NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFC260
Library VF
(Link to library)
Clone ID VFC260
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14968-1
Original site URL
Representative seq. ID VFC260P
(Link to Original site)
Representative DNA sequence 
>VFC260 (VFC260Q) /CSM/VF/VFC2-C/VFC260Q.Seq.d/
AAATTTCAATTCCCAACACACACAACAAAATAAAATGAGCACAGAAGGTAAAGTTATTAC
ATGTAAAGCAGCAGTGGCTTGGGAAGCCAAGAAACCATTGGTAATTGAAGATATTGAAGT
TCAACCACCACAAAAAGGTGAAGTCAGAATTAAAATTTTATATACTGGTGTTTGTCATAC
AGATTCATATACATTAAGTGGTAGTGATCCAGAAGGTATTTTTCCATGTATTTTAGGACA
TGAANGTGGTGGTATTGTTGAGAGTATTGGTGAAGGTGTTACAAXXXXXXXXXXGATTAT
TCATTCGAATGTATAGGTAATGTCAATGTAATGAGAGCCGCTTTGGAATGTTGTCATAAA
GGTTNGGGTGTTTCAACCATTGTTGGTGTTGCTCCTGCTGGTGCTGAAATTTCAACTCGT
CCATTCCAATTGGTAACCGGTCGTGTTTGGAAAGGTTCTGCTTTTGGTGGTGTAAAAAGT
CGTTCTCAACTCCCATCAATCATTGATAAATATATGGATAAGAAATTAAAAGTTGATGAA
TATGTTACCCTTACATATCCATTAAATGAAATTAATACTGCATTTGATGTTANGCATGAA
GGTAAAAGNCCCCGTNCAGTTGTAAACCCCATAAAAAAAAANAAAAAAAAAAAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
NFNSQHTQQNKMSTEGKVITCKAAVAWEAKKPLVIEDIEVQPPQKGEVRIKILYTGVCHT
DSYTLSGSDPEGIFPCILGHEXGGIVESIGEGVT---

---DYSFECIGNVNVMRAALECCHKGXGVSTIVGVAPAGAEISTRPFQLVTGRVWKGSAF
GGVKSRSQLPSIIDKYMDKKLKVDEYVTLTYPLNEINTAFDVXHEGKXPRXVVNPIKKXK
KKK
Translated Amino Acid sequence (All Frames) 
Frame A:
kfqfpthttk*nehrr*syym*sssglgsqetign*ry*sstttkr*sqn*nfiywclsy
rfiyikw**srryfsmyfrt*xwwyc*eyw*rcy---

---DYSFECIGNVNVMRAALECCHKGXGVSTIVGVAPAGAEISTRPFQLVTGRVWKGSAF
GGVKSRSQLPSIIDKYMDKKLKVDEYVTLTYPLNEINTAFDVXHEGKXPRXVVNPIKKXK
KKK

Frame B:
NFNSQHTQQNKMSTEGKVITCKAAVAWEAKKPLVIEDIEVQPPQKGEVRIKILYTGVCHT
DSYTLSGSDPEGIFPCILGHEXGGIVESIGEGVT---

---iihsnv*vmsm**eplwnvvikvxvfqpllvllllvlkfqlvhsnw*pvvfgkvlll
vv*kvvlnshqsliniwirn*klmnmlplhih*mklilhlmlxmkvkxpvql*tp*kkxk
kkk

Frame C:
isipnthnkik*aqkvkllhvkqqwlgkprnhw*lkilkfnhhkkvkselkfyilvfviq
ihih*vvviqkvffhvf*dmxvvvllrvlvkvlq---

---lfirmyr*cqcnesrfgmls*rxgcfnhcwccscwc*nfnssipignrsclerfcfw
wckksfstpinh**iyg*eiks**icypyisik*n*yci*cxa*r*kxpxsckphkkkxk
kk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFC260 (VFC260Q) /CSM/VF/VFC2-C/VFC260Q.Seq.d/                       1164   0.0
VFF764 (VFF764Q) /CSM/VF/VFF7-C/VFF764Q.Seq.d/                        622   e-177
SLA796 (SLA796Q) /CSM/SL/SLA7-D/SLA796Q.Seq.d/                        622   e-177
SFK659 (SFK659Q) /CSM/SF/SFK6-C/SFK659Q.Seq.d/                        622   e-177
SFG865 (SFG865Q) /CSM/SF/SFG8-C/SFG865Q.Seq.d/                        622   e-177
CFJ137 (CFJ137Q) /CSM/CF/CFJ1-B/CFJ137Q.Seq.d/                        622   e-177
VFI579 (VFI579Q) /CSM/VF/VFI5-D/VFI579Q.Seq.d/                        605   e-172
VFH604 (VFH604Q) /CSM/VF/VFH6-A/VFH604Q.Seq.d/                        603   e-171
VFC415 (VFC415Q) /CSM/VF/VFC4-A/VFC415Q.Seq.d/                        601   e-171
VFG877 (VFG877Q) /CSM/VF/VFG8-D/VFG877Q.Seq.d/                        599   e-170
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

M58332|M58332.1 C.maltosa formaldehyde resistance (fahR) gene, complete cds.    74  5e-24  4
U89767|U89767.1 Anabaena azollae glutathione dependent formaldehyde dehydrogenase (GDFALDH) gene, complete cds.    64  3e-21  5
AB085186|AB085186.1 Candida boidinii FLD1 gene for formaldehyde dehydrogenase, complete cds.    48  6e-18  6
AL162756|AL162756.2 Neisseria meningitidis serogroup A strain Z2491 complete genome;  segment 5/7.    84  2e-12  1
AE002479|AE002479.1 Neisseria meningitidis serogroup B strain MC58 section 121 of 206 of the complete genome.    84  2e-12  1
U32703|U32703.1 Haemophilus influenzae Rd section 18 of 163 of the complete genome.    84  2e-12  1
AX044032|AX044032.1 Sequence 111 from Patent WO0066791.           84  2e-09  3
X73835|X73835.1 E.coli plasmid DNA for formaldehyde-dehydrogenase.    68  1e-07  1
BQ586813|BQ586813.1 E012390-024-012-F09-SP6 MPIZ-ADIS-024-leaf Beta vulgaris cDNA clone 024-012-F09 5-PRIME, mRNA sequence.    68  1e-07  1
BI511523|BI511523.1 BB160006A10F10.5 Bee Brain Normalized Library, BB16 Apis mellifera cDNA clone BB160006A10F10 5', mRNA sequence.    58  7e-07  2
dna update 2003. 9.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000388_1816(CP000388|pid:none) Pseudoalteromonas atlantica T6c...   169   7e-41
AM286690_117(AM286690|pid:none) Alcanivorax borkumensis SK2, com...   169   9e-41
DQ268847_1(DQ268847|pid:none) Solanum tuberosum clone 150H03 alc...   167   2e-40
GM958396_1(GM958396|pid:none) Sequence 5350 from Patent WO200814...   166   4e-40
U63931_1(U63931|pid:none) Arabidopsis thaliana glutathione-depen...   166   4e-40
GN105349_1(GN105349|pid:none) Sequence 10130 from Patent WO20090...   166   4e-40
(Q96533) RecName: Full=Alcohol dehydrogenase class-3;          E...   166   4e-40
AK229996_1(AK229996|pid:none) Arabidopsis thaliana mRNA for alco...   166   4e-40
AM463239_1(AM463239|pid:none) Vitis vinifera contig VV78X089455....   166   6e-40
AY941369_2(AY941369|pid:none) Lycopersicon peruvianum putative a...   166   7e-40
protein update 2009. 6.17
PSORT 

 psg: 0.70  gvh: 0.41  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.08  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 40.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for VFC260 is nuc
5' end seq. ID VFC260F
5' end seq. 
>VFC260F.Seq
AAATTTCAATTCCCAACACACACAACAAAATAAAATGAGCACAGAAGGTAAAGTTATTAC
ATGTAAAGCAGCAGTGGCTTGGGAAGCCAAGAAACCATTGGTAATTGAAGATATTGAAGT
TCAACCACCACAAAAAGGTGAAGTCAGAATTAAAATTTTATATACTGGTGTTTGTCATAC
AGATTCATATACATTAAGTGGTAGTGATCCAGAAGGTATTTTTCCATGTATTTTAGGACA
TGAANGTGGTGGTATTGTTGAGAGTATTGGTGAAGGTGTTACAA----------
Length of 5' end seq. 284
3' end seq. ID VFC260Z
3' end seq. 
>VFC260Z.Seq
----------GATTATTCATTCGAATGTATAGGTAATGTCAATGTAATGAGAGCCGCTTT
GGAATGTTGTCATAAAGGTTNGGGTGTTTCAACCATTGTTGGTGTTGCTCCTGCTGGTGC
TGAAATTTCAACTCGTCCATTCCAATTGGTAACCGGTCGTGTTTGGAAAGGTTCTGCTTT
TGGTGGTGTAAAAAGTCGTTCTCAACTCCCATCAATCATTGATAAATATATGGATAAGAA
ATTAAAAGTTGATGAATATGTTACCCTTACATATCCATTAAATGAAATTAATACTGCATT
TGATGTTANGCATGAAGGTAAAAGNCCCCGTNCAGTTGTAAACCCCATAAAAAAAAANAA
AAAAAAAAAAA
Length of 3' end seq. 361
Connected seq. ID VFC260P
Connected seq. 
>VFC260P.Seq
AAATTTCAATTCCCAACACACACAACAAAATAAAATGAGCACAGAAGGTAAAGTTATTAC
ATGTAAAGCAGCAGTGGCTTGGGAAGCCAAGAAACCATTGGTAATTGAAGATATTGAAGT
TCAACCACCACAAAAAGGTGAAGTCAGAATTAAAATTTTATATACTGGTGTTTGTCATAC
AGATTCATATACATTAAGTGGTAGTGATCCAGAAGGTATTTTTCCATGTATTTTAGGACA
TGAANGTGGTGGTATTGTTGAGAGTATTGGTGAAGGTGTTACAA----------GATTAT
TCATTCGAATGTATAGGTAATGTCAATGTAATGAGAGCCGCTTTGGAATGTTGTCATAAA
GGTTNGGGTGTTTCAACCATTGTTGGTGTTGCTCCTGCTGGTGCTGAAATTTCAACTCGT
CCATTCCAATTGGTAACCGGTCGTGTTTGGAAAGGTTCTGCTTTTGGTGGTGTAAAAAGT
CGTTCTCAACTCCCATCAATCATTGATAAATATATGGATAAGAAATTAAAAGTTGATGAA
TATGTTACCCTTACATATCCATTAAATGAAATTAATACTGCATTTGATGTTANGCATGAA
GGTAAAAGNCCCCGTNCAGTTGTAAACCCCATAAAAAAAAANAAAAAAAAAAAAA
Length of connected seq. 645
Full length Seq ID -
Full length Seq. -
Length of full length seq. -