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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFC434
Library VF
(Link to library)
Clone ID VFC434
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15664-1
Original site URL
Representative seq. ID VFC434P
(Link to Original site)
Representative DNA sequence 
>VFC434 (VFC434Q) /CSM/VF/VFC4-B/VFC434Q.Seq.d/
ACTGTTGGCCTACTGGNAAAAAAAAATAAAAAAAATTTAATTTAATTTATATAAATCTCA
CATTACATTTTTTTTTATTTATCATTTGTTATATAAAATNCCNCAAAAAAAAATAAAAAA
AAAAXXXXXXXXXXAATTATCCCACTTGAAAATCATAAAGCAATGGTACAATTAGAAACA
CCAGCAGGTATGGGTATTCAAAATTTTAAGAATTCAGTTGCAATTTTTGTACCACGTGAT
AGATATCGTCCAATTAAATCAACAAGTCAATTATTGGTTGCACAATCAAATATTTTCCAA
TTTGATCATGGTCAAGTTAAATTAAATTCAAAGAGAGAAGGTCAAGATGTACCACTTGTT
AAATTGGGTGAAGAATTTTCAACAGTTTCAGATTATGAAAAGAGATTTAAATCAATTCCA
GATTTATTGGAATTGGATCATCTTACTGTTTCTGGTGATGTTTACTTTGGTTCAAGAATT
ACTCTTAAAGGTACAGTCATTATTGTAGCTAATCATGGTGAACGTGTTGATATTNCCAGA
TGGTGTGGTTTTAGAAAATAAAGTA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
llaywxkkikki*FNLYKSHITFFFIYHLLYKXPQKKIKKK---

---IIPLENHKAMVQLETPAGMGIQNFKNSVAIFVPRDRYRPIKSTSQLLVAQSNIFQFD
HGQVKLNSKREGQDVPLVKLGEEFSTVSDYEKRFKSIPDLLELDHLTVSGDVYFGSRITL
KGTVIIVANHGERVDIXRWCGFRK*s
Translated Amino Acid sequence (All Frames) 
Frame A:
tvgllxkknkknli*fi*ishyiffylsfvi*nxxkknkkk---

---nypt*ks*sngtirntsrygyskf*efscnfctt**issn*inksiigctikyfpi*
swss*ikfkerrsrcttc*ig*rifnsfrl*kei*insrfigigssycfw*cllwfknys
*ryshycs*sw*tc*yxqmvwf*kik

Frame B:
llaywxkkikki*FNLYKSHITFFFIYHLLYKXPQKKIKKK---

---IIPLENHKAMVQLETPAGMGIQNFKNSVAIFVPRDRYRPIKSTSQLLVAQSNIFQFD
HGQVKLNSKREGQDVPLVKLGEEFSTVSDYEKRFKSIPDLLELDHLTVSGDVYFGSRITL
KGTVIIVANHGERVDIXRWCGFRK*s

Frame C:
cwptgkkk*kkfnliyinltlhfflfiicyikxxkkk*kk---

---lshlkiikqwyn*khqqvwvfkilriqlqflyhvidivqlnqqvnywlhnqifsnli
mvkln*iqrekvkmyhllnwvknfqqfqimkrdlnqfqiywnwiillflvmftlvqelll
kvqsll*limvnvlixpdgvvlenkv
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFC434 (VFC434Q) /CSM/VF/VFC4-B/VFC434Q.Seq.d/                        848   0.0
AFA127 (AFA127Q) /CSM/AF/AFA1-B/AFA127Q.Seq.d/                        835   0.0
CFD113 (CFD113Q) /CSM/CF/CFD1-A/CFD113Q.Seq.d/                        831   0.0
VFL461 (VFL461Q) /CSM/VF/VFL4-C/VFL461Q.Seq.d/                        825   0.0
VFK853 (VFK853Q) /CSM/VF/VFK8-C/VFK853Q.Seq.d/                        825   0.0
SSK668 (SSK668Q) /CSM/SS/SSK6-C/SSK668Q.Seq.d/                        825   0.0
SSI236 (SSI236Q) /CSM/SS/SSI2-B/SSI236Q.Seq.d/                        825   0.0
SSH420 (SSH420Q) /CSM/SS/SSH4-A/SSH420Q.Seq.d/                        825   0.0
SSF238 (SSF238Q) /CSM/SS/SSF2-B/SSF238Q.Seq.d/                        825   0.0
SSE519 (SSE519Q) /CSM/SS/SSE5-A/SSE519Q.Seq.d/                        825   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

Y00145|Y00145.1 Dictyostelium discoideum UDP glucose pyrophosphorylase gene (UDPGP;  EC 2.7.7.9).   773  0.0  4
M27639|M27639.1 Dictyostelium discoideum UDP-glucose pyrophosphorylase (UDPGP1) gene, 5' flank.    64  2e-13  2
M30467|M30467.1 D.discoideum uridine diphosphoglucose pyrophosphorylase (UDPGP1) gene, 5' end.    64  4e-13  2
AF150929|AF150929.1 Dictyostelium discoideum UDP-glucose pyrophosphorylase 2 (UDPGP2) mRNA, complete cds.    50  1e-05  3
BI322718|BI322718.1 kx15d03.y3 Parastrongyloides trichosuri IL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to TR:Q9XUS6 Q9XUS6 K08E3.5A PROTEIN. [1] ;, mRNA sequence.    36  0.018  2
BI743473|BI743473.1 kx44f12.y1 Parastrongyloides trichosuri FL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to TR:Q9XUS6 Q9XUS6 K08E3.5A PROTEIN. [1] ;, mRNA sequence.    36  0.19  2
BF249948|BF249948.1 pa88g07.y1 Hawdon Ancylostoma caninum L3 Ancylostoma caninum cDNA 5' similar to TR:Q9XUS6 Q9XUS6 K08E3.5A PROTEIN. [1] ;, mRNA sequence.    46  0.46  1
BQ666262|BQ666262.1 pb38g03.y1 Anc caninum L3 serum stim pAMP1 v1 Chiapelli McCarter Ancylostoma caninum cDNA 5' similar to TR:Q9XUS6 Q9XUS6 K08E3.5A PROTEIN. [1] ;, mRNA sequence.    46  0.46  1
AC123731|AC123731.4 Mus musculus clone RP23-458N23, WORKING DRAFT SEQUENCE, 5 unordered pieces.    40  0.75  3
BI742772|BI742772.1 kx34h07.y1 Parastrongyloides trichosuri IL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to TR:Q9XUS6 Q9XUS6 K08E3.5A PROTEIN. [1] ;, mRNA sequence.    36  0.84  2
dna update 2003. 9.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P08800) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer...   261   3e-69
BC026626_1(BC026626|pid:none) Mus musculus UDP-glucose pyrophosp...   152   5e-36
S35692(S35692)UTP-glucose-1-phosphate uridylyltransferase (EC 2....   152   5e-36
(Q91ZJ5) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer...   152   5e-36
S62599(S62599)UTP-glucose-1-phosphate uridylyltransferase (EC 2....   152   5e-36
AK153885_1(AK153885|pid:none) Mus musculus 2 days neonate thymus...   152   5e-36
AK300731_1(AK300731|pid:none) Homo sapiens cDNA FLJ56155 complet...   152   5e-36
BC084711_1(BC084711|pid:none) Rattus norvegicus UDP-glucose pyro...   152   5e-36
AF534111_1(AF534111|pid:none) Gallus gallus UDP-glucose pyrophos...   152   5e-36
(Q07130) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer...   152   5e-36
protein update 2009. 6.17
PSORT 

 psg: 0.92  gvh: 0.32  alm: 0.40  top: 0.50  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 20.0 %: nuclear
	  8.0 %: mitochondrial
	  8.0 %: plasma membrane
	  4.0 %: cytoskeletal

>> prediction for VFC434 is cyt
5' end seq. ID VFC434F
5' end seq. 
>VFC434F.Seq
ACTGTTGGCCTACTGGNAAAAAAAAATAAAAAAAATTTAATTTAATTTATATAAATCTCA
CATTACATTTTTTTTTATTTATCATTTGTTATATAAAATNCCNCAAAAAAAAATAAAAAA
AAAA----------
Length of 5' end seq. 124
3' end seq. ID VFC434Z
3' end seq. 
>VFC434Z.Seq
----------AATTATCCCACTTGAAAATCATAAAGCAATGGTACAATTAGAAACACCAG
CAGGTATGGGTATTCAAAATTTTAAGAATTCAGTTGCAATTTTTGTACCACGTGATAGAT
ATCGTCCAATTAAATCAACAAGTCAATTATTGGTTGCACAATCAAATATTTTCCAATTTG
ATCATGGTCAAGTTAAATTAAATTCAAAGAGAGAAGGTCAAGATGTACCACTTGTTAAAT
TGGGTGAAGAATTTTCAACAGTTTCAGATTATGAAAAGAGATTTAAATCAATTCCAGATT
TATTGGAATTGGATCATCTTACTGTTTCTGGTGATGTTTACTTTGGTTCAAGAATTACTC
TTAAAGGTACAGTCATTATTGTAGCTAATCATGGTGAACGTGTTGATATTNCCAGATGGT
GTGGTTTTAGAAAATAAAGTA
Length of 3' end seq. 431
Connected seq. ID VFC434P
Connected seq. 
>VFC434P.Seq
ACTGTTGGCCTACTGGNAAAAAAAAATAAAAAAAATTTAATTTAATTTATATAAATCTCA
CATTACATTTTTTTTTATTTATCATTTGTTATATAAAATNCCNCAAAAAAAAATAAAAAA
AAAA----------AATTATCCCACTTGAAAATCATAAAGCAATGGTACAATTAGAAACA
CCAGCAGGTATGGGTATTCAAAATTTTAAGAATTCAGTTGCAATTTTTGTACCACGTGAT
AGATATCGTCCAATTAAATCAACAAGTCAATTATTGGTTGCACAATCAAATATTTTCCAA
TTTGATCATGGTCAAGTTAAATTAAATTCAAAGAGAGAAGGTCAAGATGTACCACTTGTT
AAATTGGGTGAAGAATTTTCAACAGTTTCAGATTATGAAAAGAGATTTAAATCAATTCCA
GATTTATTGGAATTGGATCATCTTACTGTTTCTGGTGATGTTTACTTTGGTTCAAGAATT
ACTCTTAAAGGTACAGTCATTATTGTAGCTAATCATGGTGAACGTGTTGATATTNCCAGA
TGGTGTGGTTTTAGAAAATAAAGTA
Length of connected seq. 555
Full length Seq ID -
Full length Seq. -
Length of full length seq. -