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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFC265
Library VF
(Link to library)
Clone ID VFC265
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16459-1
Original site URL
Representative seq. ID VFC265Z
(Link to Original site)
Representative DNA sequence 
>VFC265 (VFC265Q) /CSM/VF/VFC2-C/VFC265Q.Seq.d/
XXXXXXXXXXTNCTGGAAAGAGAATATCTCANAATTNNNAGANAACAACTATCAAGTCAT
TNNACNCTNACATCANATTTTAANGACAAGTCNNTCAACTCCACTTCAATTATCAATTGC
ATGTCATGATCCTTGGTGAATTCGTTAGNCATCATAGTCGTGGTAAAGCTATCATCGNCC
TATTTACAAATCAANGCCAGATATGCATGGGTATGATGTCNAATCAAAATGAAGAAGTAA
AGAAACAAGCTTTATTCGCTTTNCAAAAAATGATGTTAAATAATTGGG
sequence update 2001. 6. 1
Translated Amino Acid sequence 
---xgkrisxnxxxttiksxxxxixf*XQVXQLHFNYQLHVMILGEFVXHHSRGKAIIXL
FTNQXQICMGMMSNQNEEVKKQALFAXQKMMLNNW
Translated Amino Acid sequence (All Frames) 
Frame A:
---xgkrisxnxxxttiksxxxxixf*XQVXQLHFNYQLHVMILGEFVXHHSRGKAIIXL
FTNQXQICMGMMSNQNEEVKKQALFAXQKMMLNNW


Frame B:
---lereylxixrxqlsshxtltsxfxdksxnstsiincms*slvnslxiivvvklssxy
lqixaryawv*cxikmkk*rnklyslxkk*c*iig


Frame C:
---wkenisxxxxnnyqvixxxhxilxtsxstplqlsiachdpw*ir*xs*sw*syhrpi
yksxpdmhgydvxsk*rsketsfirfxkndvk*l
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFC265 (VFC265Q) /CSM/VF/VFC2-C/VFC265Q.Seq.d/                        440   e-123
VSH764 (VSH764Q) /CSM/VS/VSH7-C/VSH764Q.Seq.d/                        377   e-104
VSB603 (VSB603Q) /CSM/VS/VSB6-A/VSB603Q.Seq.d/                        377   e-104
VFJ407 (VFJ407Q) /CSM/VF/VFJ4-A/VFJ407Q.Seq.d/                        377   e-104
SSE568 (SSE568Q) /CSM/SS/SSE5-C/SSE568Q.Seq.d/                        377   e-104
SLH796 (SLH796Q) /CSM/SL/SLH7-D/SLH796Q.Seq.d/                        377   e-104
SLG610 (SLG610Q) /CSM/SL/SLG6-A/SLG610Q.Seq.d/                        377   e-104
SFH779 (SFH779Q) /CSM/SF/SFH7-D/SFH779Q.Seq.d/                        377   e-104
VFK361 (VFK361Q) /CSM/VF/VFK3-C/VFK361Q.Seq.d/                        373   e-102
VFE191 (VFE191Q) /CSM/VF/VFE1-D/VFE191Q.Seq.d/                        369   e-101
own update 2001.11.27
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC123513|AC123513.1 Dictyostelium discoideum chromosome 2 map 2779865-2840915 strain AX4, *** SEQUENCING IN PROGRESS ***.   159  9e-77  4
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.   159  1e-75  4
AC129616|AC129616.5 Rattus norvegicus clone CH230-506P15, WORKING DRAFT SEQUENCE, 1 ordered piece.    42  3.6  1
AC120332|AC120332.4 Rattus norvegicus clone CH230-213A22, WORKING DRAFT SEQUENCE, 4 unordered pieces.    42  3.6  1
AC096158|AC096158.6 Rattus norvegicus clone CH230-11D17, WORKING DRAFT SEQUENCE, 5 unordered pieces.    42  4.9  2
AC027039|AC027039.2 Homo sapiens clone RP11-26N11, WORKING DRAFT SEQUENCE, 17 unordered pieces.    40     14  1
AB051012|AB051012.1 Paramecium caudatum nap1 gene for nucleosome assembly protein 1, complete cds.    40     14  1
AB023080|AB023080.1 Paramecium caudatum gene for hemoglobin, complete cds.    40     14  1
CC382279|CC382279.1 PUHOG50TB ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa496J03, DNA sequence.    40     14  1
BX167010|BX167010.1 Danio rerio genomic clone DKEY-156D20, genomic survey sequence.    40     14  1
dna update 2003. 9.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001324_466(CP001324|pid:none) Micromonas sp. RCC299 chromosome...    38   3e-04
BC091718_1(BC091718|pid:none) Xenopus laevis hypothetical protei...    46   5e-04
BC170668_1(BC170668|pid:none) Xenopus tropicalis ATPase, H+ tran...    46   5e-04
AJ223758_1(AJ223758|pid:none) Sus scrofa mRNA for 54 kDa vacuola...    45   8e-04
(Q8BVE3) RecName: Full=V-type proton ATPase subunit H;          ...    45   8e-04
AK303229_1(AK303229|pid:none) Homo sapiens cDNA FLJ58444 complet...    45   8e-04
AF132945_1(AF132945|pid:none) Homo sapiens CGI-11 protein mRNA, ...    45   8e-04
(O46563) RecName: Full=V-type proton ATPase subunit H;          ...    45   8e-04
CR859724_1(CR859724|pid:none) Pongo abelii mRNA; cDNA DKFZp468E0...    45   8e-04
AJ223757_1(AJ223757|pid:none) Sus scrofa mRNA for 54 kDa vacuola...    45   8e-04
protein update 2009. 6.17
PSORT 

 psg: 0.84  gvh: 0.43  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for VFC265 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VFC265Z
3' end seq. 
>VFC265Z.Seq
----------TNCTGGAAAGAGAATATCTCANAATTNNNAGANAACAACTATCAAGTCAT
TNNACNCTNACATCANATTTTAANGACAAGTCNNTCAACTCCACTTCAATTATCAATTGC
ATGTCATGATCCTTGGTGAATTCGTTAGNCATCATAGTCGTGGTAAAGCTATCATCGNCC
TATTTACAAATCAANGCCAGATATGCATGGGTATGATGTCNAATCAAAATGAAGAAGTAA
AGAAACAAGCTTTATTCGCTTTNCAAAAAATGATGTTAAATAATTGGG
Length of 3' end seq. 278
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -