NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFC303
Library VF
(Link to library)
Clone ID VFC303
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15516-1
Original site URL
Representative seq. ID VFC303P
(Link to Original site)
Representative DNA sequence 
>VFC303 (VFC303Q) /CSM/VF/VFC3-A/VFC303Q.Seq.d/
GTTGGCCTACTGGNAAAAAAAACGATAACTAACATATAAATAAAGGTAGCATTAAATTAG
GCTATAACTGGATTATATATTTATAAAATGTTAGTATTATTTGAAACATCAGCAGGTTTT
GCCTTATTCAAGGTTTTGGATGAAGGTAAAATGAAATCAAAACCAGTTGACATCAATAAC
TTTTTCGAAACCCCAGAAAAAGCTTCCTCATTTGTTTCATTAAAGAAATTTTATAAATTT
GATGGTACATTAGATGCATTAGAAGCACAAACTGCAATTGCAGAATGTAAAGTTCCAGAA
TCATTATCAAACTTTTTAAAAAAGAATGTTGTTAGTGAGAAATTAAATGAACAATTAATT
GTTAGTGATAGTAAATTTGGTAATGCAATCAAGGACGCATTAAATATCAAAGTTTTATGT
GATGATACTACTCAAGAGTTGATTAGAGGTATTCGTTTACAATTGAAATCATTGGTCAAT
GCAAATGAACAAGATTTGAATGCCATGTCAATTGGTTTATCACATTCATACAGTAGATAT
AAATTAAAGTTCTCACCAGATAAGGTCGATACAATGATCGTTCAXXXXXXXXXXTGGTTC
ATTGATGAATTTAGCCAAATATCCAGCTTCAACCATTCAAATTCTCGGTGCTGAAAAAGC
CCTCTTCCGTGCCCTTAAAACTAAACATAACACTCCAAAATATGGTCTCATCTATAATGC
CAAGATCGTCGGTGAAGCTTCATTAAAGAACAAAGGTAAAATGTCTAGAGTTCTCGCCGC
TAAAGCTGCTTTATCCGCTCGTTTCGATGCTCTCTGTGAAGTCAGTGATACAAGTTATGG
TATCGCTTACAAAGGTGCTGTTGATCGTAGAGCCGCTGCTATTGAAGGTCGTGAAGTTAG
AAAATCATTAAATGCCGTCAAACCAGAGAAATCTGGTAATGTCGCCAAATATGATCATAC
TAAATCTGCCACTACAAATACCACCAGAGATGTTGCCACTAAATCCTCAAAAGAATCATC
AATTAAACAAGAGAAACAAGACGTTAAAATGGAAGAAGCCTCATCATNCTGACTNCTGAC
TCATCANCCGATTNCTGATTNCCNCTGAAGAAGAAAAATCAAAAAAANCAAAGAAANCAA
AGNAAAGAAGAAACNCCAGTGCCA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
vgllxkktitni*ikvaln*AITGLYIYKMLVLFETSAGFALFKVLDEGKMKSKPVDINN
FFETPEKASSFVSLKKFYKFDGTLDALEAQTAIAECKVPESLSNFLKKNVVSEKLNEQLI
VSDSKFGNAIKDALNIKVLCDDTTQELIRGIRLQLKSLVNANEQDLNAMSIGLSHSYSRY
KLKFSPDKVDTMIV---

---GSLMNLAKYPASTIQILGAEKALFRALKTKHNTPKYGLIYNAKIVGEASLKNKGKMS
RVLAAKAALSARFDALCEVSDTSYGIAYKGAVDRRAAAIEGREVRKSLNAVKPEKSGNVA
KYDHTKSATTNTTRDVATKSSKESSIKQEKQDVKMEEASSX*llthxpixdxx*rrkikk
xkexkxkkkxqc
Translated Amino Acid sequence (All Frames) 
Frame A:
vgllxkktitni*ikvaln*AITGLYIYKMLVLFETSAGFALFKVLDEGKMKSKPVDINN
FFETPEKASSFVSLKKFYKFDGTLDALEAQTAIAECKVPESLSNFLKKNVVSEKLNEQLI
VSDSKFGNAIKDALNIKVLCDDTTQELIRGIRLQLKSLVNANEQDLNAMSIGLSHSYSRY
KLKFSPDKVDTMIV---

---wfidefsqissfnhsnsrc*ksplpcp*n*t*hskiwshl*cqdrr*sfikeqr*nv
*ssrr*scfirsfrcsl*sq*yklwyrlqrcc*s*srcy*rs*s*kiikcrqtreiw*cr
qi*sy*ichykyhqrcch*ilkriin*tretrr*ngrslixltxdssxdx*xplkkknqk
xqrxqxkeetpvp

Frame B:
laywxkkr*ltyk*r*h*irl*ldyifikc*yylkhqqvlpysrfwmkvk*nqnqltsit
fskpqkklphlfh*rnfinlmvh*mh*khklqlqnvkfqnhyqtf*krmllvrn*mnn*l
lvivnlvmqsrth*iskfyvmillks*levfvyn*nhwsmqmnki*mpcqlvyhihtvdi
n*sshqirsiq*sf---

---GSLMNLAKYPASTIQILGAEKALFRALKTKHNTPKYGLIYNAKIVGEASLKNKGKMS
RVLAAKAALSARFDALCEVSDTSYGIAYKGAVDRRAAAIEGREVRKSLNAVKPEKSGNVA
KYDHTKSATTNTTRDVATKSSKESSIKQEKQDVKMEEASSX*llthxpixdxx*rrkikk
xkexkxkkkxqc

Frame C:
wptgkkndn*hinkgsiklgynwiiyl*nvsii*nisrfcliqgfg*r*neikts*hq*l
frnprksflicfikeil*i*wyircirstncncrm*ssriiiklfkkecc**eik*tinc
****iw*cnqgrikyqsfm**yysrvd*rysftieiigqck*trfechvnwfitfiq*i*
ikvltr*gryndrs---

---vh**i*pniqlqpfkfsvlkkpssvplklnitlqnmvssimprssvklh*rtkvkcl
efsplkllyplvsmlsvksviqvmvsltkvlliveplllkvvklenh*mpsnqrnlvmsp
nmiilnlplqippemlplnpqknhqlnkrnktlkwkkphhxdx*lixrxlixxeeekskk
xkkxkxrrnxsa
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFC303 (VFC303Q) /CSM/VF/VFC3-A/VFC303Q.Seq.d/                       2060   0.0
VFA259 (VFA259Q) /CSM/VF/VFA2-C/VFA259Q.Seq.d/                       1114   0.0
AFC277 (AFC277Q) /CSM/AF/AFC2-D/AFC277Q.Seq.d/                       1114   0.0
AFA368 (AFA368Q) /CSM/AF/AFA3-C/AFA368Q.Seq.d/                       1114   0.0
CFF804 (CFF804Q) /CSM/CF/CFF8-A/CFF804Q.Seq.d/                       1112   0.0
AFD369 (AFD369Q) /CSM/AF/AFD3-C/AFD369Q.Seq.d/                       1106   0.0
VFJ738 (VFJ738Q) /CSM/VF/VFJ7-B/VFJ738Q.Seq.d/                       1098   0.0
VHJ237 (VHJ237Q) /CSM/VH/VHJ2-B/VHJ237Q.Seq.d/                       1023   0.0
VFO752 (VFO752Q) /CSM/VF/VFO7-C/VFO752Q.Seq.d/                       1023   0.0
AFC662 (AFC662Q) /CSM/AF/AFC6-C/AFC662Q.Seq.d/                       1017   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BI500956|BI500956.1 kx26b07.y1 Parastrongyloides trichosuri PA pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to TR:O45012 O45012 W01B11.3 PROTEIN. [1] ;, mRNA sequence.    66  1e-11  2
BU791036|BU791036.1 81B10 flower bud cucumber cDNA B10 Lambda ZAP Library Cucumis sativus cDNA clone 81B10, mRNA sequence.    48  1e-04  2
BF187729|BF187729.1 EST444016 potato stolon, Cornell University Solanum tuberosum cDNA clone cSTA42I13 5' sequence, mRNA sequence.    56  0.001  1
AW907097|AW907097.1 EST343129 potato stolon, Cornell University Solanum tuberosum cDNA clone cSTA5C8, mRNA sequence.    56  0.001  1
BG597726|BG597726.1 EST496404 cSTS Solanum tuberosum cDNA clone cSTS18D12 5' sequence, mRNA sequence.    56  0.001  1
AW906350|AW906350.1 EST342472 potato stolon, Cornell University Solanum tuberosum cDNA clone cSTA3C3, mRNA sequence.    56  0.001  1
AB059832|AB059832.1 Nicotiana tabacum MARBPF mRNA for MAR-binding protein, complete cds.    56  0.001  1
BG593908|BG593908.1 EST492586 cSTS Solanum tuberosum cDNA clone cSTS5J22 5' sequence, mRNA sequence.    56  0.001  1
AW906668|AW906668.1 EST342790 potato stolon, Cornell University Solanum tuberosum cDNA clone cSTA4C11 similar to Oryza sativa SAR DNA binding protein, mRNA sequence.    56  0.001  1
BG887692|BG887692.1 EST513543 cSTD Solanum tuberosum cDNA clone cSTD6H16 5' sequence, mRNA sequence.    56  0.001  1
dna update 2003. 9.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55FI4) RecName: Full=Nucleolar protein 58; AltName: Full=Nucle...   320   5e-86
BC044082_1(BC044082|pid:none) Xenopus laevis similar to nucleola...   155   3e-36
BC106291_1(BC106291|pid:none) Xenopus laevis similar to nucleola...   155   3e-36
BC077204_1(BC077204|pid:none) Xenopus laevis MGC78950 protein, m...   154   4e-36
BC151884_1(BC151884|pid:none) Danio rerio NOP58 ribonucleoprotei...   154   4e-36
BC155194_1(BC155194|pid:none) Danio rerio NOP58 ribonucleoprotei...   154   4e-36
BC061961_1(BC061961|pid:none) Danio rerio NOP58 ribonucleoprotei...   154   4e-36
BC044394_1(BC044394|pid:none) Danio rerio NOP58 ribonucleoprotei...   154   4e-36
BC122512_1(BC122512|pid:none) Xenopus laevis MGC78950 protein, m...   154   4e-36
CR762270_1(CR762270|pid:none) Xenopus tropicalis finished cDNA, ...   154   7e-36
protein update 2009. 6.17
PSORT 

 psg: 0.85  gvh: 0.49  alm: 0.34  top: 0.47  tms: 0.00  mit: 0.14  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: mitochondrial
	  8.0 %: vesicles of secretory system
	  4.0 %: Golgi

>> prediction for VFC303 is cyt
5' end seq. ID VFC303F
5' end seq. 
>VFC303F.Seq
GTTGGCCTACTGGNAAAAAAAACGATAACTAACATATAAATAAAGGTAGCATTAAATTAG
GCTATAACTGGATTATATATTTATAAAATGTTAGTATTATTTGAAACATCAGCAGGTTTT
GCCTTATTCAAGGTTTTGGATGAAGGTAAAATGAAATCAAAACCAGTTGACATCAATAAC
TTTTTCGAAACCCCAGAAAAAGCTTCCTCATTTGTTTCATTAAAGAAATTTTATAAATTT
GATGGTACATTAGATGCATTAGAAGCACAAACTGCAATTGCAGAATGTAAAGTTCCAGAA
TCATTATCAAACTTTTTAAAAAAGAATGTTGTTAGTGAGAAATTAAATGAACAATTAATT
GTTAGTGATAGTAAATTTGGTAATGCAATCAAGGACGCATTAAATATCAAAGTTTTATGT
GATGATACTACTCAAGAGTTGATTAGAGGTATTCGTTTACAATTGAAATCATTGGTCAAT
GCAAATGAACAAGATTTGAATGCCATGTCAATTGGTTTATCACATTCATACAGTAGATAT
AAATTAAAGTTCTCACCAGATAAGGTCGATACAATGATCGTTCA----------
Length of 5' end seq. 584
3' end seq. ID VFC303Z
3' end seq. 
>VFC303Z.Seq
----------TGGTTCATTGATGAATTTAGCCAAATATCCAGCTTCAACCATTCAAATTC
TCGGTGCTGAAAAAGCCCTCTTCCGTGCCCTTAAAACTAAACATAACACTCCAAAATATG
GTCTCATCTATAATGCCAAGATCGTCGGTGAAGCTTCATTAAAGAACAAAGGTAAAATGT
CTAGAGTTCTCGCCGCTAAAGCTGCTTTATCCGCTCGTTTCGATGCTCTCTGTGAAGTCA
GTGATACAAGTTATGGTATCGCTTACAAAGGTGCTGTTGATCGTAGAGCCGCTGCTATTG
AAGGTCGTGAAGTTAGAAAATCATTAAATGCCGTCAAACCAGAGAAATCTGGTAATGTCG
CCAAATATGATCATACTAAATCTGCCACTACAAATACCACCAGAGATGTTGCCACTAAAT
CCTCAAAAGAATCATCAATTAAACAAGAGAAACAAGACGTTAAAATGGAAGAAGCCTCAT
CATNCTGACTNCTGACTCATCANCCGATTNCTGATTNCCNCTGAAGAAGAAAAATCAAAA
AAANCAAAGAAANCAAAGNAAAGAAGAAACNCCAGTGCCA
Length of 3' end seq. 570
Connected seq. ID VFC303P
Connected seq. 
>VFC303P.Seq
GTTGGCCTACTGGNAAAAAAAACGATAACTAACATATAAATAAAGGTAGCATTAAATTAG
GCTATAACTGGATTATATATTTATAAAATGTTAGTATTATTTGAAACATCAGCAGGTTTT
GCCTTATTCAAGGTTTTGGATGAAGGTAAAATGAAATCAAAACCAGTTGACATCAATAAC
TTTTTCGAAACCCCAGAAAAAGCTTCCTCATTTGTTTCATTAAAGAAATTTTATAAATTT
GATGGTACATTAGATGCATTAGAAGCACAAACTGCAATTGCAGAATGTAAAGTTCCAGAA
TCATTATCAAACTTTTTAAAAAAGAATGTTGTTAGTGAGAAATTAAATGAACAATTAATT
GTTAGTGATAGTAAATTTGGTAATGCAATCAAGGACGCATTAAATATCAAAGTTTTATGT
GATGATACTACTCAAGAGTTGATTAGAGGTATTCGTTTACAATTGAAATCATTGGTCAAT
GCAAATGAACAAGATTTGAATGCCATGTCAATTGGTTTATCACATTCATACAGTAGATAT
AAATTAAAGTTCTCACCAGATAAGGTCGATACAATGATCGTTCA----------TGGTTC
ATTGATGAATTTAGCCAAATATCCAGCTTCAACCATTCAAATTCTCGGTGCTGAAAAAGC
CCTCTTCCGTGCCCTTAAAACTAAACATAACACTCCAAAATATGGTCTCATCTATAATGC
CAAGATCGTCGGTGAAGCTTCATTAAAGAACAAAGGTAAAATGTCTAGAGTTCTCGCCGC
TAAAGCTGCTTTATCCGCTCGTTTCGATGCTCTCTGTGAAGTCAGTGATACAAGTTATGG
TATCGCTTACAAAGGTGCTGTTGATCGTAGAGCCGCTGCTATTGAAGGTCGTGAAGTTAG
AAAATCATTAAATGCCGTCAAACCAGAGAAATCTGGTAATGTCGCCAAATATGATCATAC
TAAATCTGCCACTACAAATACCACCAGAGATGTTGCCACTAAATCCTCAAAAGAATCATC
AATTAAACAAGAGAAACAAGACGTTAAAATGGAAGAAGCCTCATCATNCTGACTNCTGAC
TCATCANCCGATTNCTGATTNCCNCTGAAGAAGAAAAATCAAAAAAANCAAAGAAANCAA
AGNAAAGAAGAAACNCCAGTGCCA
Length of connected seq. 1154
Full length Seq ID -
Full length Seq. -
Length of full length seq. -