCACTCTGATATGATCACTTCATGCGAATGGAATCACAATGGTAGCCAAATCGTTACCAC
CTGTAAAGAT----------AGCAGAGCCATCTTTGCCAAAGATAAGGTTATCACCGTTG
GTTTCTCAAAGACCTCTGAAAGAGAACTCCACATTTATGATCCACGTGCTTTCACCACCC
CACTCTCTGCTCAAGTCGTCGATTCTGCCTCTGGTCTCTTAATGCCATTCTATGATGCTG
ACAATTCAATTTTATACCTTGCTGGTAAAGGTGATGGTAACATCAGATACTACGAATTGG
TCGATGAATCACCATACATTCATTTCTTAAGTGAATTCAAATCTGCCACCCCACAAAGAG
GTCTTTGCTTCTTACCAAAGAGATGTCTCAACACCTCTGAATGTGAAATCGCTAGAGGTC
TCAAAGTTACTCCATTCACCGTTGAACCAATCTCATTCCGTGTACCAAGAAAATCTGATA
TCTTCCAAGACGATATCTACCCAGATACCTACGCTGGTGAACCATCACTCACTGCCGAAC
AATGGGTTTCAGGTACCAATGCTGAACCAAAGACTGTTAGTTTAGCTGGTGGTTTTGTCA
AAAAAGCTTCAGCTGTTGAATTCAAACCAGTCGTTCAAGTTCAAGAAGGTCCAAAGAATG
AAAAAGAACTCCGTGAAGAATACGAAAAATTAAAGATTCGTGTTGCTTACTTAGAATCTG
AAATCGTTAAAAAGGATGCCAAAATCAAAGAACTCACCAACTAAATTAATAATTTTCATT
CTTAAAT
Length of connected seq. 1317
Full length Seq ID -
Full length Seq. -
Length of full length seq. -