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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM236
Library AF
(Link to library)
Clone ID AFM236
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFM236P
(Link to Original site)
Representative DNA sequence 
>AFM236 (AFM236Q) /CSM/AF/AFM2-B/AFM236Q.Seq.d/
AATNATTTTTTATATAAATTTTTATAAAAACGTTTTTTAATTTAATTGTTGCGTTTAAAC
AATGAGGTTAGGATCCATATCATCTCTATCTTGTGATCAACTGTGTAAATATTTACATTC
ATCACTTGGTGATGAATATTCAAACATCATTAATAGTTTTAAAATAAATCAAGTCACTGG
TGATGATTTTGTTTTATTTGAACAAAAAGATTATGAAACTTTATCAGTACCTTGGAAATT
TCAAAAAAAACTTAAAGAAATACAAGGTTCTGGTGTTGTAGATAATCCAGGCTCAACTCC
AAACCCAAGCCCAAACCCAAGTCCAAACCCAGTACCTGGCAATACTTCAAATGCACCAAC
ATCAACAGGTAGAGAATCACTTGAGACCCAAAGAGATATCATACAAATGAAAAGTAAAAT
TGATCTTCTCAGTAATTCATTGTTACAACTAGTTGAGCAAATGAAAGTTACCAAACCACC
TACAAATAACTTTTCAAATTTATCACCAGCAACACAAAATAAAATATTGAATCCATCACC
TCAATCAAAGAGAATCCCAATCATTGATCCAACATGTGTTGGTGCCAACTCAATTXXXXX
XXXXXAGCATTATACTTCCCAAAAAGTTTATGATTAAAACACCTCTTAGTGAACCTATAG
ATGGTACTATTGAATTGATGTATGGTGGTAGAAATATGTTTACTGGCAGTGTTACACAAG
GTGATGCTGATCTTCCTCTAAACCTCTTGGATGGTACATTTGAGGTTATCATTAAACCCA
ATAAGAGTAATTTATTACCTTTAAAGTTTAAAATGATTATACATGACTCTGTAAGAACCA
CTTCAAGCCATCAAAATGTCGGTAGACCTAAAAAGCCTAAAGAAATGGATTTCGTTTTAG
CTTGGGGGGAATCACCACTGGATTTGGATTCTCATATGTGGTGTATTCATCCTAATGGTT
CTATTAGTCATGTTTATTTCGGGGGTAGGAGTGTAGATAAAATGTCCTTGGAAGCTGATA
CTCAAAATGGTTTTGGTCCCGAAACCATAAGTATTATACGTTTAGATGGTTGTAAATATG
TTTATGCAGTTCATAATTTCTCAACTGAAGGAGAAATAGCTCAATCAGGTGCCAAGCTTA
CAATTGCCCATGAAACCTCAACATTATTTGAAAGATGTATCCCAAACACTCGACAAACTG
GTGCAAGATTTTGGGTAGTATGTACTATTGATGGAACATCGGAGATATTGACTTCAAAGA
TCATTTNAATTCCACAATTCACAAACAGATATTCCATTAAAATATAAATAAG
sequence update 2009. 4. 3
Translated Amino Acid sequence 
xifyinfyknvf*fnccv*TMRLGSISSLSCDQLCKYLHSSLGDEYSNIINSFKINQVTG
DDFVLFEQKDYETLSVPWKFQKKLKEIQGSGVVDNPGSTPNPSPNPSPNPVPGNTSNAPT
STGRESLETQRDIIQMKSKIDLLSNSLLQLVEQMKVTKPPTNNFSNLSPATQNKILNPSP
QSKRIPIIDPTCVGANSI---

---SIILPKKFMIKTPLSEPIDGTIELMYGGRNMFTGSVTQGDADLPLNLLDGTFEVIIK
PNKSNLLPLKFKMIIHDSVRTTSSHQNVGRPKKPKEMDFVLAWGESPLDLDSHMWCIHPN
GSISHVYFGGRSVDKMSLEADTQNGFGPETISIIRLDGCKYVYAVHNFSTEGEIAQSGAK
LTIAHETSTLFERCIPNTRQTGARFWVVCTIDGTSEILTSKIIXIPQFTNRYSIKI*i
Translated Amino Acid sequence (All Frames) 
Frame A:
nxflykfl*krfli*llrlnnevrihiisil*stv*iftfitw**ifkhh**f*nksshw
**fcfi*tkrl*nfistleiskkt*rntrfwccr*srlnskpkpkpkskpstwqyfkctn
inr*rit*dpkryhtnek*n*ssq*fivtts*anesyqttyk*lfkfitsntk*niesit
sikenpnh*snmcwcqln---

---SIILPKKFMIKTPLSEPIDGTIELMYGGRNMFTGSVTQGDADLPLNLLDGTFEVIIK
PNKSNLLPLKFKMIIHDSVRTTSSHQNVGRPKKPKEMDFVLAWGESPLDLDSHMWCIHPN
GSISHVYFGGRSVDKMSLEADTQNGFGPETISIIRLDGCKYVYAVHNFSTEGEIAQSGAK
LTIAHETSTLFERCIPNTRQTGARFWVVCTIDGTSEILTSKIIXIPQFTNRYSIKI*i

Frame B:
xifyinfyknvf*fnccv*TMRLGSISSLSCDQLCKYLHSSLGDEYSNIINSFKINQVTG
DDFVLFEQKDYETLSVPWKFQKKLKEIQGSGVVDNPGSTPNPSPNPSPNPVPGNTSNAPT
STGRESLETQRDIIQMKSKIDLLSNSLLQLVEQMKVTKPPTNNFSNLSPATQNKILNPSP
QSKRIPIIDPTCVGANSI---

---alyfpksl*lkhllvnl*mvlln*cmvveicllavlhkvmlifl*tswmvhlrlsln
pirviyyl*slk*lymtl*eplqaikmsvdlkslkkwisf*lggnhhwiwilicgvfilm
vllvmfisgvgv*ikcpwklilkmvlvpkp*vlyv*mvvnmfmqfiisqlkek*lnqvps
lqlpmkpqhylkdvsqtldklvqdfg*yvllmehrry*lqrsfxfhnsqtdiplkyk*

Frame C:
xffi*ifiktffnlivafkq*g*dpyhlylvincvniyihhlvmniqtslivlk*ikslv
milfylnkkimklyqylgnfkknlkkykvlvl*iiqaqlqtqaqtqvqtqylailqmhqh
qqvenhlrpkeisyk*kvklifsvihcyn*lsk*klpnhlqitfqiyhqqhkiky*ihhl
nqresqsliqhvlvptq---

---hytsqkvyd*nts**tyrwyy*idvww*kyvywqcytr*c*ssskplgwyi*gyh*t
q*e*fitfkv*ndyt*lcknhfkpskcr*t*ka*rngfrfslggittgfgfsyvvyss*w
fy*sclfrg*ecr*nvlgs*yskwfwsrnhkyytfrwl*iclcss*fln*rrnssircqa
yncp*nlnii*kmypkhstnwckilgsmyy*wnigdidfkdhxnstihkqifh*nink
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFM236 (AFM236Q) /CSM/AF/AFM2-B/AFM236Q.Seq.d/                       2399   0.0
CFH243 (CFH243Q) /CSM/CF/CFH2-B/CFH243Q.Seq.d/                       1382   0.0
AFM455 (AFM455Q) /CSM/AF/AFM4-C/AFM455Q.Seq.d/                       1382   0.0
AFH337 (AFH337Q) /CSM/AF/AFH3-B/AFH337Q.Seq.d/                       1382   0.0
AFE892 (AFE892Q) /CSM/AF/AFE8-D/AFE892Q.Seq.d/                       1380   0.0
AFE834 (AFE834Q) /CSM/AF/AFE8-B/AFE834Q.Seq.d/                       1376   0.0
SFF683 (SFF683Q) /CSM/SF/SFF6-D/SFF683Q.Seq.d/                       1368   0.0
SFE535 (SFE535Q) /CSM/SF/SFE5-B/SFE535Q.Seq.d/                       1368   0.0
AFG278 (AFG278Q) /CSM/AF/AFG2-D/AFG278Q.Seq.d/                       1368   0.0
AFE181 (AFE181Q) /CSM/AF/AFE1-D/AFE181Q.Seq.d/                       1368   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ346863) Dictyostelium discoideum cDNA clone:dda25g10, 3' ...  1396   0.0    1
(BJ339762) Dictyostelium discoideum cDNA clone:dda10d10, 3' ...  1376   0.0    1
(BJ398529) Dictyostelium discoideum cDNA clone:dds12e22, 3' ...  1259   0.0    3
(BJ397938) Dictyostelium discoideum cDNA clone:dds10e09, 3' ...  1259   0.0    3
(BJ373007) Dictyostelium discoideum cDNA clone:ddc15e12, 3' ...  1259   0.0    2
(BJ346961) Dictyostelium discoideum cDNA clone:dda25n14, 3' ...  1259   0.0    2
(BJ342912) Dictyostelium discoideum cDNA clone:dda15j09, 3' ...  1259   0.0    2
(BJ342415) Dictyostelium discoideum cDNA clone:dda13k20, 3' ...  1259   0.0    3
(BJ342157) Dictyostelium discoideum cDNA clone:dda9a21, 3' e...  1259   0.0    3
(BJ341924) Dictyostelium discoideum cDNA clone:dda8c23, 3' e...  1259   0.0    2
dna update 2009. 4.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000478_3794(CP000478|pid:none) Syntrophobacter fumaroxidans MP...    68   8e-10
CP000880_2513(CP000880|pid:none) Salmonella enterica subsp. ariz...    67   1e-09
CP000112_1873(CP000112|pid:none) Desulfovibrio desulfuricans G20...    65   5e-09
CU928162_679(CU928162|pid:none) Escherichia coli ED1a chromosome...    63   2e-08
AE014075_780(AE014075|pid:none) Escherichia coli CFT073, complet...    61   1e-07
CP000243_708(CP000243|pid:none) Escherichia coli UTI89, complete...    61   1e-07
CP000247_733(CP000247|pid:none) Escherichia coli 536, complete g...    59   3e-07
AE001437_1067(AE001437|pid:none) Clostridium acetobutylicum ATCC...    57   1e-06
FM954973_832(FM954973|pid:none) Vibrio splendidus LGP32 chromoso...    56   2e-06
AE001437_1068(AE001437|pid:none) Clostridium acetobutylicum ATCC...    55   5e-06
protein update 2009. 4. 5
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM236 is

5' end seq. ID AFM236F
5' end seq. 
>AFM236F.Seq
AATNATTTTTTATATAAATTTTTATAAAAACGTTTTTTAATTTAATTGTTGCGTTTAAAC
AATGAGGTTAGGATCCATATCATCTCTATCTTGTGATCAACTGTGTAAATATTTACATTC
ATCACTTGGTGATGAATATTCAAACATCATTAATAGTTTTAAAATAAATCAAGTCACTGG
TGATGATTTTGTTTTATTTGAACAAAAAGATTATGAAACTTTATCAGTACCTTGGAAATT
TCAAAAAAAACTTAAAGAAATACAAGGTTCTGGTGTTGTAGATAATCCAGGCTCAACTCC
AAACCCAAGCCCAAACCCAAGTCCAAACCCAGTACCTGGCAATACTTCAAATGCACCAAC
ATCAACAGGTAGAGAATCACTTGAGACCCAAAGAGATATCATACAAATGAAAAGTAAAAT
TGATCTTCTCAGTAATTCATTGTTACAACTAGTTGAGCAAATGAAAGTTACCAAACCACC
TACAAATAACTTTTCAAATTTATCACCAGCAACACAAAATAAAATATTGAATCCATCACC
TCAATCAAAGAGAATCCCAATCATTGATCCAACATGTGTTGGTGCCAACTCAATTXXXXX
XXXXX
Length of 5' end seq. 605
3' end seq. ID AFM236Z
3' end seq. 
>AFM236Z.Seq
XXXXXXXXXXAGCATTATACTTCCCAAAAAGTTTATGATTAAAACACCTCTTAGTGAACC
TATAGATGGTACTATTGAATTGATGTATGGTGGTAGAAATATGTTTACTGGCAGTGTTAC
ACAAGGTGATGCTGATCTTCCTCTAAACCTCTTGGATGGTACATTTGAGGTTATCATTAA
ACCCAATAAGAGTAATTTATTACCTTTAAAGTTTAAAATGATTATACATGACTCTGTAAG
AACCACTTCAAGCCATCAAAATGTCGGTAGACCTAAAAAGCCTAAAGAAATGGATTTCGT
TTTAGCTTGGGGGGAATCACCACTGGATTTGGATTCTCATATGTGGTGTATTCATCCTAA
TGGTTCTATTAGTCATGTTTATTTCGGGGGTAGGAGTGTAGATAAAATGTCCTTGGAAGC
TGATACTCAAAATGGTTTTGGTCCCGAAACCATAAGTATTATACGTTTAGATGGTTGTAA
ATATGTTTATGCAGTTCATAATTTCTCAACTGAAGGAGAAATAGCTCAATCAGGTGCCAA
GCTTACAATTGCCCATGAAACCTCAACATTATTTGAAAGATGTATCCCAAACACTCGACA
AACTGGTGCAAGATTTTGGGTAGTATGTACTATTGATGGAACATCGGAGATATTGACTTC
AAAGATCATTTNAATTCCACAATTCACAAACAGATATTCCATTAAAATATAAATAAG
Length of 3' end seq. 717
Connected seq. ID AFM236P
Connected seq. 
>AFM236P.Seq
AATNATTTTTTATATAAATTTTTATAAAAACGTTTTTTAATTTAATTGTTGCGTTTAAAC
AATGAGGTTAGGATCCATATCATCTCTATCTTGTGATCAACTGTGTAAATATTTACATTC
ATCACTTGGTGATGAATATTCAAACATCATTAATAGTTTTAAAATAAATCAAGTCACTGG
TGATGATTTTGTTTTATTTGAACAAAAAGATTATGAAACTTTATCAGTACCTTGGAAATT
TCAAAAAAAACTTAAAGAAATACAAGGTTCTGGTGTTGTAGATAATCCAGGCTCAACTCC
AAACCCAAGCCCAAACCCAAGTCCAAACCCAGTACCTGGCAATACTTCAAATGCACCAAC
ATCAACAGGTAGAGAATCACTTGAGACCCAAAGAGATATCATACAAATGAAAAGTAAAAT
TGATCTTCTCAGTAATTCATTGTTACAACTAGTTGAGCAAATGAAAGTTACCAAACCACC
TACAAATAACTTTTCAAATTTATCACCAGCAACACAAAATAAAATATTGAATCCATCACC
TCAATCAAAGAGAATCCCAATCATTGATCCAACATGTGTTGGTGCCAACTCAATT-----
-----AGCATTATACTTCCCAAAAAGTTTATGATTAAAACACCTCTTAGTGAACCTATAG
ATGGTACTATTGAATTGATGTATGGTGGTAGAAATATGTTTACTGGCAGTGTTACACAAG
GTGATGCTGATCTTCCTCTAAACCTCTTGGATGGTACATTTGAGGTTATCATTAAACCCA
ATAAGAGTAATTTATTACCTTTAAAGTTTAAAATGATTATACATGACTCTGTAAGAACCA
CTTCAAGCCATCAAAATGTCGGTAGACCTAAAAAGCCTAAAGAAATGGATTTCGTTTTAG
CTTGGGGGGAATCACCACTGGATTTGGATTCTCATATGTGGTGTATTCATCCTAATGGTT
CTATTAGTCATGTTTATTTCGGGGGTAGGAGTGTAGATAAAATGTCCTTGGAAGCTGATA
CTCAAAATGGTTTTGGTCCCGAAACCATAAGTATTATACGTTTAGATGGTTGTAAATATG
TTTATGCAGTTCATAATTTCTCAACTGAAGGAGAAATAGCTCAATCAGGTGCCAAGCTTA
CAATTGCCCATGAAACCTCAACATTATTTGAAAGATGTATCCCAAACACTCGACAAACTG
GTGCAAGATTTTGGGTAGTATGTACTATTGATGGAACATCGGAGATATTGACTTCAAAGA
TCATTTNAATTCCACAATTCACAAACAGATATTCCATTAAAATATAAATAAG
Length of connected seq. 1302
Full length Seq ID -
Full length Seq. -
Length of full length seq. -