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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFC358
Library VF
(Link to library)
Clone ID VFC358
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U09935-1
Original site URL
Representative seq. ID VFC358P
(Link to Original site)
Representative DNA sequence 
>VFC358 (VFC358Q) /CSM/VF/VFC3-C/VFC358Q.Seq.d/
ACTGTTGGCCTACTGGNATTATTTGTATTATCTGTGTGTTTATTATTAAAAGTCAATCAA
TCACATAGAATAATATATAAAACTATGGAAGATATGCAAGTTGAAAAGAATACAGAAGGA
TCATCATCATCATCATCAAATAATAATAATAATAATTCAATTTCAAATGAATTCGATTTA
GAAACTTATATCAATAATTATTCAGGATTTACAAAGATTCATAGATTAATTTTCATTGCT
GATAATTGTAAACAATTAGAAGTTGAAGCATATAATATGGCATTGAAAGAAGTGCAAAAA
ACACCAAATCTTGAACTCTACAATACAATCATCAATAAATCACACGGTATTCTCGAACTT
GACCCCAGTATACATTGAAAATTTAAGTAAAAAGAATTCCTTACAATTAGATAAATTXXX
XXXXXXXTGATCCAATGTTTAAAAACTATTTAGAATTAGTACCAGAACTTAGGGAATTAA
TTAACGATTTCTATAATACCAAGTATGGTTCATGTTTAAAGTATCTCGATAAAATGAAGC
CAATTTTATTATTGGATATTCATCTCTATAAACATGTGGAGATTTTATATCAAAGAATTA
GAAGCAAAGCATTGGTTCAATACTTTTCACCATACCAATCGGTCGATATGAATATTATGG
CCAGTGCTTTCAATACCACTGTCACTCTTTTGGAAAAGGAGATCAGTAAACTCATTATGG
AAAATGAGATCCAAGCTCGTATCGATTCTCATAATAAACGTCTATACGCTAGAAAAGCCG
ATCAAAGAACAACCACCTTTGAAAAAACCGTTCAAGTTGGTTCCGATTTCCAAAACTCTT
CAAATTCTCTCCTCTTACGTTTAGAGATGTTAAATAATAATATCTCAACCGTTTCAAATC
GTAAAGATAATGAAAGAGGTAATTGGGAAAATCCACATCATCATCACCAAATGCAACATC
AAAT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
llaywxylyylcvyy*ksinhie*yiklwkicklkriqkdhhhhhqiiiiiiqfqmnsi*
klisiiiqdlqrfid*fslliivnn*klkhiiwh*KKCKKHQILNSTIQSSINHTVFSNL
TPVYIENLSKKNSLQLDK---

---DPMFKNYLELVPELRELINDFYNTKYGSCLKYLDKMKPILLLDIHLYKHVEILYQRI
RSKALVQYFSPYQSVDMNIMASAFNTTVTLLEKEISKLIMENEIQARIDSHNKRLYARKA
DQRTTTFEKTVQVGSDFQNSSNSLLLRLEMLNNNISTVSNRKDNERGNWENPHHHHQMQH
Q
Translated Amino Acid sequence (All Frames) 
Frame A:
tvgllxlfvlsvclllkvnqshriiyktmedmqvekntegssssssnnnnnnsisnefdl
etyinnysgftkihrlifiadnckqleveaynmalkevqktpnlelyntiinkshgilel
dpsih*kfk*kefltir*i---

---*snv*klfristrt*gin*rfl*yqvwfmfkvsr*neanfiigyssl*tcgdfiskn
*kqsigsilftipigryeyygqcfqyhchsfgkgdq*thygk*dpssyrfs**tsir*ks
rsknnhl*knrsswfrfpklfkfspltfrdvk**ylnrfks*r**kr*lgkstssspnat
sn

Frame B:
llaywxylyylcvyy*ksinhie*yiklwkicklkriqkdhhhhhqiiiiiiqfqmnsi*
klisiiiqdlqrfid*fslliivnn*klkhiiwh*KKCKKHQILNSTIQSSINHTVFSNL
TPVYIENLSKKNSLQLDK---

---DPMFKNYLELVPELRELINDFYNTKYGSCLKYLDKMKPILLLDIHLYKHVEILYQRI
RSKALVQYFSPYQSVDMNIMASAFNTTVTLLEKEISKLIMENEIQARIDSHNKRLYARKA
DQRTTTFEKTVQVGSDFQNSSNSLLLRLEMLNNNISTVSNRKDNERGNWENPHHHHQMQH
Q

Frame C:
cwptgiiciicvfiiksqsit*nni*nygryas*keyrriiiiiik*****fnfk*irfr
nlyq*lfriykds*infhc**l*tirs*si*ygiersakntks*tlqynhq*itrysrt*
pqytlki*vkripyn*in---

---iqclkti*n*yqnlgn*ltisiipsmvhv*sisik*sqfyywifisinmwrfyikel
eakhwfntfhhtnrsi*ilwpvlsiplslfwkrrsvnslwkmrsklvsiliinvytlekp
ikeqpplkkpfklvpisktlqilssyv*rc*iiisqpfqivkimkevigkihiiitkcni
k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFC358 (VFC358Q) /CSM/VF/VFC3-C/VFC358Q.Seq.d/                       1542   0.0
VSF853 (VSF853Q) /CSM/VS/VSF8-C/VSF853Q.Seq.d/                       1065   0.0
AFN309 (AFN309Q) /CSM/AF/AFN3-A/AFN309Q.Seq.d/                       1065   0.0
AFG409 (AFG409Q) /CSM/AF/AFG4-A/AFG409Q.Seq.d/                       1065   0.0
AFJ190 (AFJ190Q) /CSM/AF/AFJ1-D/AFJ190Q.Seq.d/                       1059   0.0
AFO845 (AFO845Q) /CSM/AF/AFO8-B/AFO845Q.Seq.d/                       1049   0.0
AFD533 (AFD533Q) /CSM/AF/AFD5-B/AFD533Q.Seq.d/                       1049   0.0
VFL450 (VFL450Q) /CSM/VF/VFL4-C/VFL450Q.Seq.d/                       1047   0.0
AFJ388 (AFJ388Q) /CSM/AF/AFJ3-D/AFJ388Q.Seq.d/                       1033   0.0
AFH239 (AFH239Q) /CSM/AF/AFH2-B/AFH239Q.Seq.d/                       1001   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BI488306|BI488306.1 gc77f04.y1 Moss EST library PPN Physcomitrella patens cDNA clone PEP_SOURCE_ID:PPN241207 5' similar to SW:FUS6_ARATH P45432 FUSCA PROTEIN FUS6. ;, mRNA sequence.    46  0.015  2
BC027339|BC027339.1 Mus musculus, Similar to KIAA0336 gene product, clone MGC:28300 IMAGE:4012617, mRNA, complete cds.    38  0.024  3
CD804045|CD804045.1 UI-M-GV0-chw-j-04-0-UI.r1 NIH_BMAP_GV0 Mus musculus cDNA clone IMAGE:30542715 5', mRNA sequence.    38  0.055  2
CB235720|CB235720.1 AGENCOURT_11474035 NIH_MGC_166 Mus musculus cDNA clone IMAGE:30252398 5', mRNA sequence.    38  0.085  2
AB093232|AB093232.1 Mus musculus mRNA for mKIAA0336 protein.      38  0.14  3
AC108605|AC108605.4 Rattus norvegicus clone CH230-267P22, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    52  0.18  4
AC132078|AC132078.2 Canis familiaris clone RP81-406J22, WORKING DRAFT SEQUENCE, 9 ordered pieces.    38  0.66  5
AC100148|AC100148.1 Mus musculus clone RP23-43E17, LOW-PASS SEQUENCE SAMPLING.    46  0.81  1
BF331503|BF331503.1 QV3-BT0537-210100-064-d02 BT0537 Homo sapiens cDNA, mRNA sequence.    46  0.81  1
AC142448|AC142448.1 Mus musculus chromosome UNK clone RP24-540M5, WORKING DRAFT SEQUENCE, 10 unordered pieces.    46  0.81  1
dna update 2003. 9.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54QX3) RecName: Full=COP9 signalosome complex subunit 1;      ...   361   2e-98
FB781974_1(FB781974|pid:none) Sequence 1247 from Patent WO200803...   190   7e-47
AF106844_1(AF106844|pid:none) Oryza sativa rCOP11 protein (rCOP1...   189   1e-46
EU964381_1(EU964381|pid:none) Zea mays clone 278453 COP9 signalo...   189   2e-46
BT052344_1(BT052344|pid:none) Medicago truncatula clone MTYFD_FE...   182   1e-44
AM461944_1(AM461944|pid:none) Vitis vinifera contig VV78X085418....   182   2e-44
AL137898_4(AL137898|pid:none) Arabidopsis thaliana DNA chromosom...   181   3e-44
AK117532_1(AK117532|pid:none) Arabidopsis thaliana At3g61140 mRN...   181   3e-44
BX897685_6(BX897685|pid:none) Zebrafish DNA sequence from clone ...   178   3e-43
BC080478_1(BC080478|pid:none) Xenopus tropicalis MGC89799 protei...   176   1e-42
protein update 2009. 6.17
PSORT 

 psg: 0.84  gvh: 0.31  alm: 0.44  top: 0.13  tms: 0.00  mit: 0.40  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for VFC358 is cyt
5' end seq. ID VFC358F
5' end seq. 
>VFC358F.Seq
ACTGTTGGCCTACTGGNATTATTTGTATTATCTGTGTGTTTATTATTAAAAGTCAATCAA
TCACATAGAATAATATATAAAACTATGGAAGATATGCAAGTTGAAAAGAATACAGAAGGA
TCATCATCATCATCATCAAATAATAATAATAATAATTCAATTTCAAATGAATTCGATTTA
GAAACTTATATCAATAATTATTCAGGATTTACAAAGATTCATAGATTAATTTTCATTGCT
GATAATTGTAAACAATTAGAAGTTGAAGCATATAATATGGCATTGAAAGAAGTGCAAAAA
ACACCAAATCTTGAACTCTACAATACAATCATCAATAAATCACACGGTATTCTCGAACTT
GACCCCAGTATACATTGAAAATTTAAGTAAAAAGAATTCCTTACAATTAGATAAATT---
-------
Length of 5' end seq. 417
3' end seq. ID VFC358Z
3' end seq. 
>VFC358Z.Seq
----------TGATCCAATGTTTAAAAACTATTTAGAATTAGTACCAGAACTTAGGGAAT
TAATTAACGATTTCTATAATACCAAGTATGGTTCATGTTTAAAGTATCTCGATAAAATGA
AGCCAATTTTATTATTGGATATTCATCTCTATAAACATGTGGAGATTTTATATCAAAGAA
TTAGAAGCAAAGCATTGGTTCAATACTTTTCACCATACCAATCGGTCGATATGAATATTA
TGGCCAGTGCTTTCAATACCACTGTCACTCTTTTGGAAAAGGAGATCAGTAAACTCATTA
TGGAAAATGAGATCCAAGCTCGTATCGATTCTCATAATAAACGTCTATACGCTAGAAAAG
CCGATCAAAGAACAACCACCTTTGAAAAAACCGTTCAAGTTGGTTCCGATTTCCAAAACT
CTTCAAATTCTCTCCTCTTACGTTTAGAGATGTTAAATAATAATATCTCAACCGTTTCAA
ATCGTAAAGATAATGAAAGAGGTAATTGGGAAAATCCACATCATCATCACCAAATGCAAC
ATCAAAT
Length of 3' end seq. 537
Connected seq. ID VFC358P
Connected seq. 
>VFC358P.Seq
ACTGTTGGCCTACTGGNATTATTTGTATTATCTGTGTGTTTATTATTAAAAGTCAATCAA
TCACATAGAATAATATATAAAACTATGGAAGATATGCAAGTTGAAAAGAATACAGAAGGA
TCATCATCATCATCATCAAATAATAATAATAATAATTCAATTTCAAATGAATTCGATTTA
GAAACTTATATCAATAATTATTCAGGATTTACAAAGATTCATAGATTAATTTTCATTGCT
GATAATTGTAAACAATTAGAAGTTGAAGCATATAATATGGCATTGAAAGAAGTGCAAAAA
ACACCAAATCTTGAACTCTACAATACAATCATCAATAAATCACACGGTATTCTCGAACTT
GACCCCAGTATACATTGAAAATTTAAGTAAAAAGAATTCCTTACAATTAGATAAATT---
-------TGATCCAATGTTTAAAAACTATTTAGAATTAGTACCAGAACTTAGGGAATTAA
TTAACGATTTCTATAATACCAAGTATGGTTCATGTTTAAAGTATCTCGATAAAATGAAGC
CAATTTTATTATTGGATATTCATCTCTATAAACATGTGGAGATTTTATATCAAAGAATTA
GAAGCAAAGCATTGGTTCAATACTTTTCACCATACCAATCGGTCGATATGAATATTATGG
CCAGTGCTTTCAATACCACTGTCACTCTTTTGGAAAAGGAGATCAGTAAACTCATTATGG
AAAATGAGATCCAAGCTCGTATCGATTCTCATAATAAACGTCTATACGCTAGAAAAGCCG
ATCAAAGAACAACCACCTTTGAAAAAACCGTTCAAGTTGGTTCCGATTTCCAAAACTCTT
CAAATTCTCTCCTCTTACGTTTAGAGATGTTAAATAATAATATCTCAACCGTTTCAAATC
GTAAAGATAATGAAAGAGGTAATTGGGAAAATCCACATCATCATCACCAAATGCAACATC
AAAT
Length of connected seq. 954
Full length Seq ID -
Full length Seq. -
Length of full length seq. -