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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM240
Library AF
(Link to library)
Clone ID AFM240
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFM240P
(Link to Original site)
Representative DNA sequence 
>AFM240 (AFM240Q) /CSM/AF/AFM2-B/AFM240Q.Seq.d/
TATTAAAAAAATGTACTCAGAAATTATTGAAGATGAGGGGATGTATACATCTCCAAGAAA
AAGAGATAATAATAATGATGATAAAGTTAGTTTAATTAATAAAGATAGTATTAGAAATAG
TAATGACAGTATTTCATCGTCATCATCATCGTCATCAAATGATGATGATCATAATGTACC
AATAAATCCATCAGTAGAATTAGAATTTGAACAATATATCAATAATCATAGAGGCAAGAA
CGTTCATCGTAGAAATGTTAAAGCCGATGAACTTAGATCAGTTTTAGAAAGTACAAGAAT
GGATGATGAATTTATAAAATCCTCAAGTAAGAAATCACGTAAATTCTATGAAAGACAAAA
CGAATTAATCGAATCAATTCTTGAACCAATTGAATTATTAGATCATGGTAAGGAGGAAGA
AGAGGATTTTAAAGTTAAGGTTGCAATCACCGGTTCCCTATGTGTAAATTGTTTATTATT
TTGTCTACAAATTTCAGCAGCATTCGTCACAGGATCACGTGCATTAATTGCAACATCAGT
AGACGCATTCATGGATTTACTCAGTGGTTTCATTTTATTCATGACAGATCGTTATAGAAA
GAAAAAGAATTTCATACTTTACCCAACTXXXXXXXXXXTGAACAAATTCAATTATTAGTT
GGTAAATCAGCATCACCAGAATTCCTTCAANAATTAACTTTTATAGCTTTAACTCATCAT
CCTGAAGTACTTAAAGTTGATACTTGTAGAGCATTCCATGTTGGTAATAATTTATATGTT
GAAGTTGATATAGTCTTACCACCATCAATGCCATTGGTTCAAACTCATGATATTGGTGAA
TCACTTCAAGAGCAAATTAGCAATCATTATCAGNATGTTGAATAGAGACTTTTGTTCATG
TNGTATTAGCAATATAAAC
sequence update 2009. 4. 3
Translated Amino Acid sequence 
IKKMYSEIIEDEGMYTSPRKRDNNNDDKVSLINKDSIRNSNDSISSSSSSSSNDDDHNVP
INPSVELEFEQYINNHRGKNVHRRNVKADELRSVLESTRMDDEFIKSSSKKSRKFYERQN
ELIESILEPIELLDHGKEEEEDFKVKVAITGSLCVNCLLFCLQISAAFVTGSRALIATSV
DAFMDLLSGFILFMTDRYRKKKNFILYPT---

---EQIQLLVGKSASPEFLQXLTFIALTHHPEVLKVDTCRAFHVGNNLYVEVDIVLPPSM
PLVQTHDIGESLQEQISNHYQXVE*rllfmxy*qyk
Translated Amino Acid sequence (All Frames) 
Frame A:
y*knvlrny*r*gdvyiskkkr******s*fn**r*y*k***qyfiviiivik***s*ct
nksisriri*tiyq*s*rqerss*kc*sr*t*isfrkykng**iykilk*eit*il*ktk
rinrins*tn*iirsw*ggrrgf*s*gcnhrfpmcklfiilstnfssirhritcincnis
rrihgftqwfhfihdrsl*kekefhtlpn---

---*tnsiisw*isitripsxinfysfnsss*st*s*yl*sipcw**fic*s*yslttin
aigsns*yw*itsran*qslsxc*ietfvhvvlai*

Frame B:
IKKMYSEIIEDEGMYTSPRKRDNNNDDKVSLINKDSIRNSNDSISSSSSSSSNDDDHNVP
INPSVELEFEQYINNHRGKNVHRRNVKADELRSVLESTRMDDEFIKSSSKKSRKFYERQN
ELIESILEPIELLDHGKEEEEDFKVKVAITGSLCVNCLLFCLQISAAFVTGSRALIATSV
DAFMDLLSGFILFMTDRYRKKKNFILYPT---

---EQIQLLVGKSASPEFLQXLTFIALTHHPEVLKVDTCRAFHVGNNLYVEVDIVLPPSM
PLVQTHDIGESLQEQISNHYQXVE*rllfmxy*qyk

Frame C:
lkkctqkllkmrgcihlqekeiiimmiklv*likivleivmtvfhrhhhrhqmmmiimyq
*ihq*n*nlnnisiiieartfivemlkpmnldqf*kvqewmmnl*npqvrnhvnsmkdkt
n*snqflnqlny*imvrrkkrilklrlqspvpyv*ivyyfvykfqqhssqdhvh*lqhq*
thswiysvvsfys*qivierkrisyftq---

---nkfny*lvnqhhqnsfxn*ll*l*liilkylklilvehsmlviiymlkli*syhhqc
hwfklmilvnhfksklaiiixmlnrdfcscxisnin
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFM240 (AFM240Q) /CSM/AF/AFM2-B/AFM240Q.Seq.d/                       1723   0.0
AFG186 (AFG186Q) /CSM/AF/AFG1-D/AFG186Q.Seq.d/                       1223   0.0
SFK666 (SFK666Q) /CSM/SF/SFK6-C/SFK666Q.Seq.d/                       1221   0.0
AFA732 (AFA732Q) /CSM/AF/AFA7-B/AFA732Q.Seq.d/                       1217   0.0
AFA617 (AFA617Q) /CSM/AF/AFA6-A/AFA617Q.Seq.d/                       1215   0.0
AFL320 (AFL320Q) /CSM/AF/AFL3-A/AFL320Q.Seq.d/                       1211   0.0
VFJ381 (VFJ381Q) /CSM/VF/VFJ3-D/VFJ381Q.Seq.d/                       1154   0.0
VFH619 (VFH619Q) /CSM/VF/VFH6-A/VFH619Q.Seq.d/                       1148   0.0
CFH740 (CFH740Q) /CSM/CF/CFH7-B/CFH740Q.Seq.d/                       1102   0.0
AFK811 (AFK811Q) /CSM/AF/AFK8-A/AFK811Q.Seq.d/                       1098   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ329551) Dictyostelium discoideum cDNA clone:dda25o10, 5' ...  1223   0.0    1
(BJ390464) Dictyostelium discoideum cDNA clone:dds22c18, 5' ...  1221   0.0    1
(BJ325331) Dictyostelium discoideum cDNA clone:dda13k21, 5' ...  1221   0.0    1
(BJ325819) Dictyostelium discoideum cDNA clone:dda2p07, 5' e...  1217   0.0    1
(BJ325731) Dictyostelium discoideum cDNA clone:dda2a06, 5' e...  1217   0.0    1
(BJ328138) Dictyostelium discoideum cDNA clone:dda23h05, 5' ...  1211   0.0    1
(BJ414592) Dictyostelium discoideum cDNA clone:ddv19b21, 5' ...  1154   0.0    1
(BJ413514) Dictyostelium discoideum cDNA clone:ddv16e06, 5' ...  1144   0.0    1
(BJ361261) Dictyostelium discoideum cDNA clone:ddc16p09, 5' ...  1102   0.0    1
(BJ327871) Dictyostelium discoideum cDNA clone:dda22f04, 5' ...  1098   0.0    1
dna update 2009. 4.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AP003231_3(AP003231|pid:none) Oryza sativa Japonica Group genomi...    89   2e-16
EF677555_1(EF677555|pid:none) Picea sitchensis clone WS02770_I19...    89   3e-16
EF453693_1(EF453693|pid:none) Populus trichocarpa Mn-specific ca...    89   3e-16
AC004218_11(AC004218|pid:none) Arabidopsis thaliana chromosome 2...    86   1e-15
CU633895_143(CU633895|pid:none) Podospora anserina genomic DNA c...    84   5e-15
AP008211_1392(AP008211|pid:none) Oryza sativa (japonica cultivar...    84   5e-15
CP000583_274(CP000583|pid:none) Ostreococcus lucimarinus CCE9901...    83   1e-14
CR954203_270(CR954203|pid:none) Ostreococcus tauri strain OTTH05...    82   3e-14
AK061853_1(AK061853|pid:none) Oryza sativa Japonica Group cDNA c...    81   5e-14
AK227391_1(AK227391|pid:none) Arabidopsis thaliana mRNA for hypo...    79   2e-13
protein update 2009. 4. 5
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM240 is

5' end seq. ID AFM240F
5' end seq. 
>AFM240F.Seq
TATTAAAAAAATGTACTCAGAAATTATTGAAGATGAGGGGATGTATACATCTCCAAGAAA
AAGAGATAATAATAATGATGATAAAGTTAGTTTAATTAATAAAGATAGTATTAGAAATAG
TAATGACAGTATTTCATCGTCATCATCATCGTCATCAAATGATGATGATCATAATGTACC
AATAAATCCATCAGTAGAATTAGAATTTGAACAATATATCAATAATCATAGAGGCAAGAA
CGTTCATCGTAGAAATGTTAAAGCCGATGAACTTAGATCAGTTTTAGAAAGTACAAGAAT
GGATGATGAATTTATAAAATCCTCAAGTAAGAAATCACGTAAATTCTATGAAAGACAAAA
CGAATTAATCGAATCAATTCTTGAACCAATTGAATTATTAGATCATGGTAAGGAGGAAGA
AGAGGATTTTAAAGTTAAGGTTGCAATCACCGGTTCCCTATGTGTAAATTGTTTATTATT
TTGTCTACAAATTTCAGCAGCATTCGTCACAGGATCACGTGCATTAATTGCAACATCAGT
AGACGCATTCATGGATTTACTCAGTGGTTTCATTTTATTCATGACAGATCGTTATAGAAA
GAAAAAGAATTTCATACTTTACCCAACTXXXXXXXXXX
Length of 5' end seq. 638
3' end seq. ID AFM240Z
3' end seq. 
>AFM240Z.Seq
XXXXXXXXXXTGAACAAATTCAATTATTAGTTGGTAAATCAGCATCACCAGAATTCCTTC
AANAATTAACTTTTATAGCTTTAACTCATCATCCTGAAGTACTTAAAGTTGATACTTGTA
GAGCATTCCATGTTGGTAATAATTTATATGTTGAAGTTGATATAGTCTTACCACCATCAA
TGCCATTGGTTCAAACTCATGATATTGGTGAATCACTTCAAGAGCAAATTAGCAATCATT
ATCAGNATGTTGAATAGAGACTTTTGTTCATGTNGTATTAGCAATATAAAC
Length of 3' end seq. 291
Connected seq. ID AFM240P
Connected seq. 
>AFM240P.Seq
TATTAAAAAAATGTACTCAGAAATTATTGAAGATGAGGGGATGTATACATCTCCAAGAAA
AAGAGATAATAATAATGATGATAAAGTTAGTTTAATTAATAAAGATAGTATTAGAAATAG
TAATGACAGTATTTCATCGTCATCATCATCGTCATCAAATGATGATGATCATAATGTACC
AATAAATCCATCAGTAGAATTAGAATTTGAACAATATATCAATAATCATAGAGGCAAGAA
CGTTCATCGTAGAAATGTTAAAGCCGATGAACTTAGATCAGTTTTAGAAAGTACAAGAAT
GGATGATGAATTTATAAAATCCTCAAGTAAGAAATCACGTAAATTCTATGAAAGACAAAA
CGAATTAATCGAATCAATTCTTGAACCAATTGAATTATTAGATCATGGTAAGGAGGAAGA
AGAGGATTTTAAAGTTAAGGTTGCAATCACCGGTTCCCTATGTGTAAATTGTTTATTATT
TTGTCTACAAATTTCAGCAGCATTCGTCACAGGATCACGTGCATTAATTGCAACATCAGT
AGACGCATTCATGGATTTACTCAGTGGTTTCATTTTATTCATGACAGATCGTTATAGAAA
GAAAAAGAATTTCATACTTTACCCAACT----------TGAACAAATTCAATTATTAGTT
GGTAAATCAGCATCACCAGAATTCCTTCAANAATTAACTTTTATAGCTTTAACTCATCAT
CCTGAAGTACTTAAAGTTGATACTTGTAGAGCATTCCATGTTGGTAATAATTTATATGTT
GAAGTTGATATAGTCTTACCACCATCAATGCCATTGGTTCAAACTCATGATATTGGTGAA
TCACTTCAAGAGCAAATTAGCAATCATTATCAGNATGTTGAATAGAGACTTTTGTTCATG
TNGTATTAGCAATATAAAC
Length of connected seq. 909
Full length Seq ID -
Full length Seq. -
Length of full length seq. -