VFC255
Library VF
(Link to library)
Clone ID VFC255
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16272-1
Original site URL
Representative seq. ID VFC255P
(Link to Original site)
Representative DNA sequence
>VFC255 (VFC255Q) /CSM/VF/VFC2-C/VFC255Q.Seq.d/
ACTTAACTGCATTCATGGGTTACAAGAGCTGGTATGACTCACGTTGTCAGAGATTTAGGA
AAAACCAGGTTCAAAGATGCACAAAAAAGAAATCGTTGAAGCCGTCACCATCATTGAATG
TCCACCAATGTACATTGTTGGTTTAGTTGGTTATGTTGAAACCGCTCAAGGTCTCAAAAC
CTACAAAACCGTCTGGGCXXXXXXXXXXAATCGATGTTATCGGTGTAACCAAAGGTAAAG
GTTTCAATGGTGTCATTAAAAGATGGGGTGTCCGTAAATTACCAAGAAAGACCCATAAAG
GTTTAAGAAAGGTTGCCTGTATTGGTGCATGGCATCCATCCCGTGTTAGTACCACCGTCC
CAAGAGCTGGTCAACTCGGTTACCATCATCGTGTCGAAAGAAACAAGAAGATTTACAGAA
TCGGTCAAGCTCAACCAGAAGACGGTAAACAAATCTCAACCGGTAAGACTGAATTCGATT
TAACTGAAAAGACTATCAATCCAATGGGTGGTTTCGCTCACTACGGTATGGTTAAACATG
AATTCTTAATGCTTAAAGGTTGTGTTGCTGGTCCAAGAAAGAGAGCCTTAACCTTAAGAA
AGAGTATCACCACTCAAACTGGTCGTGCTGCCCTCGAGAAAATCACTCTCAAATTCATCG
ATACCTCCAGCAAGTTTGGTCACGGTCTTCATCAAACCGCTGAAGATAAGACTAAATATT
TCGGCGTCAAGAA
sequence update 2001. 6. 1
Translated Amino Acid sequence
lncihglqelv*ltlsei*EKPGSKMHKKEIVEAVTIIECPPMYIVGLVGYVETAQGLKT
YKTVW---

---IDVIGVTKGKGFNGVIKRWGVRKLPRKTHKGLRKVACIGAWHPSRVSTTVPRAGQLG
YHHRVERNKKIYRIGQAQPEDGKQISTGKTEFDLTEKTINPMGGFAHYGMVKHEFLMLKG
CVAGPRKRALTLRKSITTQTGRAALEKITLKFIDTSSKFGHGLHQTAEDKTKYFGVK


Translated Amino Acid sequence (All Frames)
Frame A:
t*lhswvtragmthvvrdlgktrfkdaqkrnr*srhhh*mstnvhcwfswlc*nrsrsqn
lqnrlg---

---nrcyrcnqr*rfqwch*kmgcp*itkkdp*rfkkgclywcmasipc*yhrpkswstr
lpsscrkkqedlqnrssstrrr*tnlnr*d*irfn*kdyqsngwfrslryg*t*ilna*r
lccwskkeslnlkkeyhhsnwsccprenhsqihrylqqvwsrsssnr*r*d*ifrrqe

Frame B:
lncihglqelv*ltlsei*EKPGSKMHKKEIVEAVTIIECPPMYIVGLVGYVETAQGLKT
YKTVW---

---IDVIGVTKGKGFNGVIKRWGVRKLPRKTHKGLRKVACIGAWHPSRVSTTVPRAGQLG
YHHRVERNKKIYRIGQAQPEDGKQISTGKTEFDLTEKTINPMGGFAHYGMVKHEFLMLKG
CVAGPRKRALTLRKSITTQTGRAALEKITLKFIDTSSKFGHGLHQTAEDKTKYFGVK

Frame C:
ltafmgykswydsrcqrfrknqvqrctkkkslkpspslnvhqctllv*lvmlkplkvskp
tkpsg---

---smlsv*pkvkvsmvslkdgvsvnyqerpikv*erlpvlvhgihpvlvppsqelvnsv
tiivsketrrftesvklnqktvnksqpvrlnsi*lkrlsiqwvvslttvwlnmns*clkv
vllvqerep*p*ervsplklvvlpsrkslsnssippaslvtvfikplkirlnisasr

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHA485 (VHA485Q) /CSM/VH/VHA4-D/VHA485Q.Seq.d/ 1041 0.0
VFO878 (VFO878Q) /CSM/VF/VFO8-D/VFO878Q.Seq.d/ 1041 0.0
VFO585 (VFO585Q) /CSM/VF/VFO5-D/VFO585Q.Seq.d/ 1041 0.0
VFN470 (VFN470Q) /CSM/VF/VFN4-C/VFN470Q.Seq.d/ 1041 0.0
VFN445 (VFN445Q) /CSM/VF/VFN4-B/VFN445Q.Seq.d/ 1041 0.0
VFN362 (VFN362Q) /CSM/VF/VFN3-C/VFN362Q.Seq.d/ 1041 0.0
VFN353 (VFN353Q) /CSM/VF/VFN3-C/VFN353Q.Seq.d/ 1041 0.0
VFN173 (VFN173Q) /CSM/VF/VFN1-D/VFN173Q.Seq.d/ 1041 0.0
VFM895 (VFM895Q) /CSM/VF/VFM8-D/VFM895Q.Seq.d/ 1041 0.0
VFM836 (VFM836Q) /CSM/VF/VFM8-B/VFM836Q.Seq.d/ 1041 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

L08391|L08391.1 Dictyostelium discoideum ribosomal protein (L3) gene, complete cds. 698 0.0 5
AX489150|AX489150.1 Sequence 6450 from Patent WO02053728. 78 4e-24 5
CB890778|CB890778.1 taa53h06.x1 Hydra EST -III Hydra magnipapillata cDNA 3' similar to SW:RL3_DROME O16797 60S RIBOSOMAL PROTEIN L3. [1] ;, mRNA sequence. 60 7e-19 3
CB889634|CB889634.1 taa39c02.x3 Hydra EST -III Hydra magnipapillata cDNA 3' similar to SW:RL3_MOUSE P27659 60S RIBOSOMAL PROTEIN L3 ;, mRNA sequence. 60 1e-18 3
CD566466|CD566466.1 tac05h02.x1 Hydra EST -III Hydra magnipapillata cDNA 3' similar to SW:RL3_DROME O16797 60S RIBOSOMAL PROTEIN L3. [1] ;, mRNA sequence. 60 1e-18 3
CB888312|CB888312.1 taa90e07.x1 Hydra EST -III Hydra magnipapillata cDNA 3' similar to SW:RL3_DROME O16797 60S RIBOSOMAL PROTEIN L3. [1] ;, mRNA sequence. 60 1e-18 3
CB888732|CB888732.1 taa80g11.x1 Hydra EST -III Hydra magnipapillata cDNA 3' similar to SW:RL3_DROME O16797 60S RIBOSOMAL PROTEIN L3. [1] ;, mRNA sequence. 60 1e-18 3
CB890866|CB890866.1 taa55b04.x1 Hydra EST -III Hydra magnipapillata cDNA 3' similar to SW:RL3_DROME O16797 60S RIBOSOMAL PROTEIN L3. [1] ;, mRNA sequence. 60 1e-18 3
CB935863|CB935863.1 tab97d07.x1 Hydra EST -III Hydra magnipapillata cDNA 3' similar to SW:RL3_DROME O16797 60S RIBOSOMAL PROTEIN L3. [1] ;, mRNA sequence. 60 1e-18 3
CB889578|CB889578.1 taa38d01.x3 Hydra EST -III Hydra magnipapillata cDNA 3' similar to SW:RL3_DROME O16797 60S RIBOSOMAL PROTEIN L3. [1] ;, mRNA sequence. 60 1e-18 3
dna update 2003. 9.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P34113) RecName: Full=60S ribosomal protein L3; &JC4254(JC4254... 359 6e-98
AY395739_1(AY395739|pid:none) Nicotiana tabacum ribosomal protei... 246 5e-64
BT034517_1(BT034517|pid:none) Zea mays full-length cDNA clone ZM... 245 9e-64
BT036034_1(BT036034|pid:none) Zea mays full-length cDNA clone ZM... 245 9e-64
BT070643_1(BT070643|pid:none) Picea sitchensis clone WS02742_A15... 245 9e-64
DQ241849_1(DQ241849|pid:none) Solanum tuberosum clone 187E04 rib... 244 2e-63
EU999182_1(EU999182|pid:none) Artemia franciscana ribosomal prot... 244 2e-63
AM452874_1(AM452874|pid:none) Vitis vinifera contig VV78X187512.... 244 2e-63
AM471157_1(AM471157|pid:none) Vitis vinifera contig VV78X211407.... 243 3e-63
BC158279_1(BC158279|pid:none) Xenopus tropicalis hypothetical pr... 243 3e-63
protein update 2009. 6.17
PSORT

psg: 0.85 gvh: 0.58 alm: 0.36 top: 0.37 tms: 0.00 mit: 0.14 mip: 0.00
nuc: 0.09 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: cytoplasmic
32.0 %: nuclear
4.0 %: Golgi
4.0 %: mitochondrial

>> prediction for VFC255 is cyt

5' end seq. ID VFC255F
5' end seq.
>VFC255F.Seq
ACTTAACTGCATTCATGGGTTACAAGAGCTGGTATGACTCACGTTGTCAGAGATTTAGGA
AAAACCAGGTTCAAAGATGCACAAAAAAGAAATCGTTGAAGCCGTCACCATCATTGAATG
TCCACCAATGTACATTGTTGGTTTAGTTGGTTATGTTGAAACCGCTCAAGGTCTCAAAAC
CTACAAAACCGTCTGGGC----------
Length of 5' end seq. 198
3' end seq. ID VFC255Z
3' end seq.
>VFC255Z.Seq
----------AATCGATGTTATCGGTGTAACCAAAGGTAAAGGTTTCAATGGTGTCATTA
AAAGATGGGGTGTCCGTAAATTACCAAGAAAGACCCATAAAGGTTTAAGAAAGGTTGCCT
GTATTGGTGCATGGCATCCATCCCGTGTTAGTACCACCGTCCCAAGAGCTGGTCAACTCG
GTTACCATCATCGTGTCGAAAGAAACAAGAAGATTTACAGAATCGGTCAAGCTCAACCAG
AAGACGGTAAACAAATCTCAACCGGTAAGACTGAATTCGATTTAACTGAAAAGACTATCA
ATCCAATGGGTGGTTTCGCTCACTACGGTATGGTTAAACATGAATTCTTAATGCTTAAAG
GTTGTGTTGCTGGTCCAAGAAAGAGAGCCTTAACCTTAAGAAAGAGTATCACCACTCAAA
CTGGTCGTGCTGCCCTCGAGAAAATCACTCTCAAATTCATCGATACCTCCAGCAAGTTTG
GTCACGGTCTTCATCAAACCGCTGAAGATAAGACTAAATATTTCGGCGTCAAGAA
Length of 3' end seq. 525
Connected seq. ID VFC255P
Connected seq.
>VFC255P.Seq
ACTTAACTGCATTCATGGGTTACAAGAGCTGGTATGACTCACGTTGTCAGAGATTTAGGA
AAAACCAGGTTCAAAGATGCACAAAAAAGAAATCGTTGAAGCCGTCACCATCATTGAATG
TCCACCAATGTACATTGTTGGTTTAGTTGGTTATGTTGAAACCGCTCAAGGTCTCAAAAC
CTACAAAACCGTCTGGGC----------AATCGATGTTATCGGTGTAACCAAAGGTAAAG
GTTTCAATGGTGTCATTAAAAGATGGGGTGTCCGTAAATTACCAAGAAAGACCCATAAAG
GTTTAAGAAAGGTTGCCTGTATTGGTGCATGGCATCCATCCCGTGTTAGTACCACCGTCC
CAAGAGCTGGTCAACTCGGTTACCATCATCGTGTCGAAAGAAACAAGAAGATTTACAGAA
TCGGTCAAGCTCAACCAGAAGACGGTAAACAAATCTCAACCGGTAAGACTGAATTCGATT
TAACTGAAAAGACTATCAATCCAATGGGTGGTTTCGCTCACTACGGTATGGTTAAACATG
AATTCTTAATGCTTAAAGGTTGTGTTGCTGGTCCAAGAAAGAGAGCCTTAACCTTAAGAA
AGAGTATCACCACTCAAACTGGTCGTGCTGCCCTCGAGAAAATCACTCTCAAATTCATCG
ATACCTCCAGCAAGTTTGGTCACGGTCTTCATCAAACCGCTGAAGATAAGACTAAATATT
TCGGCGTCAAGAA
Length of connected seq. 723
Full length Seq ID -
Full length Seq. -
Length of full length seq. -