VFC273
Library VF
(Link to library)
Clone ID VFC273
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16382-1
Original site URL
Representative seq. ID VFC273P
(Link to Original site)
Representative DNA sequence
>VFC273 (VFC273Q) /CSM/VF/VFC2-D/VFC273Q.Seq.d/
ACTGTTGGCCTACTGGNATAGTTTTAATAAACAAATATTTAAATATAATACAACAATAAA
ATGGACGGTGAAGATGTTCAAGCTTTAGTTATCGATAATGGTTCTGGTATGTGTAAAGCC
GGTTTTGCTGGTGATGATGCCCCACGTGCTGTTTTCCCATCAATTGTTGGTCGTCCAAGA
CACACTGGTGTTATGGTCGGTATGGGTCAAAAAGACTCTTACGTAGGTGATGAAGCCCAA
TCAAAGAGAGGTATCTTAACCCTCAAATACCCAATTGAACACGGTATTGTTACCAACTGG
GATGATATGGAAAAAATCTGGCATCATACTTTCTACAATGAACTCCGTGTTGCTCCAGAA
GAACACCCAGTTCTCTTAACTGAAGCCCCATTAAATCCAAAGGCCAACAGAGAAAAAATG
ACCCAAATTATGTTTGAAACCTTCAACACCCCAGCCATGTACGTTGCCATTCAAGCTGNC
TTATCCTTATATGCCTCTGGTCGNACCACCGGTATTGTTATGGATTCAGGTGATGGNGXX
XXXXXXXXAACTGAACGTGGTTACTCATTCACCACCACTGCTGAAAGAGAAATCGTCAGA
GATATCAAAGAAAAATTAGCCTACGTCGCCCTCGACTTTGAAGCTGAAATGCAAACTGCT
GCCTCATCATCAGCCCTCGAAAAATCATACGAATTACCAGACGGTCAAGTCATCACCATC
GGTAATGAACGTTTCCGTTGCCCAGAAGCCCTCTTCCAACCATCATTCTTAGGTATGGAA
TCAGCTGGTATCCACGAAACCACCTATAACTCCATCATGAAATGTGATGTTGATATCCGT
AAAGATTTATACGGTAATGTCGTCTTATCTGGTGGTACAACTATGTTCCCAGGTATTGCT
GATCGTATGAACAAAGAATTAACTGCTTTAGCCCCATCAACCATGAAAATTAAAATCATT
GCTCCACCAGAACGTAAATACTCTGTCTGGATTGGTGGATCTATCTTAGCTTCACTCTCA
ACTTTCCAACAAATGTGGATCTCCAAAGAAGAATATGACGAATCAGGTCCATCAATTGTC
CACAGAAAATGTTTCTAAACAATTAAAACTAGTGATGAAAGTGCTTNCTCACACAAACAA
ATATATTTAAATGTATAATAATAATAAAATATAATTNNTTT
sequence update 2001. 6. 1
Translated Amino Acid sequence
tvgllx*f**tni*i*YNNKMDGEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPR
HTGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE
EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAXLSLYASGRTTGIVMDSGDG-
--

---TERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYELPDGQVITI
GNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIA
DRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIV
HRKCF*tiktsdesaxshkqiylnv****niix


Translated Amino Acid sequence (All Frames)
Frame A:
tvgllx*f**tni*i*YNNKMDGEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPR
HTGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE
EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAXLSLYASGRTTGIVMDSGDG-
--

---n*twllihhhc*krnrqryqrkislrrprl*s*nanccliisprkiiritrrsshhh
r**tfplprsplptiilrygiswyprnhl*lhhem*c*yp*rfir*crliwwynyvpryc
*syeqrincfspinhen*nhcstrt*ilcldwwiylsftlnfptnvdlqrri*rirsinc
pqkmflnn*n***kcxltqtnifkciiiikynxf

Frame B:
llaywxsfnkqifkynttikwtvkmfkl*lsimvlvcvkpvllvmmphvlfshqllvvqd
tlvlwsvwvkktlt*vmkpnqrevs*psntqlntvllptgmiwkksgiilstmnsvllqk
ntqfs*lkph*iqrptekk*pklclkpstpqpctlpfklxypymplvxppvllwiqvmx-
--

---TERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYELPDGQVITI
GNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIA
DRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIV
HRKCF*tiktsdesaxshkqiylnv****niix

Frame C:
cwptgivlinkylniiqq*ngr*rcssfsyr*wfwyv*srfcw**cptccfpincwsskt
hwcygrygskrllrr**spikerylnpqipn*trycyqlg*ygknlasyflq*tpccsrr
tpssln*spikskgqqrkndpnyv*nlqhpshvrchssxliliclwsxhrycygfr*w--
-

---lnvvthsppllkeksseiskkn*ptspstlklkckllphhqpsknhtnyqtvkssps
vmnvsvaqkpssnhhs*vwnqlvstkppitps*nvmlisvkiytvmssylvvqlcsqvll
iv*tkn*ll*phqp*klksllhqnvntlsglvdls*lhsqlsnkcgspkknmtnqvhqls
tenvskqlklvmkvlxhtnkyi*mynnnki*xx

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFC273 (VFC273Q) /CSM/VF/VFC2-D/VFC273Q.Seq.d/ 2238 0.0
VFH274 (VFH274Q) /CSM/VF/VFH2-D/VFH274Q.Seq.d/ 1229 0.0
SLH431 (SLH431Q) /CSM/SL/SLH4-B/SLH431Q.Seq.d/ 1225 0.0
SLH418 (SLH418Q) /CSM/SL/SLH4-A/SLH418Q.Seq.d/ 1225 0.0
SLC856 (SLC856Q) /CSM/SL/SLC8-C/SLC856Q.Seq.d/ 1225 0.0
SLC191 (SLC191Q) /CSM/SL/SLC1-D/SLC191Q.Seq.d/ 1225 0.0
SLC167 (SLC167Q) /CSM/SL/SLC1-C/SLC167Q.Seq.d/ 1225 0.0
SLB167 (SLB167Q) /CSM/SL/SLB1-C/SLB167Q.Seq.d/ 1225 0.0
SLB157 (SLB157Q) /CSM/SL/SLB1-C/SLB157Q.Seq.d/ 1225 0.0
VFM705 (VFM705Q) /CSM/VF/VFM7-A/VFM705Q.Seq.d/ 1223 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 1146 0.0 5
X03281|X03281.1 Dictyostelium discoideum gene for actin A8. 1035 0.0 2
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 979 0.0 5
M14146|M14146.1 D.discoideum actin 15 gene, complete cds. 973 0.0 4
AC115579|AC115579.2 Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence. 973 0.0 6
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 839 0.0 13
U25660|U25660.1 Dictyostelium discoideum actin gene, partial cds. 803 0.0 2
X03282|X03282.1 dictyostelium discoideum gene for actin A12. 789 0.0 2
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence. 783 0.0 9
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 686 0.0 5
dna update 2003. 9.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54H30) RecName: Full=Major actin; AltName: Full=Actin-1; AltNa... 669 0.0
(Q553U6) RecName: Full=Putative actin-22; &AC116305_3(AC116305|... 665 0.0
B23412(B23412)actin 12 - slime mold (Dictyostelium discoideum) 664 0.0
(P02576) RecName: Full=Actin, plasmodial isoform; &ATFY(A29044;... 663 0.0
ATDO(A93223;A92871;S67999;A03004)actin - slime mold (Dictyosteli... 663 0.0
X03282_1(X03282|pid:none) dictyostelium discoideum gene for acti... 663 0.0
(P07829) RecName: Full=Actin-3; AltName: Full=Actin-3-sub 1; 653 0.0
AY294154_1(AY294154|pid:none) Thecamoeba similis actin mRNA, com... 652 0.0
(P02578) RecName: Full=Actin-1; &ATAX(A92886;A03004) &V00002_1(... 650 0.0
AF082863_1(AF082863|pid:none) Dreissena polymorpha cytoplasmic a... 642 0.0
protein update 2009. 6.17
PSORT

psg: 0.75 gvh: 0.34 alm: 0.46 top: 0.53 tms: 0.00 mit: 0.15 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: nuclear
32.0 %: cytoplasmic
20.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for VFC273 is nuc

5' end seq. ID VFC273F
5' end seq.
>VFC273F.Seq
ACTGTTGGCCTACTGGNATAGTTTTAATAAACAAATATTTAAATATAATACAACAATAAA
ATGGACGGTGAAGATGTTCAAGCTTTAGTTATCGATAATGGTTCTGGTATGTGTAAAGCC
GGTTTTGCTGGTGATGATGCCCCACGTGCTGTTTTCCCATCAATTGTTGGTCGTCCAAGA
CACACTGGTGTTATGGTCGGTATGGGTCAAAAAGACTCTTACGTAGGTGATGAAGCCCAA
TCAAAGAGAGGTATCTTAACCCTCAAATACCCAATTGAACACGGTATTGTTACCAACTGG
GATGATATGGAAAAAATCTGGCATCATACTTTCTACAATGAACTCCGTGTTGCTCCAGAA
GAACACCCAGTTCTCTTAACTGAAGCCCCATTAAATCCAAAGGCCAACAGAGAAAAAATG
ACCCAAATTATGTTTGAAACCTTCAACACCCCAGCCATGTACGTTGCCATTCAAGCTGNC
TTATCCTTATATGCCTCTGGTCGNACCACCGGTATTGTTATGGATTCAGGTGATGGNG--
--------
Length of 5' end seq. 538
3' end seq. ID VFC273Z
3' end seq.
>VFC273Z.Seq
----------AACTGAACGTGGTTACTCATTCACCACCACTGCTGAAAGAGAAATCGTCA
GAGATATCAAAGAAAAATTAGCCTACGTCGCCCTCGACTTTGAAGCTGAAATGCAAACTG
CTGCCTCATCATCAGCCCTCGAAAAATCATACGAATTACCAGACGGTCAAGTCATCACCA
TCGGTAATGAACGTTTCCGTTGCCCAGAAGCCCTCTTCCAACCATCATTCTTAGGTATGG
AATCAGCTGGTATCCACGAAACCACCTATAACTCCATCATGAAATGTGATGTTGATATCC
GTAAAGATTTATACGGTAATGTCGTCTTATCTGGTGGTACAACTATGTTCCCAGGTATTG
CTGATCGTATGAACAAAGAATTAACTGCTTTAGCCCCATCAACCATGAAAATTAAAATCA
TTGCTCCACCAGAACGTAAATACTCTGTCTGGATTGGTGGATCTATCTTAGCTTCACTCT
CAACTTTCCAACAAATGTGGATCTCCAAAGAAGAATATGACGAATCAGGTCCATCAATTG
TCCACAGAAAATGTTTCTAAACAATTAAAACTAGTGATGAAAGTGCTTNCTCACACAAAC
AAATATATTTAAATGTATAATAATAATAAAATATAATTNNTTT
Length of 3' end seq. 633
Connected seq. ID VFC273P
Connected seq.
>VFC273P.Seq
ACTGTTGGCCTACTGGNATAGTTTTAATAAACAAATATTTAAATATAATACAACAATAAA
ATGGACGGTGAAGATGTTCAAGCTTTAGTTATCGATAATGGTTCTGGTATGTGTAAAGCC
GGTTTTGCTGGTGATGATGCCCCACGTGCTGTTTTCCCATCAATTGTTGGTCGTCCAAGA
CACACTGGTGTTATGGTCGGTATGGGTCAAAAAGACTCTTACGTAGGTGATGAAGCCCAA
TCAAAGAGAGGTATCTTAACCCTCAAATACCCAATTGAACACGGTATTGTTACCAACTGG
GATGATATGGAAAAAATCTGGCATCATACTTTCTACAATGAACTCCGTGTTGCTCCAGAA
GAACACCCAGTTCTCTTAACTGAAGCCCCATTAAATCCAAAGGCCAACAGAGAAAAAATG
ACCCAAATTATGTTTGAAACCTTCAACACCCCAGCCATGTACGTTGCCATTCAAGCTGNC
TTATCCTTATATGCCTCTGGTCGNACCACCGGTATTGTTATGGATTCAGGTGATGGNG--
--------AACTGAACGTGGTTACTCATTCACCACCACTGCTGAAAGAGAAATCGTCAGA
GATATCAAAGAAAAATTAGCCTACGTCGCCCTCGACTTTGAAGCTGAAATGCAAACTGCT
GCCTCATCATCAGCCCTCGAAAAATCATACGAATTACCAGACGGTCAAGTCATCACCATC
GGTAATGAACGTTTCCGTTGCCCAGAAGCCCTCTTCCAACCATCATTCTTAGGTATGGAA
TCAGCTGGTATCCACGAAACCACCTATAACTCCATCATGAAATGTGATGTTGATATCCGT
AAAGATTTATACGGTAATGTCGTCTTATCTGGTGGTACAACTATGTTCCCAGGTATTGCT
GATCGTATGAACAAAGAATTAACTGCTTTAGCCCCATCAACCATGAAAATTAAAATCATT
GCTCCACCAGAACGTAAATACTCTGTCTGGATTGGTGGATCTATCTTAGCTTCACTCTCA
ACTTTCCAACAAATGTGGATCTCCAAAGAAGAATATGACGAATCAGGTCCATCAATTGTC
CACAGAAAATGTTTCTAAACAATTAAAACTAGTGATGAAAGTGCTTNCTCACACAAACAA
ATATATTTAAATGTATAATAATAATAAAATATAATTNNTTT
Length of connected seq. 1171
Full length Seq ID -
Full length Seq. -
Length of full length seq. -