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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM237
Library AF
(Link to library)
Clone ID AFM237
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFM237P
(Link to Original site)
Representative DNA sequence 
>AFM237 (AFM237Q) /CSM/AF/AFM2-B/AFM237Q.Seq.d/
ATATTTACATATTTTTAAAAAATGGCAACAATTGAAGATACTTNAAAGATAATAACAATC
CAATTTTAGAACGTAAAAAAGCTCCAAATAGATTATTTGTAGAAGAAGCAATTAATGATG
ATAATTCAGTAGTTACATTAAATCCAGAGACAATGGATCAATTACAATTCTTTAGAGGTG
ACACACTTTTAATTAAAGGTAAAAAGAGAAGAGATACCGTTTGTATTGTATTGTCAGATC
CAACCATCGATCCATCAAAGATCCGTATGAATAAAGTTGTAAGAAATAATCTTCGTGTTA
GATTAGGTGACATGATTTCAGTTCACCAATGTTCAGATGTTAAATATGGCAAACGTATTC
ATGTGTTACCAATTGATGATACCATAGAAGGTCTCAGTGGCAATCTCTTTGATCTTTACC
TCAAACCATACTTTTTAGAAGCCTACCGTCCAGTCCGTAAGGGTGACTTATTTTTAGTAC
GTGGTGGTATGAGAGCCGTAGAATTTAAAGTTGTCGAAACCGACCCAGGTGAATATTGTA
TCGTTGCACCAGAGACATTTATACATTGTGAAGGTGAGGCAGTCAAGAGAGAGGATGAAG
ACCGTCTCGATGAGGTTGGTTACGATGAXXXXXXXXXXCATGTGTTTTGTTCTTTGATGA
GTTGGATAGTANTGCACGTTNTANAGGTTCATCACAAGGTGATGCTGGTGGTGCTGGTGA
TAAAGTTATCAATCAAATTTTAACTGAAATGGATGGTATGAACGCCAAGAANAACGTTTT
CATCATTGGTGCTACCAATAGACCAGATATCATCGATCCAGCTATCCTCCGTCCAGGTCG
TTTAGATCAACTCATTTACATTCCATTACCAGATTTACCATCTCGTGTTGCCATTNTCAA
GGCTTGTNTCAATAAATCNCCAGTCGCCAAGGATGTAGATTTANAATTTTTGGGTCAAAA
NACTCAAGGTTTNTNTGGNGCAGATTTAACTGAAATTTGTCAACGTGCCTGTAAATTAGC
TATTCGTGAATCCATTGAAAAGGATATTGAATCCNCCAAAGCCCGTCAANAATCTGGTGA
NACCAANATGGAANATGACTCTGTCGATCCAGNACCAGAAATTACTCGTGATCNCTTCCA
ANAAGCCATGAGATCTGCTCGTCGTTCTGNATCCGATAATGATATTAGAAAATATGAAAG
CTTTGCTCAAACTTTAGNTCAATCAANAGGTCTTGGTAATAATTTCAAATTCCCAGATCA
AGAATCTTCAGGTCAATTCAATCAAGATCA
sequence update 2009. 4. 3
Translated Amino Acid sequence 
iyiflkngnn*RYXKDNNNPILERKKAPNRLFVEEAINDDNSVVTLNPETMDQLQFFRGD
TLLIKGKKRRDTVCIVLSDPTIDPSKIRMNKVVRNNLRVRLGDMISVHQCSDVKYGKRIH
VLPIDDTIEGLSGNLFDLYLKPYFLEAYRPVRKGDLFLVRGGMRAVEFKVVETDPGEYCI
VAPETFIHCEGEAVKREDEDRLDEVGYD---

---CVLFFDELDSXARXXGSSQGDAGGAGDKVINQILTEMDGMNAKXNVFIIGATNRPDI
IDPAILRPGRLDQLIYIPLPDLPSRVAIXKACXNKSPVAKDVDLXFLGQXTQGXXGADLT
EICQRACKLAIRESIEKDIESXKARQXSGXTXMEXDSVDPXPEITRDXFQXAMRSARRSX
SDNDIRKYESFAQTLXQSXGLGNNFKFPDQESSGQFNQD
Translated Amino Acid sequence (All Frames) 
Frame A:
iftyf*kmatiedtxkiitiqf*nvkklqidyl*kkqlmmiiq*lh*iqrqwinynslev
thf*lkvkreeipfvlycqiqpsihqrsv*ikl*eiifvld*vt*fqftnvqmlnmanvf
mcyqlmip*kvsvaisliftsnhtf*kptvqsvrvtyf*yvvv*ep*nlklskptqvniv
slhqrhlyivkvrqsrermktvsmrlvtm---

---hvfcslmswivxhvxxvhhkvmlvvlviklsikf*lkwmv*tprxtfsslvlpidqi
ssiqlssvqvv*insftfhyqiyhlvlpxsrlvsinxqsprm*ixnfwvkxlkvxxxqi*
lkfvnvpvn*lfvnplkrilnppkpvxnlvxpxwxmtlsiqxqkllvixsxkp*dllvvl
xpimilenmkallkl*xnqxvlviisnsqiknlqvnsiki

Frame B:
ylhifkkwqqlkilxr**qsnfrt*kssk*iicrrsn****fssyiksrdngsitil*r*
htfn*r*kekryrlycivrsnhrsikdpye*sckk*ssc*ir*hdfsspmfrc*iwqtys
cvtn**yhrrsqwqsl*slpqtilfrslpssp*g*lifstwwyesrri*scrnrpr*ily
rctrdiytl*r*gsqerg*rpsr*gwlr*---

---mcfvl**vg*xctxxrfitr*cwwcw**syqsnfn*ngwyerqexrfhhwcyq*try
hrssyppsrsfrsthlhsitrftiscchxqglxq*ixsrqgcrfxifgskxsrfxwxrfn
*nlstcl*isys*ih*kgy*ixqspsxiw*xqxgx*lcrsxtrnys*slpxsheicssfx
ir**y*ki*klcsnfxsixrsw**fqiprsrifrsiqsrs

Frame C:
iyiflkngnn*RYXKDNNNPILERKKAPNRLFVEEAINDDNSVVTLNPETMDQLQFFRGD
TLLIKGKKRRDTVCIVLSDPTIDPSKIRMNKVVRNNLRVRLGDMISVHQCSDVKYGKRIH
VLPIDDTIEGLSGNLFDLYLKPYFLEAYRPVRKGDLFLVRGGMRAVEFKVVETDPGEYCI
VAPETFIHCEGEAVKREDEDRLDEVGYD---

---CVLFFDELDSXARXXGSSQGDAGGAGDKVINQILTEMDGMNAKXNVFIIGATNRPDI
IDPAILRPGRLDQLIYIPLPDLPSRVAIXKACXNKSPVAKDVDLXFLGQXTQGXXGADLT
EICQRACKLAIRESIEKDIESXKARQXSGXTXMEXDSVDPXPEITRDXFQXAMRSARRSX
SDNDIRKYESFAQTLXQSXGLGNNFKFPDQESSGQFNQD
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFM237 (AFM237Q) /CSM/AF/AFM2-B/AFM237Q.Seq.d/                       2355   0.0
VHJ543 (VHJ543Q) /CSM/VH/VHJ5-B/VHJ543Q.Seq.d/                       1239   0.0
CHK459 (CHK459Q) /CSM/CH/CHK4-C/CHK459Q.Seq.d/                       1239   0.0
AHI616 (AHI616Q) /CSM/AH/AHI6-A/AHI616Q.Seq.d/                       1239   0.0
AHG221 (AHG221Q) /CSM/AH/AHG2-A/AHG221Q.Seq.d/                       1239   0.0
VHH667 (VHH667Q) /CSM/VH/VHH6-C/VHH667Q.Seq.d/                       1235   0.0
AHL436 (AHL436Q) /CSM/AH/AHL4-B/AHL436Q.Seq.d/                       1235   0.0
AHB361 (AHB361Q) /CSM/AH/AHB3-C/AHB361Q.Seq.d/                       1235   0.0
AHA159 (AHA159Q) /CSM/AH/AHA1-C/AHA159Q.Seq.d/                       1233   0.0
AHO409 (AHO409Q) /CSM/AH/AHO4-A/AHO409Q.Seq.d/                       1231   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ423755) Dictyostelium discoideum cDNA clone:ddv50e11, 5' ...  1239   0.0    1
(BJ367395) Dictyostelium discoideum cDNA clone:ddc42f16, 5' ...  1239   0.0    1
(BJ334897) Dictyostelium discoideum cDNA clone:dda48o04, 5' ...  1239   0.0    1
(BJ333539) Dictyostelium discoideum cDNA clone:dda43i06, 5' ...  1239   0.0    1
(BJ329535) Dictyostelium discoideum cDNA clone:dda25i10, 5' ...  1239   0.0    1
(BJ422627) Dictyostelium discoideum cDNA clone:ddv46e18, 5' ...  1235   0.0    1
(BJ336277) Dictyostelium discoideum cDNA clone:dda53h10, 5' ...  1235   0.0    1
(BJ331024) Dictyostelium discoideum cDNA clone:dda33j15, 5' ...  1235   0.0    1
(BJ330436) Dictyostelium discoideum cDNA clone:dda31e15, 5' ...  1233   0.0    1
(BJ337795) Dictyostelium discoideum cDNA clone:dda59b04, 5' ...  1231   0.0    1
dna update 2009. 4.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U83085_1(U83085|pid:none) Dictyostelium discoideum cell division...   384   e-105
DQ515925_1(DQ515925|pid:none) Nicotiana tabacum putative spindle...   323   8e-87
AL162751_7(AL162751|pid:none) Arabidopsis thaliana DNA chromosom...   322   1e-86
EU606206_1(EU606206|pid:none) Dimocarpus longan cell division cy...   322   2e-86
FB781796_1(FB781796|pid:none) Sequence 1069 from Patent WO200803...   320   5e-86
GM966461_1(GM966461|pid:none) Sequence 1793 from Patent WO200814...   319   1e-85
FB781494_1(FB781494|pid:none) Sequence 767 from Patent WO2008034...   319   1e-85
EU961444_1(EU961444|pid:none) Zea mays clone 235510 unknown mRNA.     318   2e-85
FB905989_1(FB905989|pid:none) Sequence 125262 from Patent WO2008...   318   2e-85
FB781564_1(FB781564|pid:none) Sequence 837 from Patent WO2008034...   318   2e-85
protein update 2009. 4. 5
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM237 is

5' end seq. ID AFM237F
5' end seq. 
>AFM237F.Seq
ATATTTACATATTTTTAAAAAATGGCAACAATTGAAGATACTTNAAAGATAATAACAATC
CAATTTTAGAACGTAAAAAAGCTCCAAATAGATTATTTGTAGAAGAAGCAATTAATGATG
ATAATTCAGTAGTTACATTAAATCCAGAGACAATGGATCAATTACAATTCTTTAGAGGTG
ACACACTTTTAATTAAAGGTAAAAAGAGAAGAGATACCGTTTGTATTGTATTGTCAGATC
CAACCATCGATCCATCAAAGATCCGTATGAATAAAGTTGTAAGAAATAATCTTCGTGTTA
GATTAGGTGACATGATTTCAGTTCACCAATGTTCAGATGTTAAATATGGCAAACGTATTC
ATGTGTTACCAATTGATGATACCATAGAAGGTCTCAGTGGCAATCTCTTTGATCTTTACC
TCAAACCATACTTTTTAGAAGCCTACCGTCCAGTCCGTAAGGGTGACTTATTTTTAGTAC
GTGGTGGTATGAGAGCCGTAGAATTTAAAGTTGTCGAAACCGACCCAGGTGAATATTGTA
TCGTTGCACCAGAGACATTTATACATTGTGAAGGTGAGGCAGTCAAGAGAGAGGATGAAG
ACCGTCTCGATGAGGTTGGTTACGATGAXXXXXXXXXX
Length of 5' end seq. 638
3' end seq. ID AFM237Z
3' end seq. 
>AFM237Z.Seq
XXXXXXXXXXCATGTGTTTTGTTCTTTGATGAGTTGGATAGTANTGCACGTTNTANAGGT
TCATCACAAGGTGATGCTGGTGGTGCTGGTGATAAAGTTATCAATCAAATTTTAACTGAA
ATGGATGGTATGAACGCCAAGAANAACGTTTTCATCATTGGTGCTACCAATAGACCAGAT
ATCATCGATCCAGCTATCCTCCGTCCAGGTCGTTTAGATCAACTCATTTACATTCCATTA
CCAGATTTACCATCTCGTGTTGCCATTNTCAAGGCTTGTNTCAATAAATCNCCAGTCGCC
AAGGATGTAGATTTANAATTTTTGGGTCAAAANACTCAAGGTTTNTNTGGNGCAGATTTA
ACTGAAATTTGTCAACGTGCCTGTAAATTAGCTATTCGTGAATCCATTGAAAAGGATATT
GAATCCNCCAAAGCCCGTCAANAATCTGGTGANACCAANATGGAANATGACTCTGTCGAT
CCAGNACCAGAAATTACTCGTGATCNCTTCCAANAAGCCATGAGATCTGCTCGTCGTTCT
GNATCCGATAATGATATTAGAAAATATGAAAGCTTTGCTCAAACTTTAGNTCAATCAANA
GGTCTTGGTAATAATTTCAAATTCCCAGATCAAGAATCTTCAGGTCAATTCAATCAAGAT
CA
Length of 3' end seq. 662
Connected seq. ID AFM237P
Connected seq. 
>AFM237P.Seq
ATATTTACATATTTTTAAAAAATGGCAACAATTGAAGATACTTNAAAGATAATAACAATC
CAATTTTAGAACGTAAAAAAGCTCCAAATAGATTATTTGTAGAAGAAGCAATTAATGATG
ATAATTCAGTAGTTACATTAAATCCAGAGACAATGGATCAATTACAATTCTTTAGAGGTG
ACACACTTTTAATTAAAGGTAAAAAGAGAAGAGATACCGTTTGTATTGTATTGTCAGATC
CAACCATCGATCCATCAAAGATCCGTATGAATAAAGTTGTAAGAAATAATCTTCGTGTTA
GATTAGGTGACATGATTTCAGTTCACCAATGTTCAGATGTTAAATATGGCAAACGTATTC
ATGTGTTACCAATTGATGATACCATAGAAGGTCTCAGTGGCAATCTCTTTGATCTTTACC
TCAAACCATACTTTTTAGAAGCCTACCGTCCAGTCCGTAAGGGTGACTTATTTTTAGTAC
GTGGTGGTATGAGAGCCGTAGAATTTAAAGTTGTCGAAACCGACCCAGGTGAATATTGTA
TCGTTGCACCAGAGACATTTATACATTGTGAAGGTGAGGCAGTCAAGAGAGAGGATGAAG
ACCGTCTCGATGAGGTTGGTTACGATGA----------CATGTGTTTTGTTCTTTGATGA
GTTGGATAGTANTGCACGTTNTANAGGTTCATCACAAGGTGATGCTGGTGGTGCTGGTGA
TAAAGTTATCAATCAAATTTTAACTGAAATGGATGGTATGAACGCCAAGAANAACGTTTT
CATCATTGGTGCTACCAATAGACCAGATATCATCGATCCAGCTATCCTCCGTCCAGGTCG
TTTAGATCAACTCATTTACATTCCATTACCAGATTTACCATCTCGTGTTGCCATTNTCAA
GGCTTGTNTCAATAAATCNCCAGTCGCCAAGGATGTAGATTTANAATTTTTGGGTCAAAA
NACTCAAGGTTTNTNTGGNGCAGATTTAACTGAAATTTGTCAACGTGCCTGTAAATTAGC
TATTCGTGAATCCATTGAAAAGGATATTGAATCCNCCAAAGCCCGTCAANAATCTGGTGA
NACCAANATGGAANATGACTCTGTCGATCCAGNACCAGAAATTACTCGTGATCNCTTCCA
ANAAGCCATGAGATCTGCTCGTCGTTCTGNATCCGATAATGATATTAGAAAATATGAAAG
CTTTGCTCAAACTTTAGNTCAATCAANAGGTCTTGGTAATAATTTCAAATTCCCAGATCA
AGAATCTTCAGGTCAATTCAATCAAGATCA
Length of connected seq. 1280
Full length Seq ID -
Full length Seq. -
Length of full length seq. -