VFC328
Library VF
(Link to library)
Clone ID VFC328
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16602-1
Original site URL
Representative seq. ID VFC328F
(Link to Original site)
Representative DNA sequence
>VFC328 (VFC328Q) /CSM/VF/VFC3-B/VFC328Q.Seq.d/
ACTGTTGGCCTACTGGNATTACAAGCATTGAAAAAAAGAACAAATCAATTTTATTATTAG
TTTTAGTAATTGTATCAATTATTGGTTCAATTGACTCAAAGAAAGTATTCAATGTTCGTA
CTGATTTAAAAAATCAATTAAAATTTAGACATTTTGATGATAGTTTAGATTATGATGCAA
TCAATTATCAATGGTTCACTCAAAGTGTTGATCATTTTAATCCAGCAAACCCAACAACTT
TCCAACAAAGATATTTAATTAATGACCAATATTGGGATGGTACAGGTCCAGTTTTTATCA
TGATTAATGGTGAAGGTCCAATGGATATTAATACTGTAACCCAACTTCAATTTGTTGTTT
GGGCTAAACAAGTTAGTGCACTTGTTGTTTCTCTTGAACATCGNTATTATGGTGCTAGTT
TTGTAACTGAAGACCTTTCACTTGAAAATTTACAATGGTTAAATTCAGCACAAGCXXXXX
XXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence
CWPTGITSIEKKNKSILLLVLVIVSIIGSIDSKKVFNVRTDLKNQLKFRHFDDSLDYDAI
NYQWFTQSVDHFNPANPTTFQQRYLINDQYWDGTGPVFIMINGEGPMDINTVTQLQFVVW
AKQVSALVVSLEHRYYGASFVTEDLSLENLQWLNSAQ---


Translated Amino Acid sequence (All Frames)
Frame A:
tvgllxlqalkkrtnqfyy*f**lyqllvqltqrkysmfvli*kin*nldilmiv*immq
siingslkvliiliqqtqqlsnkdi*lmtnigmvqvqfls*lmvkvqwilil*pnfnllf
glnklvhllfllniximvlvl*lktfhlkiyng*iqhk---


Frame B:
llaywxykh*kkeqinfiisfsncinywfn*lkesiqcsy*fkksiki*tf***frl*cn
qlsmvhskc*sf*sskpnnfptkifn**pilgwyrssfyhd*w*rsngy*ycnptsiccl
g*ts*ctccfs*tsxlwc*fcn*rpft*kftmvkfst---


Frame C:
CWPTGITSIEKKNKSILLLVLVIVSIIGSIDSKKVFNVRTDLKNQLKFRHFDDSLDYDAI
NYQWFTQSVDHFNPANPTTFQQRYLINDQYWDGTGPVFIMINGEGPMDINTVTQLQFVVW
AKQVSALVVSLEHRYYGASFVTEDLSLENLQWLNSAQ---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFC328 (VFC328Q) /CSM/VF/VFC3-B/VFC328Q.Seq.d/ 888 0.0
VSJ823 (VSJ823Q) /CSM/VS/VSJ8-A/VSJ823Q.Seq.d/ 862 0.0
VSH135 (VSH135Q) /CSM/VS/VSH1-B/VSH135Q.Seq.d/ 862 0.0
VSD155 (VSD155Q) /CSM/VS/VSD1-C/VSD155Q.Seq.d/ 862 0.0
VFO865 (VFO865Q) /CSM/VF/VFO8-C/VFO865Q.Seq.d/ 862 0.0
VFO856 (VFO856Q) /CSM/VF/VFO8-C/VFO856Q.Seq.d/ 862 0.0
VFO841 (VFO841Q) /CSM/VF/VFO8-B/VFO841Q.Seq.d/ 862 0.0
VFO761 (VFO761Q) /CSM/VF/VFO7-C/VFO761Q.Seq.d/ 862 0.0
VFO739 (VFO739Q) /CSM/VF/VFO7-B/VFO739Q.Seq.d/ 862 0.0
VFO690 (VFO690Q) /CSM/VF/VFO6-D/VFO690Q.Seq.d/ 862 0.0

own update 2001.11.27
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC084578|AC084578.1 Caenorhabditis briggsae cosmid G39O07, complete sequence. 40 0.14 2
AK127029|AK127029.1 Homo sapiens cDNA FLJ45085 fis, clone BRAWH3028754. 36 0.30 3
BX248114|BX248114.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-209I22. 36 0.32 5
AW705505|AW705505.1 sk49h12.y1 Gm-c1019 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1019-5952 5', mRNA sequence. 46 0.40 1
AI900122|AI900122.1 sc01b07.y1 Gm-c1012 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1012-878 5', mRNA sequence. 46 0.40 1
CA799428|CA799428.1 sat33f03.y1 Gm-c1056 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1056-3318 5', mRNA sequence. 46 0.40 1
AI441512|AI441512.1 sa87c11.y1 Gm-c1004 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1004-6285 5', mRNA sequence. 46 0.40 1
AW705268|AW705268.1 sk59a02.y1 Gm-c1019 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1019-6819 5', mRNA sequence. 46 0.40 1
BM520804|BM520804.1 sal30g03.y1 Gm-c1059 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1059-3773 5', mRNA sequence. 46 0.40 1
BI317694|BI317694.1 saf19h09.y1 Gm-c1076 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1076-1506 5', mRNA sequence. 46 0.40 1
dna update 2003. 9.12
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

BC161646_1(BC161646|pid:none) Xenopus tropicalis hypothetical pr... 94 2e-18
BT080886_1(BT080886|pid:none) Caligus clemensi clone ccle-evs-50... 91 2e-17
AE014296_1236(AE014296|pid:none) Drosophila melanogaster chromos... 88 1e-16
BC133755_1(BC133755|pid:none) Xenopus laevis hypothetical LOC495... 87 2e-16
BC108759_1(BC108759|pid:none) Xenopus laevis hypothetical protei... 87 2e-16
S44851(S44851)K12H4.7 protein - Caenorhabditis elegans 85 8e-16
L14331_6(L14331|pid:none) Caenorhabditis elegans cosmid K12H4, c... 85 8e-16
(P34528) RecName: Full=Putative serine protease K12H4.7; ... 85 8e-16
BT030459_1(BT030459|pid:none) Arabidopsis thaliana At4g36190 mRN... 81 1e-14
FB848280_1(FB848280|pid:none) Sequence 67553 from Patent WO20080... 81 1e-14
protein update 2009. 6.17
PSORT

psg: 0.65 gvh: 0.72 alm: 0.20 top: 0.47 tms: 0.07 mit: 0.19 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: endoplasmic reticulum
20.0 %: nuclear
20.0 %: cytoplasmic
12.0 %: mitochondrial
8.0 %: Golgi
4.0 %: vacuolar
4.0 %: plasma membrane
4.0 %: vesicles of secretory system
4.0 %: peroxisomal

>> prediction for VFC328 is end

5' end seq. ID VFC328F
5' end seq.
>VFC328F.Seq
ACTGTTGGCCTACTGGNATTACAAGCATTGAAAAAAAGAACAAATCAATTTTATTATTAG
TTTTAGTAATTGTATCAATTATTGGTTCAATTGACTCAAAGAAAGTATTCAATGTTCGTA
CTGATTTAAAAAATCAATTAAAATTTAGACATTTTGATGATAGTTTAGATTATGATGCAA
TCAATTATCAATGGTTCACTCAAAGTGTTGATCATTTTAATCCAGCAAACCCAACAACTT
TCCAACAAAGATATTTAATTAATGACCAATATTGGGATGGTACAGGTCCAGTTTTTATCA
TGATTAATGGTGAAGGTCCAATGGATATTAATACTGTAACCCAACTTCAATTTGTTGTTT
GGGCTAAACAAGTTAGTGCACTTGTTGTTTCTCTTGAACATCGNTATTATGGTGCTAGTT
TTGTAACTGAAGACCTTTCACTTGAAAATTTACAATGGTTAAATTCAGCACAAGC-----
-----
Length of 5' end seq. 475
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -