VFC249
Library VF
(Link to library)
Clone ID VFC249
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16272-1
Original site URL
Representative seq. ID VFC249P
(Link to Original site)
Representative DNA sequence
>VFC249 (VFC249Q) /CSM/VF/VFC2-C/VFC249Q.Seq.d/
ACTGTTGGCCTACTGGGTTAGTCACTTCTAAACAACAATAACAATATGAGTCATCGTAAA
TTTGAAGCTCCACGTCACGGTAATCTCGGTTTCAGACCAAGNAAAGAGAGCCGCCAGACA
TCAAGGTAAAGTCAAGTCATTCCCAAAGGATGACCGTACCCAAAAAGTCCACTTAACTGC
ATTCATGGGTTACAAAGCTGGTATGACTCACGTTGTCAGAGATTTAGAAAAACCAGGTTC
AAAGATGCACAAAAAAGAAATCGTTGAAGCCGTCACCATCATTGAATGTCCACCAATGTA
CATTGTTGGTTTAGTTGGTTATGTTGAAACCGCTCAAGGTCTCAAAACCTACAAAACCGT
CTGGGCTCAACATTTAAGTGATAACTTCCGTAGAAGATTATACAAAAACTGGTACAAATC
AAAATCAAAGAAAGCTTTCACCAAATACGTTAAACAATACGAAACTGAAGAAGGTAAAAA
ATCAATTGAAGCCTCTCTCCXXXXXXXXXXTGCTGTTGCCAACTTTGAAAAGACCGTCAA
CGTCACTGGTGTCTTTGCCGAAAATGAATTAATCGATGTTATCGGTGTAACCAAAGGTAA
AGGTTTCAATGGTGTCATTAAAAGATGGGGTGTCCGTAAATTACCAAGAAAGACCCATAA
AGGTTTAAGAAAGGTTGCCTGTATTGGTGCATGGCATCCATCCCGTGTTAGTACCACCGT
CCCAAGAGCTGGTCAACTCGGTTACCATCATCGTGTCGAAAGAAACAAGAAGATTTACAG
AATCGGTCAAGCTCAACCAGAAGACGGTAAACAAATCTCAACCGGTAAGACTGAATTCGA
TTTAACTGAAAAGACTATCAATCCAATGGGTGGTTTCGCTCACTACGGTATGGTTAAACA
TGAATTCTTAATGCTTAAAGGTTGTGTTGCTGGTCCAAGAAAGAGAGCCTTAACCTTAAG
AAAGAGTATCACCACTCAAACTGGTCGTGCTGCCCTCGAGAAAATCACTCTCAAATTCAT
CGATACCTCCAGCAAGTTTGGTCACGGTCTTCATCAAACCGCTGAAGATAAGACTAAATA
TTCGGCGTCAAGAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence
llaywvshf*ttiti*VIVNLKLHVTVISVSDQXKRAARHQGKVKSFPKDDRTQKVHLTA
FMGYKAGMTHVVRDLEKPGSKMHKKEIVEAVTIIECPPMYIVGLVGYVETAQGLKTYKTV
WAQHLSDNFRRRLYKNWYKSKSKKAFTKYVKQYETEEGKKSIEASL---

---AVANFEKTVNVTGVFAENELIDVIGVTKGKGFNGVIKRWGVRKLPRKTHKGLRKVAC
IGAWHPSRVSTTVPRAGQLGYHHRVERNKKIYRIGQAQPEDGKQISTGKTEFDLTEKTIN
PMGGFAHYGMVKHEFLMLKGCVAGPRKRALTLRKSITTQTGRAALEKITLKFIDTSSKFG
HGLHQTAEDKTKYSASR


Translated Amino Acid sequence (All Frames)
Frame A:
tvgllg*sllnnnnnmshrkfeaprhgnlgfrpxkesrqtsr*sqvipkg*pypksplnc
ihglqswydsrcqrfrktrfkdaqkrnr*srhhh*mstnvhcwfswlc*nrsrsqnlqnr
lgstfk**lp*kiiqklvqikikesfhqir*tirn*rr*kin*sls---

---cccql*kdrqrhwclcrk*inrcyrcnqr*rfqwch*kmgcp*itkkdp*rfkkgcl
ywcmasipc*yhrpkswstrlpsscrkkqedlqnrssstrrr*tnlnr*d*irfn*kdyq
sngwfrslryg*t*ilna*rlccwskkeslnlkkeyhhsnwsccprenhsqihrylqqvw
srsssnr*r*d*ifgvkk

Frame B:
llaywvshf*ttiti*VIVNLKLHVTVISVSDQXKRAARHQGKVKSFPKDDRTQKVHLTA
FMGYKAGMTHVVRDLEKPGSKMHKKEIVEAVTIIECPPMYIVGLVGYVETAQGLKTYKTV
WAQHLSDNFRRRLYKNWYKSKSKKAFTKYVKQYETEEGKKSIEASL---

---AVANFEKTVNVTGVFAENELIDVIGVTKGKGFNGVIKRWGVRKLPRKTHKGLRKVAC
IGAWHPSRVSTTVPRAGQLGYHHRVERNKKIYRIGQAQPEDGKQISTGKTEFDLTEKTIN
PMGGFAHYGMVKHEFLMLKGCVAGPRKRALTLRKSITTQTGRAALEKITLKFIDTSSKFG
HGLHQTAEDKTKYSASR

Frame C:
cwptglvtskqq*qyess*i*sstsr*srfqtkxreppdikvksshsqrmtvpkkst*lh
swvtklv*ltlsei*knqvqrctkkkslkpspslnvhqctllv*lvmlkplkvskptkps
glni*vitsvedytktgtnqnqrklspntlnntklkkvknqlkpls---

---llptlkrpstslvslpkmn*smlsv*pkvkvsmvslkdgvsvnyqerpikv*erlpv
lvhgihpvlvppsqelvnsvtiivsketrrftesvklnqktvnksqpvrlnsi*lkrlsi
qwvvslttvwlnmns*clkvvllvqerep*p*ervsplklvvlpsrkslsnssippaslv
tvfikplkirlnirrqe

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFC249 (VFC249Q) /CSM/VF/VFC2-C/VFC249Q.Seq.d/ 2105 0.0
VHA485 (VHA485Q) /CSM/VH/VHA4-D/VHA485Q.Seq.d/ 1146 0.0
VFO878 (VFO878Q) /CSM/VF/VFO8-D/VFO878Q.Seq.d/ 1146 0.0
VFO585 (VFO585Q) /CSM/VF/VFO5-D/VFO585Q.Seq.d/ 1146 0.0
VFN470 (VFN470Q) /CSM/VF/VFN4-C/VFN470Q.Seq.d/ 1146 0.0
VFN445 (VFN445Q) /CSM/VF/VFN4-B/VFN445Q.Seq.d/ 1146 0.0
VFN362 (VFN362Q) /CSM/VF/VFN3-C/VFN362Q.Seq.d/ 1146 0.0
VFN353 (VFN353Q) /CSM/VF/VFN3-C/VFN353Q.Seq.d/ 1146 0.0
VFN173 (VFN173Q) /CSM/VF/VFN1-D/VFN173Q.Seq.d/ 1146 0.0
VFM895 (VFM895Q) /CSM/VF/VFM8-D/VFM895Q.Seq.d/ 1146 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

L08391|L08391.1 Dictyostelium discoideum ribosomal protein (L3) gene, complete cds. 817 0.0 6
AX489150|AX489150.1 Sequence 6450 from Patent WO02053728. 78 2e-39 8
Z74971|Z74971.1 S.cerevisiae chromosome XV reading frame ORF YOR063w. 70 1e-32 8
J01351|J01351.1 S.cerevisiae ribosomal protein L3 (tcm1) gene. 62 6e-32 8
Z70678|Z70678.1 S.cerevisiae chromosome XV DNA, 54.7 kb region. 70 1e-24 9
AL424946|AL424946.1 clone BA0AB002D01 of library BA0AB from strain CLIB 210 of Kluyveromyces lactis. 66 2e-19 5
AX765804|AX765804.1 Sequence 13 from Patent WO03008440. 74 2e-19 4
AY052743|AY052743.1 Arabidopsis thaliana At1g43170/F1I21_18 mRNA, complete cds. 74 2e-19 4
AF361101|AF361101.1 Arabidopsis thaliana putative L3 cytoplasmic ribosomal protein (F1I21.L3) mRNA, complete cds. 74 2e-19 4
AY057487|AY057487.1 Arabidopsis thaliana At1g43170/F1I21_18 mRNA, complete cds. 74 3e-19 4
dna update 2003. 9.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P34113) RecName: Full=60S ribosomal protein L3; &JC4254(JC4254... 634 e-180
BC158279_1(BC158279|pid:none) Xenopus tropicalis hypothetical pr... 422 e-122
BT070919_1(BT070919|pid:none) Picea sitchensis clone WS02759_D23... 418 e-121
BT034517_1(BT034517|pid:none) Zea mays full-length cDNA clone ZM... 419 e-121
BT036034_1(BT036034|pid:none) Zea mays full-length cDNA clone ZM... 418 e-120
AY343328_1(AY343328|pid:none) Triticum aestivum ribosomal protei... 417 e-120
(P39872) RecName: Full=60S ribosomal protein L3; &BC102253_1(BC... 413 e-119
AK151142_1(AK151142|pid:none) Mus musculus bone marrow macrophag... 413 e-119
AK151057_1(AK151057|pid:none) Mus musculus bone marrow macrophag... 413 e-119
(P35684) RecName: Full=60S ribosomal protein L3; &AK060925_1(AK... 413 e-119
protein update 2009. 6.17
PSORT

psg: 0.88 gvh: 0.46 alm: 0.36 top: 0.50 tms: 0.00 mit: 0.27 mip: 0.05
nuc: 0.09 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.50 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

88.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: nuclear

>> prediction for VFC249 is cyt

5' end seq. ID VFC249F
5' end seq.
>VFC249F.Seq
ACTGTTGGCCTACTGGGTTAGTCACTTCTAAACAACAATAACAATATGAGTCATCGTAAA
TTTGAAGCTCCACGTCACGGTAATCTCGGTTTCAGACCAAGNAAAGAGAGCCGCCAGACA
TCAAGGTAAAGTCAAGTCATTCCCAAAGGATGACCGTACCCAAAAAGTCCACTTAACTGC
ATTCATGGGTTACAAAGCTGGTATGACTCACGTTGTCAGAGATTTAGAAAAACCAGGTTC
AAAGATGCACAAAAAAGAAATCGTTGAAGCCGTCACCATCATTGAATGTCCACCAATGTA
CATTGTTGGTTTAGTTGGTTATGTTGAAACCGCTCAAGGTCTCAAAACCTACAAAACCGT
CTGGGCTCAACATTTAAGTGATAACTTCCGTAGAAGATTATACAAAAACTGGTACAAATC
AAAATCAAAGAAAGCTTTCACCAAATACGTTAAACAATACGAAACTGAAGAAGGTAAAAA
ATCAATTGAAGCCTCTCTCC----------
Length of 5' end seq. 500
3' end seq. ID VFC249Z
3' end seq.
>VFC249Z.Seq
----------TGCTGTTGCCAACTTTGAAAAGACCGTCAACGTCACTGGTGTCTTTGCCG
AAAATGAATTAATCGATGTTATCGGTGTAACCAAAGGTAAAGGTTTCAATGGTGTCATTA
AAAGATGGGGTGTCCGTAAATTACCAAGAAAGACCCATAAAGGTTTAAGAAAGGTTGCCT
GTATTGGTGCATGGCATCCATCCCGTGTTAGTACCACCGTCCCAAGAGCTGGTCAACTCG
GTTACCATCATCGTGTCGAAAGAAACAAGAAGATTTACAGAATCGGTCAAGCTCAACCAG
AAGACGGTAAACAAATCTCAACCGGTAAGACTGAATTCGATTTAACTGAAAAGACTATCA
ATCCAATGGGTGGTTTCGCTCACTACGGTATGGTTAAACATGAATTCTTAATGCTTAAAG
GTTGTGTTGCTGGTCCAAGAAAGAGAGCCTTAACCTTAAGAAAGAGTATCACCACTCAAA
CTGGTCGTGCTGCCCTCGAGAAAATCACTCTCAAATTCATCGATACCTCCAGCAAGTTTG
GTCACGGTCTTCATCAAACCGCTGAAGATAAGACTAAATATTCGGCGTCAAGAAA
Length of 3' end seq. 585
Connected seq. ID VFC249P
Connected seq.
>VFC249P.Seq
ACTGTTGGCCTACTGGGTTAGTCACTTCTAAACAACAATAACAATATGAGTCATCGTAAA
TTTGAAGCTCCACGTCACGGTAATCTCGGTTTCAGACCAAGNAAAGAGAGCCGCCAGACA
TCAAGGTAAAGTCAAGTCATTCCCAAAGGATGACCGTACCCAAAAAGTCCACTTAACTGC
ATTCATGGGTTACAAAGCTGGTATGACTCACGTTGTCAGAGATTTAGAAAAACCAGGTTC
AAAGATGCACAAAAAAGAAATCGTTGAAGCCGTCACCATCATTGAATGTCCACCAATGTA
CATTGTTGGTTTAGTTGGTTATGTTGAAACCGCTCAAGGTCTCAAAACCTACAAAACCGT
CTGGGCTCAACATTTAAGTGATAACTTCCGTAGAAGATTATACAAAAACTGGTACAAATC
AAAATCAAAGAAAGCTTTCACCAAATACGTTAAACAATACGAAACTGAAGAAGGTAAAAA
ATCAATTGAAGCCTCTCTCC----------TGCTGTTGCCAACTTTGAAAAGACCGTCAA
CGTCACTGGTGTCTTTGCCGAAAATGAATTAATCGATGTTATCGGTGTAACCAAAGGTAA
AGGTTTCAATGGTGTCATTAAAAGATGGGGTGTCCGTAAATTACCAAGAAAGACCCATAA
AGGTTTAAGAAAGGTTGCCTGTATTGGTGCATGGCATCCATCCCGTGTTAGTACCACCGT
CCCAAGAGCTGGTCAACTCGGTTACCATCATCGTGTCGAAAGAAACAAGAAGATTTACAG
AATCGGTCAAGCTCAACCAGAAGACGGTAAACAAATCTCAACCGGTAAGACTGAATTCGA
TTTAACTGAAAAGACTATCAATCCAATGGGTGGTTTCGCTCACTACGGTATGGTTAAACA
TGAATTCTTAATGCTTAAAGGTTGTGTTGCTGGTCCAAGAAAGAGAGCCTTAACCTTAAG
AAAGAGTATCACCACTCAAACTGGTCGTGCTGCCCTCGAGAAAATCACTCTCAAATTCAT
CGATACCTCCAGCAAGTTTGGTCACGGTCTTCATCAAACCGCTGAAGATAAGACTAAATA
TTCGGCGTCAAGAAA
Length of connected seq. 1085
Full length Seq ID -
Full length Seq. -
Length of full length seq. -