VFC254
Library VF
(Link to library)
Clone ID VFC254
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15456-1
Original site URL
Representative seq. ID VFC254P
(Link to Original site)
Representative DNA sequence
>VFC254 (VFC254Q) /CSM/VF/VFC2-C/VFC254Q.Seq.d/
ACTGTTGGCCTACTGGNAATTGTCACCCTGNCTTACATAAAANAAAATGAAATTACTTAT
TTTAACTTTATTTTTAGCTACTATTGTTTTAGCTCANGCTTTAACAGTACCATTAAACTT
CCATCAAGCTTCAAGAGAATCTAGAAGAAGAGTTCCACAAAAATGGTCAAACAGATTATC
TGCTCTCAATGCTGGTACCACAATCCCAATTTCAGATTTTGAAGATGCTCAATACTATGG
TGCCATTACCATTGGTACCCCAGGTCAAGCCTTCAAAGTAGTTTTCGATACTGGTTCATC
CAACTTGTGGATTCCATCAAAGAAATGTCCAATCACTGTTGTTGCATGTGATTTACATAA
CAAATATAACAGCGGTGCCTCAAGCACATATGTCGCCAACGGAACTGATTTCACCATCCA
ATACGGTAGTGGTGCTATGTCAGGTTTTGTCTCTCAAGATTCCGTCACTGTTGGTTCATT
AACTGTTAAAGATCAATTATTCGCTGAAGXXXXXXXXXXAGGTGCCAACGGTGGTGAACT
CTCATTCGGTTCAATCGATAACACCAAATACACTGGTGACATTACCTACGTCCCATTAAC
CAACGAAACCTATTGGGAATTCGTTATGGATGACTTTGCTATCGATGGTCAATCAGCTGG
TTTCTGTGGTACTACTTGTCACGCAATTTGCGATTCAGGTACATCACTCATTGCTGGTCC
AATGGCTGATATTACTGCCCTCAATGAAAAATTAGGTGCTGTCATCTTAAATGGTGAAGG
TGTCTTCTCTGATTGTAGCGTTATCAACACCTTACCAAATGTTACCATCACCGTTGCTGG
TCGTGAATTTGTTTTAGCTCCAAAAGAATACGTTTTAGAAGTTACTGAGTTCGGAAAGAC
TGAATGTTTGAGTGGATTTATGGGTATCGAGTTAAACATGGGAAATTTCTGGANCCTTGG
TGATGTTTTCATACTCTGCNTACTATACTGTATTCGATTTTGGTAATAAACAAGTTGGTT
TCGCAACTGCCATNCAAGAGTTAAATTTTTTAATTAATTTATATTTAAGCATAGGAACNA
AAACTNAA
sequence update 2001. 6. 1
Translated Amino Acid sequence
llaywxlspxlt*XKMKLLILTLFLATIVLAXALTVPLNFHQASRESRRRVPQKWSNRLS
ALNAGTTIPISDFEDAQYYGAITIGTPGQAFKVVFDTGSSNLWIPSKKCPITVVACDLHN
KYNSGASSTYVANGTDFTIQYGSGAMSGFVSQDSVTVGSLTVKDQLFAE---

---GANGGELSFGSIDNTKYTGDITYVPLTNETYWEFVMDDFAIDGQSAGFCGTTCHAIC
DSGTSLIAGPMADITALNEKLGAVILNGEGVFSDCSVINTLPNVTITVAGREFVLAPKEY
VLEVTEFGKTECLSGFMGIELNMGNFWXLGDVFILCXLYCIRFW**tswfrnchxrvkff
n*fifkhrnxnx


Translated Amino Acid sequence (All Frames)
Frame A:
tvgllxivtlxyikxneityfnfifsyycfssxfnstiklpssfkri*kksstkmvkqii
csqcwyhnpnfrf*rcsilwchyhwyprsslqssfrywfiqlvdsikemsnhcccm*ft*
qi*qrclkhicrqrn*fhhpir*wcyvrfclsrfrhcwfinc*rsiir*---

---rcqrw*tlirfnr*hqihw*hylrpinqrnllgiryg*lcyrwsiswflwyylsrnl
rfryithcwsng*yycpq*kircchlkw*rcll*l*ryqhltkcyhhrcws*icfsskri
rfrsy*vrkd*mfewiygyrvkhgkflxpw*cfhtlxtilysilvinklvsqlpxks*if
*liyi*a*exkl

Frame B:
llaywxlspxlt*XKMKLLILTLFLATIVLAXALTVPLNFHQASRESRRRVPQKWSNRLS
ALNAGTTIPISDFEDAQYYGAITIGTPGQAFKVVFDTGSSNLWIPSKKCPITVVACDLHN
KYNSGASSTYVANGTDFTIQYGSGAMSGFVSQDSVTVGSLTVKDQLFAE---

---GANGGELSFGSIDNTKYTGDITYVPLTNETYWEFVMDDFAIDGQSAGFCGTTCHAIC
DSGTSLIAGPMADITALNEKLGAVILNGEGVFSDCSVINTLPNVTITVAGREFVLAPKEY
VLEVTEFGKTECLSGFMGIELNMGNFWXLGDVFILCXLYCIRFW**tswfrnchxrvkff
n*fifkhrnxnx

Frame C:
cwptgnchpxlhkxk*nylf*lyf*lllf*lxl*qyh*tsiklqenleeefhkngqtdyl
lsmlvpqsqfqilkmlntmvplplvpqvkpsk*fsilvhptcgfhqrnvqslllhviyit
nitavpqahmsptelispsntvvvlcqvlslkipsllvh*llkinyslk---

---vptvvnshsvqsitpntlvtlptsh*ptkpignslwmtllsmvnqlvsvvllvtqfa
iqvhhsllvqwlillpsmkn*vlss*mvkvsslivalstpyqmlpspllvvnlf*lqknt
f*kllsserlnv*vdlwvss*tweisgxlvmfsysayytvfdfgnkqvgfataxqelnfl
inlylsigtktx

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFC254 (VFC254Q) /CSM/VF/VFC2-C/VFC254Q.Seq.d/ 1996 0.0
SFH706 (SFH706Q) /CSM/SF/SFH7-A/SFH706Q.Seq.d/ 1033 0.0
VFH380 (VFH380Q) /CSM/VF/VFH3-D/VFH380Q.Seq.d/ 1029 0.0
VFH307 (VFH307Q) /CSM/VF/VFH3-A/VFH307Q.Seq.d/ 1029 0.0
AFN829 (AFN829Q) /CSM/AF/AFN8-B/AFN829Q.Seq.d/ 1025 0.0
VFN427 (VFN427Q) /CSM/VF/VFN4-B/VFN427Q.Seq.d/ 1023 0.0
VFN169 (VFN169Q) /CSM/VF/VFN1-C/VFN169Q.Seq.d/ 1023 0.0
VFM881 (VFM881Q) /CSM/VF/VFM8-D/VFM881Q.Seq.d/ 1023 0.0
VFM107 (VFM107Q) /CSM/VF/VFM1-A/VFM107Q.Seq.d/ 1023 0.0
VFK659 (VFK659Q) /CSM/VF/VFK6-C/VFK659Q.Seq.d/ 1023 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

Y16962|Y16962.1 Dictyostelium discoideum mRNA for cathepsin D. 910 0.0 3
AJ243946|AJ243946.1 Dictyostelium discoideum ctsD gene for cathepsin D, exons 1 to 2. 884 0.0 4
AV567523|AV567523.1 Arabidopsis thaliana cDNA clone:SQL15g03F, 3' end. 62 2e-05 1
AF372974|AF372974.1 Arabidopsis thaliana AT4g04460/T26N6_7 mRNA, complete cds. 62 2e-05 1
CB264640|CB264640.1 48-E014661-035-002-P12-T7R MPIZ-ADIS-035 Arabidopsis thaliana cDNA clone MPIZp2000P122Q 5-PRIME, mRNA sequence. 62 2e-05 1
BE525959|BE525959.1 M64C07STM Arabidopsis developing seed Arabidopsis thaliana cDNA clone 600034526R1 5', mRNA sequence. 62 2e-05 1
CD825453|CD825453.1 BN25.060N03F011129 BN25 Brassica napus cDNA clone BN25060N03, mRNA sequence. 62 2e-05 1
CB264579|CB264579.1 51-E015023-035-004-F13-T7R MPIZ-ADIS-035 Arabidopsis thaliana cDNA clone MPIZp2000F134Q 5-PRIME, mRNA sequence. 62 2e-05 1
AL765461|AL765461.1 Arabidopsis thaliana T-DNA flanking sequence GK-139E08-012875. 62 2e-05 1
AL762930|AL762930.1 Arabidopsis thaliana T-DNA flanking sequence GK-030C11-011522. 62 2e-05 1
dna update 2003. 9.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

BT080419_1(BT080419|pid:none) Caligus clemensi clone ccle-evs-50... 254 7e-68
FJ168036_1(FJ168036|pid:none) Fasciola hepatica cathepsin D-like... 244 2e-66
AF420068_1(AF420068|pid:none) Clonorchis sinensis aspartic prote... 244 2e-66
DQ909010_1(DQ909010|pid:none) Clonorchis sinensis aspartic prote... 243 4e-66
EF070454_1(EF070454|pid:none) Maconellicoccus hirsutus clone WHM... 243 2e-65
DQ010007_1(DQ010007|pid:none) Bombyx mori CathD mRNA, complete c... 243 3e-65
EF213114_1(EF213114|pid:none) Penaeus monodon cathepsin D mRNA, ... 244 1e-64
AB106552_1(AB106552|pid:none) Todarodes pacificus tpaD mRNA for ... 238 3e-64
EF000001_1(EF000001|pid:none) Fasciola hepatica cathepsin D-like... 237 5e-64
FJ655904_1(FJ655904|pid:none) Rhipicephalus microplus aspartic p... 235 1e-62
protein update 2009. 6.17
PSORT

psg: 0.98 gvh: 0.73 alm: 0.38 top: 0.63 tms: 0.00 mit: 0.32 mip: 0.08
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

28.0 %: extracellular, including cell wall
24.0 %: mitochondrial
20.0 %: nuclear
16.0 %: cytoplasmic
8.0 %: vacuolar
4.0 %: cytoskeletal

>> prediction for VFC254 is exc

5' end seq. ID VFC254F
5' end seq.
>VFC254F.Seq
ACTGTTGGCCTACTGGNAATTGTCACCCTGNCTTACATAAAANAAAATGAAATTACTTAT
TTTAACTTTATTTTTAGCTACTATTGTTTTAGCTCANGCTTTAACAGTACCATTAAACTT
CCATCAAGCTTCAAGAGAATCTAGAAGAAGAGTTCCACAAAAATGGTCAAACAGATTATC
TGCTCTCAATGCTGGTACCACAATCCCAATTTCAGATTTTGAAGATGCTCAATACTATGG
TGCCATTACCATTGGTACCCCAGGTCAAGCCTTCAAAGTAGTTTTCGATACTGGTTCATC
CAACTTGTGGATTCCATCAAAGAAATGTCCAATCACTGTTGTTGCATGTGATTTACATAA
CAAATATAACAGCGGTGCCTCAAGCACATATGTCGCCAACGGAACTGATTTCACCATCCA
ATACGGTAGTGGTGCTATGTCAGGTTTTGTCTCTCAAGATTCCGTCACTGTTGGTTCATT
AACTGTTAAAGATCAATTATTCGCTGAAG----------
Length of 5' end seq. 509
3' end seq. ID VFC254Z
3' end seq.
>VFC254Z.Seq
----------AGGTGCCAACGGTGGTGAACTCTCATTCGGTTCAATCGATAACACCAAAT
ACACTGGTGACATTACCTACGTCCCATTAACCAACGAAACCTATTGGGAATTCGTTATGG
ATGACTTTGCTATCGATGGTCAATCAGCTGGTTTCTGTGGTACTACTTGTCACGCAATTT
GCGATTCAGGTACATCACTCATTGCTGGTCCAATGGCTGATATTACTGCCCTCAATGAAA
AATTAGGTGCTGTCATCTTAAATGGTGAAGGTGTCTTCTCTGATTGTAGCGTTATCAACA
CCTTACCAAATGTTACCATCACCGTTGCTGGTCGTGAATTTGTTTTAGCTCCAAAAGAAT
ACGTTTTAGAAGTTACTGAGTTCGGAAAGACTGAATGTTTGAGTGGATTTATGGGTATCG
AGTTAAACATGGGAAATTTCTGGANCCTTGGTGATGTTTTCATACTCTGCNTACTATACT
GTATTCGATTTTGGTAATAAACAAGTTGGTTTCGCAACTGCCATNCAAGAGTTAAATTTT
TTAATTAATTTATATTTAAGCATAGGAACNAAAACTNAA
Length of 3' end seq. 569
Connected seq. ID VFC254P
Connected seq.
>VFC254P.Seq
ACTGTTGGCCTACTGGNAATTGTCACCCTGNCTTACATAAAANAAAATGAAATTACTTAT
TTTAACTTTATTTTTAGCTACTATTGTTTTAGCTCANGCTTTAACAGTACCATTAAACTT
CCATCAAGCTTCAAGAGAATCTAGAAGAAGAGTTCCACAAAAATGGTCAAACAGATTATC
TGCTCTCAATGCTGGTACCACAATCCCAATTTCAGATTTTGAAGATGCTCAATACTATGG
TGCCATTACCATTGGTACCCCAGGTCAAGCCTTCAAAGTAGTTTTCGATACTGGTTCATC
CAACTTGTGGATTCCATCAAAGAAATGTCCAATCACTGTTGTTGCATGTGATTTACATAA
CAAATATAACAGCGGTGCCTCAAGCACATATGTCGCCAACGGAACTGATTTCACCATCCA
ATACGGTAGTGGTGCTATGTCAGGTTTTGTCTCTCAAGATTCCGTCACTGTTGGTTCATT
AACTGTTAAAGATCAATTATTCGCTGAAG----------AGGTGCCAACGGTGGTGAACT
CTCATTCGGTTCAATCGATAACACCAAATACACTGGTGACATTACCTACGTCCCATTAAC
CAACGAAACCTATTGGGAATTCGTTATGGATGACTTTGCTATCGATGGTCAATCAGCTGG
TTTCTGTGGTACTACTTGTCACGCAATTTGCGATTCAGGTACATCACTCATTGCTGGTCC
AATGGCTGATATTACTGCCCTCAATGAAAAATTAGGTGCTGTCATCTTAAATGGTGAAGG
TGTCTTCTCTGATTGTAGCGTTATCAACACCTTACCAAATGTTACCATCACCGTTGCTGG
TCGTGAATTTGTTTTAGCTCCAAAAGAATACGTTTTAGAAGTTACTGAGTTCGGAAAGAC
TGAATGTTTGAGTGGATTTATGGGTATCGAGTTAAACATGGGAAATTTCTGGANCCTTGG
TGATGTTTTCATACTCTGCNTACTATACTGTATTCGATTTTGGTAATAAACAAGTTGGTT
TCGCAACTGCCATNCAAGAGTTAAATTTTTTAATTAATTTATATTTAAGCATAGGAACNA
AAACTNAA
Length of connected seq. 1078
Full length Seq ID -
Full length Seq. -
Length of full length seq. -