>VFC405 (VFC405Q) /CSM/VF/VFC4-A/VFC405Q.Seq.d/
TTTAGTTAACTTTGTCCACACCAACTTAAACAAGNAATGCTCGTCAAGCTTATGGTGCTG
CTCCATACGCTGGTGAACAAACCTCTGCTGAATCATGGGGTACTGGTCGTGCTGTCGCTC
GTATTCCTCGTGTTCCAGGTTCAGGTACACACCGTTCAGGTCAAGGTGCCTTCGGTAACA
TGTGTAGAGGTGGTCGTATGTATGGTCCAAACXXXXXXXXXXCCGTTGACACCCCTCCAA
AAAACCAAAAGCTGCCGTTGAATTATTAAAGAAAATCAACGCCTACGCTGATGTCACCAA
AAGTCATCGACTCCAAACATATTCGTGCTGGTGCTGGTAAAGCAAGAAACAGACGTTACA
AAGTCCGTAAAGGTCCATTAGTCGTCGTCTCTGGTAAGACTACCGTCTCCCAAGCCTTAC
GTAACATCCCAGGTGTTGAAGTTGCCAACGTCTCAAGACTCAACTTATTAAAATTAGCAC
CAGGTGGTCACTTAGGTAGATTCATCATCTGGACTAAATCCGCTTTCGAACAATTAGACT
CAACCTTTGGTACCTTTGCCAAATCATCTGCTCAAAAGAAAGGTTACACTCTCCCACGTC
CAATGATTGCTAACGCTGATATTGTCAGACTCGTCAACTCTGATGAAATCCAAGCTGCCG
TTAGAGCCAGCAAAGTCGTCGTCAAACGTCCAACTGCCCCAGTTCGTCGTTCTAACCCAT
TAAAGAACTTACGTGCTATGATTAAATTAAACCCAGCCGCCGTCTCAACCCGTCGTACTC
AAGTTAAATCATTAAAATCAAAAGGTATCAAAGTTAGCAAAAAGAATCAATTAAGAGCTA
AATTAGTTGCTGCCACTTNCAACCAATAANTTTT

fs*LCPHQLKQXMLVKLMVLLHTLVNKPLLNHGVLVVLSLVFLVFQVQVHTVQVKVPSVT
CVEVVVCMVQ---

---VDTPPKNQKLPLNY*rkstptlmspkvidskhiragagkarnrrykvrkgplvvvsg
kttvsqalrnipgvevanvsrlnllklapgghlgrfiiwtksafeqldstfgtfakssaq
kkgytlprpmianadivrlvnsdeiqaavraskvvvkrptapvrrsnplknlramiklnp
aavstrrtqvkslkskgikvskknqlraklvaatxnq*x

Frame A:
fs*LCPHQLKQXMLVKLMVLLHTLVNKPLLNHGVLVVLSLVFLVFQVQVHTVQVKVPSVT
CVEVVVCMVQ---

---pltplqktkscr*iikenqrlr*chqksstpnifvlvlvkqetdvtksvkvh*sssl
vrlpspkpyvtsqvlklptsqdsty*n*hqvvt*vdsssglnplsnn*tqplvplpnhll
krkvtlshvq*lltlilsdsstlmksklplepaksssnvqlpqfvvlth*rtyvl*ln*t
qppsqpvvlklnh*nqkvsklakrin*eln*llplxtnxf

Frame B:
lvnfvhtnlnkxcssslwccsirw*tnlc*imgywsccrsysscsrfrytpfrsrclr*h
v*rwsyvwsk---

---r*hpskkpkaavellkkinayadvtkshrlqtyscwcw*skkqtlqsp*rsisrrlw
*dyrlpslt*hprc*scqrlktqlikistrwslr*ihhld*irfrtirlnlwylcqiics
kerlhsptsndc*r*ycqtrql**npscr*sqqsrrqtsncpsssf*pikeltcyd*ikp
srrlnpsyss*iikikryqs*qkesiks*iscchxqpixf

Frame C:
*ltlstpt*txnarqaygaapyageqtsaeswgtgravariprvpgsgthrsgqgafgnm
crggrmygpn---

---VDTPPKNQKLPLNY*rkstptlmspkvidskhiragagkarnrrykvrkgplvvvsg
kttvsqalrnipgvevanvsrlnllklapgghlgrfiiwtksafeqldstfgtfakssaq
kkgytlprpmianadivrlvnsdeiqaavraskvvvkrptapvrrsnplknlramiklnp
aavstrrtqvkslkskgikvskknqlraklvaatxnq*x

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFC405 (VFC405Q) /CSM/VF/VFC4-A/VFC405Q.Seq.d/                       1655   0.0
VFH591 (VFH591Q) /CSM/VF/VFH5-D/VFH591Q.Seq.d/                       1251   0.0
VFF496 (VFF496Q) /CSM/VF/VFF4-D/VFF496Q.Seq.d/                       1251   0.0
VFM326 (VFM326Q) /CSM/VF/VFM3-B/VFM326Q.Seq.d/                       1249   0.0
VFI733 (VFI733Q) /CSM/VF/VFI7-B/VFI733Q.Seq.d/                       1249   0.0
VFH759 (VFH759Q) /CSM/VF/VFH7-C/VFH759Q.Seq.d/                       1249   0.0
VFF133 (VFF133Q) /CSM/VF/VFF1-B/VFF133Q.Seq.d/                       1249   0.0
VFC625 (VFC625Q) /CSM/VF/VFC6-B/VFC625Q.Seq.d/                       1249   0.0
VFH741 (VFH741Q) /CSM/VF/VFH7-B/VFH741Q.Seq.d/                       1243   0.0
VFL609 (VFL609Q) /CSM/VF/VFL6-A/VFL609Q.Seq.d/                       1241   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115612|AC115612.2 Dictyostelium discoideum chromosome 2 map 6245135-6357017 strain AX4, complete sequence.  1112  0.0  5
Z35900|Z35900.1 S.cerevisiae chromosome II reading frame ORF YBR031w.    72  6e-24  3
Z74308|Z74308.1 S.cerevisiae chromosome IV reading frame ORF YDR012w.    72  2e-23  3
T38830|T38830.1 EST104394 S. cerevisiae strain X2180-1A Saccharomyces cerevisiae cDNA 3' end, mRNA sequence.    72  1e-22  2
AQ874342|AQ874342.1 V106H9 mTn-3xHA/lacZ Insertion Library, strain Y2278 Saccharomyces cerevisiae genomic 5', genomic survey sequence.    72  2e-22  2
AQ874948|AQ874948.1 V119B5 mTn-3xHA/lacZ Insertion Library, strain Y2278 Saccharomyces cerevisiae genomic 5', genomic survey sequence.    72  2e-22  2
AL424490|AL424490.1 T7 end of clone AZ0AA014F12 of library AZ0AA from strain CBS 712 of Kluyveromyces marxianus.    88  3e-22  2
J03195|J03195.1 Yeast (S.cerevisiae) ribosomal protein L2 (ScrpL2A) gene, complete cds.    72  8e-22  2
AL401457|AL401457.1 T3 end of clone AS0AA027H07 of library AS0AA from strain CLIB 533 of Saccharomyces bayanus.    78  1e-21  2
X76078|X76078.1 S.cerevisiae (alphaS288C) GAL1, FUR4 and CAL1 genes.    72  2e-21  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC148756_18(AC148756|pid:none) Medicago truncatula clone mth2-22...   241   2e-62
AU066549_1(AU066549|pid:none) Chlamydomonas sp. HS-5 mRNA for 60...   238   1e-61
EF676106_1(EF676106|pid:none) Picea sitchensis clone WS02710_D09...   236   1e-60
AY961533_1(AY961533|pid:none) Lysiphlebus testaceipes ribosomal ...   235   2e-60
AC123596_24(AC123596|pid:none) Medicago truncatula clone mth1-17...   233   5e-60
CP001333_223(CP001333|pid:none) Micromonas sp. RCC299 chromosome...   233   5e-60
EF147296_1(EF147296|pid:none) Populus trichocarpa clone WS0122_F...   233   5e-60
AY769271_1(AY769271|pid:none) Bombyx mori ribosomal protein L4 (...   231   3e-59
(Q9SF40) RecName: Full=60S ribosomal protein L4-1;          Shor...   231   3e-59
AM048989_1(AM048989|pid:none) Eucinetus sp. APV-2005 mRNA for ri...   229   7e-59

 psg: 0.78  gvh: 0.77  alm: 0.22  top: 0.43  tms: 0.07  mit: 0.32  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.33  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: endoplasmic reticulum
	 20.0 %: nuclear
	 20.0 %: cytoplasmic
	 12.0 %: mitochondrial
	 12.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for VFC405 is end

>VFC405F.Seq
TTTAGTTAACTTTGTCCACACCAACTTAAACAAGNAATGCTCGTCAAGCTTATGGTGCTG
CTCCATACGCTGGTGAACAAACCTCTGCTGAATCATGGGGTACTGGTCGTGCTGTCGCTC
GTATTCCTCGTGTTCCAGGTTCAGGTACACACCGTTCAGGTCAAGGTGCCTTCGGTAACA
TGTGTAGAGGTGGTCGTATGTATGGTCCAAAC----------

>VFC405Z.Seq
----------CCGTTGACACCCCTCCAAAAAACCAAAAGCTGCCGTTGAATTATTAAAGA
AAATCAACGCCTACGCTGATGTCACCAAAAGTCATCGACTCCAAACATATTCGTGCTGGT
GCTGGTAAAGCAAGAAACAGACGTTACAAAGTCCGTAAAGGTCCATTAGTCGTCGTCTCT
GGTAAGACTACCGTCTCCCAAGCCTTACGTAACATCCCAGGTGTTGAAGTTGCCAACGTC
TCAAGACTCAACTTATTAAAATTAGCACCAGGTGGTCACTTAGGTAGATTCATCATCTGG
ACTAAATCCGCTTTCGAACAATTAGACTCAACCTTTGGTACCTTTGCCAAATCATCTGCT
CAAAAGAAAGGTTACACTCTCCCACGTCCAATGATTGCTAACGCTGATATTGTCAGACTC
GTCAACTCTGATGAAATCCAAGCTGCCGTTAGAGCCAGCAAAGTCGTCGTCAAACGTCCA
ACTGCCCCAGTTCGTCGTTCTAACCCATTAAAGAACTTACGTGCTATGATTAAATTAAAC
CCAGCCGCCGTCTCAACCCGTCGTACTCAAGTTAAATCATTAAAATCAAAAGGTATCAAA
GTTAGCAAAAAGAATCAATTAAGAGCTAAATTAGTTGCTGCCACTTNCAACCAATAANTT
TT

>VFC405P.Seq
TTTAGTTAACTTTGTCCACACCAACTTAAACAAGNAATGCTCGTCAAGCTTATGGTGCTG
CTCCATACGCTGGTGAACAAACCTCTGCTGAATCATGGGGTACTGGTCGTGCTGTCGCTC
GTATTCCTCGTGTTCCAGGTTCAGGTACACACCGTTCAGGTCAAGGTGCCTTCGGTAACA
TGTGTAGAGGTGGTCGTATGTATGGTCCAAAC----------CCGTTGACACCCCTCCAA
AAAACCAAAAGCTGCCGTTGAATTATTAAAGAAAATCAACGCCTACGCTGATGTCACCAA
AAGTCATCGACTCCAAACATATTCGTGCTGGTGCTGGTAAAGCAAGAAACAGACGTTACA
AAGTCCGTAAAGGTCCATTAGTCGTCGTCTCTGGTAAGACTACCGTCTCCCAAGCCTTAC
GTAACATCCCAGGTGTTGAAGTTGCCAACGTCTCAAGACTCAACTTATTAAAATTAGCAC
CAGGTGGTCACTTAGGTAGATTCATCATCTGGACTAAATCCGCTTTCGAACAATTAGACT
CAACCTTTGGTACCTTTGCCAAATCATCTGCTCAAAAGAAAGGTTACACTCTCCCACGTC
CAATGATTGCTAACGCTGATATTGTCAGACTCGTCAACTCTGATGAAATCCAAGCTGCCG
TTAGAGCCAGCAAAGTCGTCGTCAAACGTCCAACTGCCCCAGTTCGTCGTTCTAACCCAT
TAAAGAACTTACGTGCTATGATTAAATTAAACCCAGCCGCCGTCTCAACCCGTCGTACTC
AAGTTAAATCATTAAAATCAAAAGGTATCAAAGTTAGCAAAAAGAATCAATTAAGAGCTA
AATTAGTTGCTGCCACTTNCAACCAATAANTTTT