>VFC407 (VFC407Q) /CSM/VF/VFC4-A/VFC407Q.Seq.d/
ACTGTTGGCCTACTGGNATATATTTTATTTGGGAAAAATAAATAAATAAATAAATAAATA
TGTCAGCTCCAGTTTTAACCACCAGTAGTGGTTCACCAATTGATAACAATTTAAACTCAA
TGACCGCAGGTGTTAATGGTCCAATTTTAATTCAAGATTTCACTTTAATTGATAAACTTG
CTCATTTCGATCGTGAACGTATCCCAGAACGTGTTGTACATGCTAAAGGTGCTGGTGCCC
ATGGTTATTTCGAAGTTACCTCAAGTGATGTACCAAAATGGTGTAAAGCTAAATTCTTAA
ATAAAGTTGGTAAGAGAACACCAATCTTCACCCGTTTCTCTACTGTTGGTGGTGAAAAAG
GTTCATCCGATTCTGAAAGAGATCCAAGAGGTTTCGCTGTCAAATTTTATXXXXXXXXXX

cwptgiyfiwek*ink*INMSAPVLTTSSGSPIDNNLNSMTAGVNGPILIQDFTLIDKLA
HFDRERIPERVVHAKGAGAHGYFEVTSSDVPKWCKAKFLNKVGKRTPIFTRFSTVGGEKG
SSDSERDPRGFAVKF---

Frame A:
tvgllxyilfgknk*ink*icqlqf*ppvvvhqliti*tq*pqvlmvqf*fkisl*linl
lisivnvsqnvlymlkvlvpmvisklpqvmyqngvklns*iklvrehqsspvslllvvkk
vhpilkeiqevslsnf---


Frame B:
llaywxifylgkink*inkyvsssfnhq*wftn**qfklndrrc*wsnfnsrfhfn**tc
sfrs*typrtcctc*rcwcpwlfrsylk*ctkmv*s*ilk*sw*entnlhpflycww*kr
firf*krskrfrcqil---


Frame C:
cwptgiyfiwek*ink*INMSAPVLTTSSGSPIDNNLNSMTAGVNGPILIQDFTLIDKLA
HFDRERIPERVVHAKGAGAHGYFEVTSSDVPKWCKAKFLNKVGKRTPIFTRFSTVGGEKG
SSDSERDPRGFAVKF---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSD165 (VSD165Q) /CSM/VS/VSD1-C/VSD165Q.Seq.d/                        694   0.0
VFN609 (VFN609Q) /CSM/VF/VFN6-A/VFN609Q.Seq.d/                        694   0.0
VFM644 (VFM644Q) /CSM/VF/VFM6-B/VFM644Q.Seq.d/                        694   0.0
VFF539 (VFF539Q) /CSM/VF/VFF5-B/VFF539Q.Seq.d/                        694   0.0
VFC407 (VFC407Q) /CSM/VF/VFC4-A/VFC407Q.Seq.d/                        694   0.0
VFA796 (VFA796Q) /CSM/VF/VFA7-D/VFA796Q.Seq.d/                        694   0.0
VFA635 (VFA635Q) /CSM/VF/VFA6-B/VFA635Q.Seq.d/                        694   0.0
VFA593 (VFA593Q) /CSM/VF/VFA5-D/VFA593Q.Seq.d/                        694   0.0
SFK359 (SFK359Q) /CSM/SF/SFK3-C/SFK359Q.Seq.d/                        694   0.0
SFJ685 (SFJ685Q) /CSM/SF/SFJ6-D/SFJ685Q.Seq.d/                        694   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF090443|AF090443.1 Dictyostelium discoideum catalase (cat) mRNA, complete cds.   694  0.0  1
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.   686  0.0  2
AB064338|AB064338.1 Candida boidinii CTA1 gene for peroxisomal catalase, complete cds.    94  1e-25  4
BH404083|BH404083.1 AG-ND-173L2.TR ND-TAM Anopheles gambiae genomic clone AG-ND-173L2, DNA sequence.    46  4e-11  3
BM400049|BM400049.1 5009-0-65-D09.t.1 Chilcoat/Turkewitz cDNA (large fraction) Tetrahymena thermophila cDNA, mRNA sequence.    62  8e-10  3
BM397717|BM397717.1 5009-0-36-A06.t.1 Chilcoat/Turkewitz cDNA (large fraction) Tetrahymena thermophila cDNA, mRNA sequence.    62  8e-10  3
AX536932|AX536932.1 Sequence 533 from Patent WO02064766.          72  6e-09  1
E65314|E65314.1 Novel catalase, gene of said catalase and composition containing  said  catalase, and process for preparing catalase using the genetic engineering  technology.    68  1e-08  2
BJ110289|BJ110289.1 Caenorhabditis elegans cDNA clone:yk1129b11 : 5' end, single read.    68  9e-08  1
AX338071|AX338071.1 Sequence 11 from Patent WO0193669.            68  9e-08  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF090443_1(AF090443|pid:none) Dictyostelium discoideum catalase ...   240   1e-62
AY378080_1(AY378080|pid:none) Tetrahymena thermophila putative c...   186   3e-46
CQ796333_1(CQ796333|pid:none) Sequence 109 from Patent WO2004027...   171   6e-42
AE017333_3935(AE017333|pid:none) Bacillus licheniformis DSM 13, ...   171   6e-42
(Q9XZD5) RecName: Full=Peroxisomal catalase;          EC=1.11.1....   171   9e-42
CP000560_826(CP000560|pid:none) Bacillus amyloliquefaciens FZB42...   170   2e-41
(P26901) RecName: Full=Vegetative catalase;          EC=1.11.1.6...   169   3e-41
AL009126_914(AL009126|pid:none) Bacillus subtilis subsp. subtili...   169   3e-41
(O93662) RecName: Full=Catalase;          EC=1.11.1.6;  &AJ00593...   167   8e-41
(P90682) RecName: Full=Catalase;          EC=1.11.1.6;  &Y10611_...   163   2e-39

 psg: 0.89  gvh: 0.57  alm: 0.44  top: 0.40  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: nuclear
	 20.0 %: extracellular, including cell wall
	 20.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: endoplasmic reticulum
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for VFC407 is nuc

>VFC407F.Seq
ACTGTTGGCCTACTGGNATATATTTTATTTGGGAAAAATAAATAAATAAATAAATAAATA
TGTCAGCTCCAGTTTTAACCACCAGTAGTGGTTCACCAATTGATAACAATTTAAACTCAA
TGACCGCAGGTGTTAATGGTCCAATTTTAATTCAAGATTTCACTTTAATTGATAAACTTG
CTCATTTCGATCGTGAACGTATCCCAGAACGTGTTGTACATGCTAAAGGTGCTGGTGCCC
ATGGTTATTTCGAAGTTACCTCAAGTGATGTACCAAAATGGTGTAAAGCTAAATTCTTAA
ATAAAGTTGGTAAGAGAACACCAATCTTCACCCGTTTCTCTACTGTTGGTGGTGAAAAAG
GTTCATCCGATTCTGAAAGAGATCCAAGAGGTTTCGCTGTCAAATTTTAT----------