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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFC245
Library VF
(Link to library)
Clone ID VFC245
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16269-1
Original site URL
Representative seq. ID VFC245P
(Link to Original site)
Representative DNA sequence 
>VFC245 (VFC245Q) /CSM/VF/VFC2-B/VFC245Q.Seq.d/
GTTGGCCTACTGGNAATCATCACACATAAAAAATGACTACTCGTCCATTTGTCCAAGTCT
TTGATGCCCAAAACAAAGTTGTAGGTAAAGTTAAGCTCCCAAATGTCTTGACCACCCCAA
TCCGTCCAGATTTAGTTAACTTTGTCCACACCAACTTAAACAAGAATGCTCGTCAAGCTT
ATGGTGCTGCTCCATACGCTGGTGAACAAACCTCTGCTGAATCATGGGGTACTGGTCGTG
CTGTCGCTCGTATTCCTCGTGTTCCAGGTTCAGGTACACACCGTTCAGGTCAAGGTGCCT
TCGGTAACATGTGTAGAGGTGGTCGTATGTATGGTCCAAACAAGACCTGGAGACGTTGGA
ATCGTAAAGTTAACGTCAACCAAAAGAGATACGCTGTTGTCTCAGCTTTAGCTGCCTCAG
CTGTCCCAGCCCTCGTTATGGCTCGTGGTCACAGAATCAATGGTATCAATGAAGTCCCAT
XXXXXXXXXXGCTGGTAAAGCAAGAAACAGACGTTACAAAGTCCGTAAAGGTCCATTAGT
CGTCGTCTCTGGTAAGACTACCGTCTCCCAAGCCTTACGTAACATCCCAGGTGTTGAAGT
TGCCAACGTCTCAAGACTCAACTTATTAAAATTAGCACCAGGTGGTCACTTAGGTAGATT
CATCATCTGGACTAAATCCGCTTTCGAACAATTAGACTCAACCTTTGGTACCTTTGCCAA
ATCATCTGCTCAAAAGAAAGGTTACACTCTCCCACGTCCAATGATTGCTAACGCTGATAT
TGTCAGACTCGTCAACTCTGATGAAATCCAAGCTGCCGTTAGAGCCAGCAAAGTCGTCGT
CAAACGTCCAACTGCCCCAGTTCGTCGTTCTAACCCATTAAAGAACTTACGTGCTATGAT
TAAATTAAACCCAGCCGCCGTCTCAACCCGTCGTACTCAAGTTAAATCATTAAAATCAAA
AGGTANCAAAGTTAGCAAAAAGAATCAATTAAGAGCTAAATTAGTTGCTGCCACTTCAAC
sequence update 2001. 6. 1
Translated Amino Acid sequence 
wptgnhht*KMTTRPFVQVFDAQNKVVGKVKLPNVLTTPIRPDLVNFVHTNLNKNARQAY
GAAPYAGEQTSAESWGTGRAVARIPRVPGSGTHRSGQGAFGNMCRGGRMYGPNKTWRRWN
RKVNVNQKRYAVVSALAASAVPALVMARGHRINGINEVP---

---AGKARNRRYKVRKGPLVVVSGKTTVSQALRNIPGVEVANVSRLNLLKLAPGGHLGRF
IIWTKSAFEQLDSTFGTFAKSSAQKKGYTLPRPMIANADIVRLVNSDEIQAAVRASKVVV
KRPTAPVRRSNPLKNLRAMIKLNPAAVSTRRTQVKSLKSKGXKVSKKNQLRAKLVAATS
Translated Amino Acid sequence (All Frames) 
Frame A:
vgllxiithkk*llvhlskslmpktkl*vklssqms*ppqsvqi*ltlstpt*trmlvkl
mvllhtlvnkpllnhgvlvvlslvflvfqvqvhtvqvkvpsvtcvevvvcmvqtrpgdvg
ivkltstkrdtllsql*lpqlsqpslwlvvtesmvsmksh---

---AGKARNRRYKVRKGPLVVVSGKTTVSQALRNIPGVEVANVSRLNLLKLAPGGHLGRF
IIWTKSAFEQLDSTFGTFAKSSAQKKGYTLPRPMIANADIVRLVNSDEIQAAVRASKVVV
KRPTAPVRRSNPLKNLRAMIKLNPAAVSTRRTQVKSLKSKGXKVSKKNQLRAKLVAATS

Frame B:
laywxsshikndyssicpsl*cpkqscr*s*apkcldhpnpsrfs*lcphqlkqecsssl
wccsirw*tnlc*imgywsccrsysscsrfrytpfrsrclr*hv*rwsyvwskqdletle
s*s*rqpkeircclsfsclscpsprygswsqnqwyq*sp---

---lvkqetdvtksvkvh*ssslvrlpspkpyvtsqvlklptsqdsty*n*hqvvt*vds
ssglnplsnn*tqplvplpnhllkrkvtlshvq*lltlilsdsstlmksklplepaksss
nvqlpqfvvlth*rtyvl*ln*tqppsqpvvlklnh*nqkvxklakrin*eln*llplq

Frame C:
wptgnhht*KMTTRPFVQVFDAQNKVVGKVKLPNVLTTPIRPDLVNFVHTNLNKNARQAY
GAAPYAGEQTSAESWGTGRAVARIPRVPGSGTHRSGQGAFGNMCRGGRMYGPNKTWRRWN
RKVNVNQKRYAVVSALAASAVPALVMARGHRINGINEVP---

---w*skkqtlqsp*rsisrrlw*dyrlpslt*hprc*scqrlktqlikistrwslr*ih
hld*irfrtirlnlwylcqiicskerlhsptsndc*r*ycqtrql**npscr*sqqsrrq
tsncpsssf*pikeltcyd*ikpsrrlnpsyss*iikikrxqs*qkesiks*iscchfn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFC245 (VFC245Q) /CSM/VF/VFC2-B/VFC245Q.Seq.d/                       1951   0.0
VFM539 (VFM539Q) /CSM/VF/VFM5-B/VFM539Q.Seq.d/                       1045   0.0
VFJ369 (VFJ369Q) /CSM/VF/VFJ3-C/VFJ369Q.Seq.d/                       1039   0.0
VSH231 (VSH231Q) /CSM/VS/VSH2-B/VSH231Q.Seq.d/                       1037   0.0
VSD121 (VSD121Q) /CSM/VS/VSD1-A/VSD121Q.Seq.d/                       1037   0.0
VSC413 (VSC413Q) /CSM/VS/VSC4-A/VSC413Q.Seq.d/                       1037   0.0
VHB796 (VHB796Q) /CSM/VH/VHB7-D/VHB796Q.Seq.d/                       1037   0.0
VFO418 (VFO418Q) /CSM/VF/VFO4-A/VFO418Q.Seq.d/                       1037   0.0
VFN485 (VFN485Q) /CSM/VF/VFN4-D/VFN485Q.Seq.d/                       1037   0.0
VFN478 (VFN478Q) /CSM/VF/VFN4-D/VFN478Q.Seq.d/                       1037   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115612|AC115612.2 Dictyostelium discoideum chromosome 2 map 6245135-6357017 strain AX4, complete sequence.  1029  0.0  3
AL424490|AL424490.1 T7 end of clone AZ0AA014F12 of library AZ0AA from strain CBS 712 of Kluyveromyces marxianus.    88  4e-31  5
Z35900|Z35900.1 S.cerevisiae chromosome II reading frame ORF YBR031w.    84  3e-27  3
Z74308|Z74308.1 S.cerevisiae chromosome IV reading frame ORF YDR012w.    84  8e-27  3
AQ874948|AQ874948.1 V119B5 mTn-3xHA/lacZ Insertion Library, strain Y2278 Saccharomyces cerevisiae genomic 5', genomic survey sequence.    84  8e-26  2
J03195|J03195.1 Yeast (S.cerevisiae) ribosomal protein L2 (ScrpL2A) gene, complete cds.    84  3e-25  2
X76078|X76078.1 S.cerevisiae (alphaS288C) GAL1, FUR4 and CAL1 genes.    84  1e-24  3
X95966|X95966.1 S.cerevisiae 35.4kb DNA region on left arm of chromosome IV.    84  1e-24  3
Z48008|Z48008.1 S.cerevisiae chromosome IV cosmid 8119.           84  1e-24  3
T38830|T38830.1 EST104394 S. cerevisiae strain X2180-1A Saccharomyces cerevisiae cDNA 3' end, mRNA sequence.    78  3e-24  2
dna update 2003. 9.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR940348_389(CR940348|pid:none) Theileria annulata strain Ankara...   155   8e-50
BC049520_1(BC049520|pid:none) Danio rerio ribosomal protein L4, ...   187   7e-46
EU558306_1(EU558306|pid:none) Novocrania anomala putative 60S ri...   186   9e-46
AJ720803_1(AJ720803|pid:none) Gallus gallus mRNA for hypothetica...   184   3e-45
BC041744_1(BC041744|pid:none) Xenopus laevis ribosomal protein L...   184   6e-45
DQ211981_1(DQ211981|pid:none) Toxoplasma gondii 60S ribosomal su...   184   6e-45
BC167741_1(BC167741|pid:none) Xenopus tropicalis cDNA clone MGC:...   184   6e-45
BC054956_1(BC054956|pid:none) Xenopus laevis ribosomal protein L...   184   6e-45
AY190725_1(AY190725|pid:none) Pagrus major ribosomal protein L4 ...   184   6e-45
BC043895_1(BC043895|pid:none) Xenopus laevis ribosomal protein L...   183   9e-45
protein update 2009. 6.17
PSORT 

 psg: 0.76  gvh: 0.36  alm: 0.27  top: 0.30  tms: 0.07  mit: 0.38  mip: 0.09
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.50  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: mitochondrial
	 20.0 %: cytoplasmic
	 16.0 %: Golgi
	 16.0 %: nuclear
	 12.0 %: endoplasmic reticulum

>> prediction for VFC245 is mit
5' end seq. ID VFC245F
5' end seq. 
>VFC245F.Seq
GTTGGCCTACTGGNAATCATCACACATAAAAAATGACTACTCGTCCATTTGTCCAAGTCT
TTGATGCCCAAAACAAAGTTGTAGGTAAAGTTAAGCTCCCAAATGTCTTGACCACCCCAA
TCCGTCCAGATTTAGTTAACTTTGTCCACACCAACTTAAACAAGAATGCTCGTCAAGCTT
ATGGTGCTGCTCCATACGCTGGTGAACAAACCTCTGCTGAATCATGGGGTACTGGTCGTG
CTGTCGCTCGTATTCCTCGTGTTCCAGGTTCAGGTACACACCGTTCAGGTCAAGGTGCCT
TCGGTAACATGTGTAGAGGTGGTCGTATGTATGGTCCAAACAAGACCTGGAGACGTTGGA
ATCGTAAAGTTAACGTCAACCAAAAGAGATACGCTGTTGTCTCAGCTTTAGCTGCCTCAG
CTGTCCCAGCCCTCGTTATGGCTCGTGGTCACAGAATCAATGGTATCAATGAAGTCCCAT
----------
Length of 5' end seq. 480
3' end seq. ID VFC245Z
3' end seq. 
>VFC245Z.Seq
----------GCTGGTAAAGCAAGAAACAGACGTTACAAAGTCCGTAAAGGTCCATTAGT
CGTCGTCTCTGGTAAGACTACCGTCTCCCAAGCCTTACGTAACATCCCAGGTGTTGAAGT
TGCCAACGTCTCAAGACTCAACTTATTAAAATTAGCACCAGGTGGTCACTTAGGTAGATT
CATCATCTGGACTAAATCCGCTTTCGAACAATTAGACTCAACCTTTGGTACCTTTGCCAA
ATCATCTGCTCAAAAGAAAGGTTACACTCTCCCACGTCCAATGATTGCTAACGCTGATAT
TGTCAGACTCGTCAACTCTGATGAAATCCAAGCTGCCGTTAGAGCCAGCAAAGTCGTCGT
CAAACGTCCAACTGCCCCAGTTCGTCGTTCTAACCCATTAAAGAACTTACGTGCTATGAT
TAAATTAAACCCAGCCGCCGTCTCAACCCGTCGTACTCAAGTTAAATCATTAAAATCAAA
AGGTANCAAAGTTAGCAAAAAGAATCAATTAAGAGCTAAATTAGTTGCTGCCACTTCAAC
Length of 3' end seq. 530
Connected seq. ID VFC245P
Connected seq. 
>VFC245P.Seq
GTTGGCCTACTGGNAATCATCACACATAAAAAATGACTACTCGTCCATTTGTCCAAGTCT
TTGATGCCCAAAACAAAGTTGTAGGTAAAGTTAAGCTCCCAAATGTCTTGACCACCCCAA
TCCGTCCAGATTTAGTTAACTTTGTCCACACCAACTTAAACAAGAATGCTCGTCAAGCTT
ATGGTGCTGCTCCATACGCTGGTGAACAAACCTCTGCTGAATCATGGGGTACTGGTCGTG
CTGTCGCTCGTATTCCTCGTGTTCCAGGTTCAGGTACACACCGTTCAGGTCAAGGTGCCT
TCGGTAACATGTGTAGAGGTGGTCGTATGTATGGTCCAAACAAGACCTGGAGACGTTGGA
ATCGTAAAGTTAACGTCAACCAAAAGAGATACGCTGTTGTCTCAGCTTTAGCTGCCTCAG
CTGTCCCAGCCCTCGTTATGGCTCGTGGTCACAGAATCAATGGTATCAATGAAGTCCCAT
----------GCTGGTAAAGCAAGAAACAGACGTTACAAAGTCCGTAAAGGTCCATTAGT
CGTCGTCTCTGGTAAGACTACCGTCTCCCAAGCCTTACGTAACATCCCAGGTGTTGAAGT
TGCCAACGTCTCAAGACTCAACTTATTAAAATTAGCACCAGGTGGTCACTTAGGTAGATT
CATCATCTGGACTAAATCCGCTTTCGAACAATTAGACTCAACCTTTGGTACCTTTGCCAA
ATCATCTGCTCAAAAGAAAGGTTACACTCTCCCACGTCCAATGATTGCTAACGCTGATAT
TGTCAGACTCGTCAACTCTGATGAAATCCAAGCTGCCGTTAGAGCCAGCAAAGTCGTCGT
CAAACGTCCAACTGCCCCAGTTCGTCGTTCTAACCCATTAAAGAACTTACGTGCTATGAT
TAAATTAAACCCAGCCGCCGTCTCAACCCGTCGTACTCAAGTTAAATCATTAAAATCAAA
AGGTANCAAAGTTAGCAAAAAGAATCAATTAAGAGCTAAATTAGTTGCTGCCACTTCAAC
Length of connected seq. 1010
Full length Seq ID -
Full length Seq. -
Length of full length seq. -