VFC278 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VFC278
Library	VF (Link to library)
Clone ID	VFC278 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U13504-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VF/VFC2-D/VFC278Q.Seq.d/
Representative seq. ID	VFC278E (Link to Original site)
Representative DNA sequence	>VFC278 (VFC278Q) /CSM/VF/VFC2-D/VFC278Q.Seq.d/ AGTTCTTTTCAATCGTGAAGGTGATCTCCTTTTCGTTGCAGCCAAAGNATAAACTCGTTT CATTATGGTACACTACAAATGGTGAAAGAATCGGTTCATATCAATGTGGTGGTGTAGTTT ATTCAATTGATGTTTCACAGGATTCTAAATATTTAATTACAGCATCAGCAGACGCCAAAG CAAGAGTTTGGGATGTCTCAAGTGGTAGACAATTAGATTCAACTGATTTTGAAGTATCAG CTCGTTCAATTGAATTTTCACAAGGCGACAAACAAATTTTAGTTGTCACTGATCAAGTTA TGGGTTGTCAAGCTAAAATCCATGTTTTCGATTTTGATAAAGATGAAGTTAGAAAACTCC AATAAATCTTACACATTACCATCACCACAATGTAAAATCACCCAAGCTACTTGGGGTCCA TTAAATAAAACTATTTTTGCTTCATGTGAAGATGGTGCCGTTCGTATTTATTGCACAGAG AAAAGAGAACTCATTAAAACTATCCTTGATCACAACAAATTAGTCACAAGAATTGAATGG ACTAAACATAGAATTATGTTTATGACTTGTTCAAAAGATGGTACTGCTAAATTATATGAC ACAAAAACATTAAAACTCTTAAGAACTTTCGATACTGGTCGTCCAATTAATGCAGCTGGT ATTTCACCACTTAAACCACACGTTATTCTTGGTGGTGGTCAATCAGCTGAATCTGTAACC ACAACCAAAGTAGATGCCTCTCAATTCAAAGTTAGATTTTTCCATATTGTTTATGGTGAA GAATTAGGTGGTTTAATTGGTCATATTGGTCCAGTTCACTCAATTTGTTTCACNCCAGAT GGTAAAACATTTGCAACTGGTGGTGAAGAAGGTNCTTGTTCAAGTTAATCATTTGGATGA ATCATATTTCGAATTTGATGACGATTTAGTTTATAACCCACCAGTTCAACATTAAAATA
sequence update	2001. 6. 9
Translated Amino Acid sequence	ssfqsrspfrcsqxinsfhygtlqmvkesvhinvvvfiqlmfhrilnilqhqqtpk qefgmsqvvdniqlilkyqlvqlnfhkatnkfLSLIKLWVVKLKSMFSILIKMKLENS NKSYTLPSPQCKITQATWGPLNKTIFASCEDGAVRIYCTEKRELIKTILDHNKLVTRIEW TKHRIMFMTCSKDGTAKLYDTKTLKLLRTFDTGRPINAAGISPLKPHVILGGGQSAESVT TTKVDASQFKVRFFHIVYGEELGGLIGHIGPVHSICFTPDGKTFATGGEEGXCSSsfg iifri*rfslptsstlk
Translated Amino Acid sequence (All Frames)	Frame A: ssfqsrspfrcsqxinsfhygtlqmvkesvhinvvvfiqlmfhrilnilqhqqtpk qefgmsqvvdniqlilkyqlvqlnfhkatnkfLSLIKLWVVKLKSMFSILIKMKLENS NKSYTLPSPQCKITQATWGPLNKTIFASCEDGAVRIYCTEKRELIKTILDHNKLVTRIEW TKHRIMFMTCSKDGTAKLYDTKTLKLLRTFDTGRPINAAGISPLKPHVILGGGQSAESVT TTKVDASQFKVRFFHIVYGEELGGLIGHIGPVHSICFTPDGKTFATGGEEGXCSSsfg iifri*rfslptsstlk Frame B: vlfnregdllfvaakxtrfimvhykwknrfismwwcslfncftgfifnysisrrqs kslgclkwtirfnfsissfniftrrqtnfschssyglssnpcfrf*rsktp inlthyhhhnvkspkllgvhiklfllhvkmvpfvfiaqrkenslklslittnsqelng lnielcllvqkmvllnymtqkhnselsilvvqlmqlvfhhlnhtlflvvvnqlnlp qpkmplnskldfsilfmvknvvlvilvqftqfvsxqmvkhlqlvvkkvlvqvnhlde syfefdddlvynppvqhn Frame C: ffsivkvisfslqpkxklvslwyttngerigsyqcggvvysidvsqdskylitasadaka rvwdvssgrqldstdfevsarsiefsqgdkqilvvtdqvmgcqakihvfdfdkdevrklq ilhitittmnhpsylgsiknyfcfmrwcrsyllhrekrthnypsqqishknmd tnyvydlfkrwyciihkniktlknfrywssncswyfttttryswwwsisicnh nqsrclsiqsifpyclwrirwfnwsywssslnlfhxrwnicnwwrrxlfkliiwmn hisnlmtifithqfniki
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VFC278 (VFC278Q) /CSM/VF/VFC2-D/VFC278Q.Seq.d/ 1883 0.0 CHD850 (CHD850Q) /CSM/CH/CHD8-C/CHD850Q.Seq.d/ 1842 0.0 VFB682 (VFB682Q) /CSM/VF/VFB6-D/VFB682Q.Seq.d/ 1836 0.0 VFB170 (VFB170Q) /CSM/VF/VFB1-C/VFB170Q.Seq.d/ 1824 0.0 VFB661 (VFB661Q) /CSM/VF/VFB6-C/VFB661Q.Seq.d/ 1822 0.0 AHG631 (AHG631Q) /CSM/AH/AHG6-B/AHG631Q.Seq.d/ 1822 0.0 VFJ162 (VFJ162Q) /CSM/VF/VFJ1-C/VFJ162Q.Seq.d/ 1804 0.0 VFN692 (VFN692Q) /CSM/VF/VFN6-D/VFN692Q.Seq.d/ 1782 0.0 VFO710 (VFO710Q) /CSM/VF/VFO7-A/VFO710Q.Seq.d/ 1750 0.0 VFF174 (VFF174Q) /CSM/VF/VFF1-D/VFF174Q.Seq.d/ 1733 0.0
own update	2002.12.15
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N Z99126\|Z99126.1 S.pombe chromosome I cosmid c26H5. 40 0.27 3 AC125602\|AC125602.3 Rattus norvegicus clone CH230-10G5, * SEQUENCING IN PROGRESS , 7 unordered pieces. 46 0.80 1 AC095636\|AC095636.8 Rattus norvegicus clone CH230-8K4, WORKING DRAFT SEQUENCE, 2 unordered pieces. 44 3.2 1 BX547996\|BX547996.1 Zebrafish DNA sequence SEQUENCING IN PROGRESS * from clone CH211-212H16. 44 3.2 1 AC121716\|AC121716.3 Rattus norvegicus clone CH230-117K2, * SEQUENCING IN PROGRESS *, 4 unordered pieces. 44 3.2 1 AV294183\|AV294183.1 Mus musculus 10 days neonate head cDNA, RIKEN full-length enriched library, clone:5530402E20, 3' end partial sequence, similar to ddbj:X77494 H.sapiens MSSP-2 mRNA. 44 3.2 1 AL008867\|AL008867.1 Caenorhabditis elegans cosmid C46E1. 44 3.2 1 BB404853\|BB404853.1 Mus musculus ES cells cDNA, RIKEN full-length enriched library, clone:C330038D05, 3' end partial sequence. 36 4.7 2 AC134711\|AC134711.2 Rattus norvegicus clone CH230-467J10, WORKING DRAFT SEQUENCE, 2 unordered pieces. 34 6.3 7 AB009314\|AB009314.1 Streptococcus bovis gene for proton-translocating ATPase subunits, complete cds. 42 8.2 2
dna update	2003. 9.11
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (Q54MT0) RecName: Full=Eukaryotic translation initiation factor ... 316 e-153 (B5FZ19) RecName: Full=Eukaryotic translation initiation factor ... 144 6e-50 AY888456_1(AY888456\|pid:none) Synthetic construct Homo sapiens c... 140 5e-49 AC124957_16(AC124957\|pid:none) Medicago truncatula clone mth2-15... 128 2e-48 EF146121_1(EF146121\|pid:none) Populus trichocarpa clone WS0115_K... 127 2e-48 AK172208_1(AK172208\|pid:none) Mus musculus activated spleen cDNA... 138 2e-48 (Q5E966) RecName: Full=Eukaryotic translation initiation factor ... 138 2e-48 (Q9QZD9) RecName: Full=Eukaryotic translation initiation factor ... 138 2e-48 (B0BNA7) RecName: Full=Eukaryotic translation initiation factor ... 137 5e-48 (Q5R7R2) RecName: Full=Eukaryotic translation initiation factor ... 136 7e-48
protein update	2009. 7.10
PSORT	psg: 0.84 gvh: 0.33 alm: 0.35 top: 0.53 tms: 0.00 mit: 0.32 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 52.0 %: cytoplasmic 24.0 %: nuclear 20.0 %: mitochondrial 4.0 %: plasma membrane >> prediction for VFC278 is cyt
5' end seq. ID	VFC278F
5' end seq.	>VFC278F.Seq AGTTCTTTTCAATCGTGAAGGTGATCTCCTTTTCGTTGCAGCCAAAGNATAAACTCGTTT CATTATGGTACACTACAAATGGTGAAAGAATCGGTTCATATCAATGTGGTGGTGTAGTTT ATTCAATTGATGTTTCACAGGATTCTAAATATTTAATTACAGCATCAGCAGACGCCAAAG CAAGAGTTTGGGATGTCTCAAGTGGTAGACAATTAGATTCAACTGATTTTGAAGTATCAG CTCGTTCAATTGAATTTTCACAAGGCGACAAACAAATTTTAGTTGTCACTGATCAAGTTA TGGGTTGTCAAGCTAAAATCCATGTTTTCGATTTTGATAAAGATGAAGTTAGAAAACTCA ATANATCTTACACATTACCATCACCACAATGTAAAATCACCC----------
Length of 5' end seq.	402
3' end seq. ID	VFC278Z
3' end seq.	>VFC278Z.Seq ----------AGTTAGAAAACTCCAATAAATCTTACACATTACCATCACCACAATGTAAA ATCACCCAAGCTACTTGGGGTCCATTAAATAAAACTATTTTTGCTTCATGTGAAGATGGT GCCGTTCGTATTTATTGCACAGAGAAAAGAGAACTCATTAAAACTATCCTTGATCACAAC AAATTAGTCACAAGAATTGAATGGACTAAACATAGAATTATGTTTATGACTTGTTCAAAA GATGGTACTGCTAAATTATATGACACAAAAACATTAAAACTCTTAAGAACTTTCGATACT GGTCGTCCAATTAATGCAGCTGGTATTTCACCACTTAAACCACACGTTATTCTTGGTGGT GGTCAATCAGCTGAATCTGTAACCACAACCAAAGTAGATGCCTCTCAATTCAAAGTTAGA TTTTTCCATATTGTTTATGGTGAAGAATTAGGTGGTTTAATTGGTCATATTGGTCCAGTT CACTCAATTTGTTTCACNCCAGATGGTAAAACATTTGCAACTGGTGGTGAAGAAGGTNCT TGTTCAAGTTAATCATTTGGATGAATCATATTTCGAATTTGATGACGATTTAGTTTATAA CCCACCAGTTCAACATTAAAATA
Length of 3' end seq.	613
Connected seq. ID	VFC278P
Connected seq.	>VFC278P.Seq AGTTCTTTTCAATCGTGAAGGTGATCTCCTTTTCGTTGCAGCCAAAGNATAAACTCGTTT CATTATGGTACACTACAAATGGTGAAAGAATCGGTTCATATCAATGTGGTGGTGTAGTTT ATTCAATTGATGTTTCACAGGATTCTAAATATTTAATTACAGCATCAGCAGACGCCAAAG CAAGAGTTTGGGATGTCTCAAGTGGTAGACAATTAGATTCAACTGATTTTGAAGTATCAG CTCGTTCAATTGAATTTTCACAAGGCGACAAACAAATTTTAGTTGTCACTGATCAAGTTA TGGGTTGTCAAGCTAAAATCCATGTTTTCGATTTTGATAAAGATGAAGTTAGAAAACTCA ATANATCTTACACATTACCATCACCACAATGTAAAATCACCC----------AGTTAGAA AACTCCAATAAATCTTACACATTACCATCACCACAATGTAAAATCACCCAAGCTACTTGG GGTCCATTAAATAAAACTATTTTTGCTTCATGTGAAGATGGTGCCGTTCGTATTTATTGC ACAGAGAAAAGAGAACTCATTAAAACTATCCTTGATCACAACAAATTAGTCACAAGAATT GAATGGACTAAACATAGAATTATGTTTATGACTTGTTCAAAAGATGGTACTGCTAAATTA TATGACACAAAAACATTAAAACTCTTAAGAACTTTCGATACTGGTCGTCCAATTAATGCA GCTGGTATTTCACCACTTAAACCACACGTTATTCTTGGTGGTGGTCAATCAGCTGAATCT GTAACCACAACCAAAGTAGATGCCTCTCAATTCAAAGTTAGATTTTTCCATATTGTTTAT GGTGAAGAATTAGGTGGTTTAATTGGTCATATTGGTCCAGTTCACTCAATTTGTTTCACN CCAGATGGTAAAACATTTGCAACTGGTGGTGAAGAAGGTNCTTGTTCAAGTTAATCATTT GGATGAATCATATTTCGAATTTGATGACGATTTAGTTTATAACCCACCAGTTCAACATTA AAATA
Length of connected seq.	1015
Full length Seq ID	VFC278E
Full length Seq.	>VFC278E.Seq AGTTCTTTTCAATCGTGAAGGTGATCTCCTTTTCGTTGCAGCCAAAGNATAAACTCGTTT CATTATGGTACACTACAAATGGTGAAAGAATCGGTTCATATCAATGTGGTGGTGTAGTTT ATTCAATTGATGTTTCACAGGATTCTAAATATTTAATTACAGCATCAGCAGACGCCAAAG CAAGAGTTTGGGATGTCTCAAGTGGTAGACAATTAGATTCAACTGATTTTGAAGTATCAG CTCGTTCAATTGAATTTTCACAAGGCGACAAACAAATTTTAGTTGTCACTGATCAAGTTA TGGGTTGTCAAGCTAAAATCCATGTTTTCGATTTTGATAAAGATGAAGTTAGAAAACTCC AATAAATCTTACACATTACCATCACCACAATGTAAAATCACCCAAGCTACTTGGGGTCCA TTAAATAAAACTATTTTTGCTTCATGTGAAGATGGTGCCGTTCGTATTTATTGCACAGAG AAAAGAGAACTCATTAAAACTATCCTTGATCACAACAAATTAGTCACAAGAATTGAATGG ACTAAACATAGAATTATGTTTATGACTTGTTCAAAAGATGGTACTGCTAAATTATATGAC ACAAAAACATTAAAACTCTTAAGAACTTTCGATACTGGTCGTCCAATTAATGCAGCTGGT ATTTCACCACTTAAACCACACGTTATTCTTGGTGGTGGTCAATCAGCTGAATCTGTAACC ACAACCAAAGTAGATGCCTCTCAATTCAAAGTTAGATTTTTCCATATTGTTTATGGTGAA GAATTAGGTGGTTTAATTGGTCATATTGGTCCAGTTCACTCAATTTGTTTCACNCCAGAT GGTAAAACATTTGCAACTGGTGGTGAAGAAGGTNCTTGTTCAAGTTAATCATTTGGATGA ATCATATTTCGAATTTGATGACGATTTAGTTTATAACCCACCAGTTCAACATTAAAATA
Length of full length seq.	959

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas