VFC234
Library VF
(Link to library)
Clone ID VFC234
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16464-1
Original site URL
Representative seq. ID VFC234P
(Link to Original site)
Representative DNA sequence
>VFC234 (VFC234Q) /CSM/VF/VFC2-B/VFC234Q.Seq.d/
ACTGTTGGCCTACTGGAAAAAAATGTACTCAGAAATTATTGAAGATGAGGGGATGTATAC
ATCTCTCAAGAAAAAGGAGATAATAATAATGATGATAAAGTTAGTTTAATTAATAAAGAT
AGTATTAGAAATAGTAATGACAGTATTTCATCGTCATCATCATCGTCATCAAATGATGAT
GATCATAATGTACCAATAAATCCATCAGTAGAATTAGAATTTGAACAATATATCAATAAT
CATAGAGGCAAGAACGTTCATCGTAGAAATGTTAAAGCCGATGAACTTAGATXXXXXXXX
XXGTAGCAATGTTTTTATATTGTCGTAGATTAACTCTTTCATCTTCTTCAATGATTTTAG
CACCCGATCATAGAAATGATATCGTGGTTAATTCATTTGGTGTTGGTATGGCTATTTTAG
GTCAAAATTGGGTTTGGTGGTTAGATCCAAGTGGTGCAATCGTTGTTGCTTTAATCATTT
TACGTTCTTGGACTTCTGAAGCCTATGAACAAATTCANTTATTAGTTGGTAAATCAGCAT
CACCAGAATTCCTTCAAAANTTAACTTTTATAGCTTTAACTCATCATCCTGAAGTACTTA
AAGTTGATACTTGTAGAGCATTCCCATGTTGGTAATAATTTATATGTTGAAGTTGATATA
GTCTTACCACCATCAATGCCATTGGTTCAAACTCATGATATTGGTGAATCACTCAAGAGA
AATTAGAATCATTATCAGATGTTGATAGAGCTTTGTTNCATGTT
sequence update 2001. 6. 1
Translated Amino Acid sequence
tvglleknvlrny*r*GDVYISQEKGDNNNDDKVSLINKDSIRNSNDSISSSSSSSSNDD
DHNVPINPSVELEFEQYINNHRGKNVHRRNVKADELR---

---VAMFLYCRRLTLSSSSMILAPDHRNDIVVNSFGVGMAILGQNWVWWLDPSGAIVVAL
IILRSWTSEAYEQIXLLVGKSASPEFLQXLTFIALTHHPEVLKVDTCRAFPCW**fic*s
*yslttinaigsns*yw*itqekleslsdvdralxhv


Translated Amino Acid sequence (All Frames)
Frame A:
tvglleknvlrny*r*GDVYISQEKGDNNNDDKVSLINKDSIRNSNDSISSSSSSSSNDD
DHNVPINPSVELEFEQYINNHRGKNVHRRNVKADELR---

---VAMFLYCRRLTLSSSSMILAPDHRNDIVVNSFGVGMAILGQNWVWWLDPSGAIVVAL
IILRSWTSEAYEQIXLLVGKSASPEFLQXLTFIALTHHPEVLKVDTCRAFPCW**fic*s
*yslttinaigsns*yw*itqekleslsdvdralxhv

Frame B:
llaywkkmyseiiedegmytslkkkeiiimmiklv*likivleivmtvfhrhhhrhqmmm
iimyq*ihq*n*nlnnisiiieartfivemlkpmnld---

---*qcfyivvd*lfhllq*f*hpiiemiswlihlvlvwlf*vkigfgg*iqvvqslll*
sfyvlgllkpmnkfxy*lvnqhhqnsfkx*ll*l*liilkylklilvehshvgnnlyvev
divlppsmplvqthdigeslkrn*nhyqmlielcxm

Frame C:
cwptgkkctqkllkmrgcihlsrkrr******s*fn**r*y*k***qyfiviiivik***
s*ctnksisriri*tiyq*s*rqerss*kc*sr*t*---

---snvfils*insfiffndfstrs*k*yrg*fiwcwygyfrsklglvvrskwcnrccfn
hftfldf*sl*tnsxisw*isitripskxnfysfnsss*st*s*yl*sipmlviiymlkl
i*syhhqchwfklmilvnhsreiriiirc**sfvxc

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFC234 (VFC234Q) /CSM/VF/VFC2-B/VFC234Q.Seq.d/ 1396 0.0
VFJ381 (VFJ381Q) /CSM/VF/VFJ3-D/VFJ381Q.Seq.d/ 831 0.0
VFH619 (VFH619Q) /CSM/VF/VFH6-A/VFH619Q.Seq.d/ 831 0.0
SFK666 (SFK666Q) /CSM/SF/SFK6-C/SFK666Q.Seq.d/ 831 0.0
SFG327 (SFG327Q) /CSM/SF/SFG3-B/SFG327Q.Seq.d/ 831 0.0
CFH740 (CFH740Q) /CSM/CF/CFH7-B/CFH740Q.Seq.d/ 831 0.0
AFL320 (AFL320Q) /CSM/AF/AFL3-A/AFL320Q.Seq.d/ 831 0.0
AFK811 (AFK811Q) /CSM/AF/AFK8-A/AFK811Q.Seq.d/ 831 0.0
AFG186 (AFG186Q) /CSM/AF/AFG1-D/AFG186Q.Seq.d/ 831 0.0
AFA617 (AFA617Q) /CSM/AF/AFA6-A/AFA617Q.Seq.d/ 831 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AE014820|AE014820.1 Plasmodium falciparum 3D7 chromosome 14 section 5 of 13 of the complete sequence. 42 5e-06 6
AL844509|AL844509.1 Plasmodium falciparum chromosome 13. 48 4e-04 4
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 48 0.001 9
AC122622|AC122622.4 Rattus norvegicus clone CH230-71J20, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces. 54 0.003 1
AJ238237|AJ238237.1 Plasmodium falciparum gene encoding nucleosome assembly protein. 54 0.003 1
BU497960|BU497960.1 PfESToab90g02.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:HRP3_PLAFS P14586 HISTIDINE-RICH PROTEIN. ;, mRNA sequence. 54 0.003 1
M17028|M17028.1 P.falciparum histidine-rich protein genes. 54 0.003 1
BU498497|BU498497.1 PfESToab97h12.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:ASP_PLAFS P13825 ASPARTIC ACID-RICH PROTEIN PRECURSOR. [1] ;, mRNA sequence. 54 0.003 1
AJ006966|AJ006966.1 Plasmodium falciparum genes encoding gamma-glutamylcysteine synthetase and aspartic acid-rich protein. 54 0.003 1
AF543685|AF543685.1 Plasmodium falciparum 3D7 aspartic acid-rich protein (ARP) mRNA, complete cds. 54 0.003 1
dna update 2003. 9.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CU633895_143(CU633895|pid:none) Podospora anserina genomic DNA c... 122 9e-27
CP001574_635(CP001574|pid:none) Micromonas sp. RCC299 chromosome... 111 2e-23
CP000583_274(CP000583|pid:none) Ostreococcus lucimarinus CCE9901... 107 3e-22
CR954203_270(CR954203|pid:none) Ostreococcus tauri strain OTTH05... 107 4e-22
FJ858915_1(FJ858915|pid:none) Brassica juncea cultivar 211000 me... 87 5e-22
AM475325_1(AM475325|pid:none) Vitis vinifera contig VV79X011009.... 93 7e-22
FJ858917_1(FJ858917|pid:none) Brassica juncea cultivar 211000 me... 86 1e-21
FJ858918_1(FJ858918|pid:none) Brassica juncea cultivar 211000 me... 86 1e-21
AY181258_1(AY181258|pid:none) Stylosanthes hamata cation diffusi... 102 1e-20
EU973024_1(EU973024|pid:none) Zea mays clone 391920 unknown mRNA. 101 2e-20
protein update 2009. 6.17
PSORT

psg: 0.75 gvh: 0.37 alm: 0.30 top: 0.53 tms: 0.07 mit: 0.17 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: nuclear
24.0 %: endoplasmic reticulum
20.0 %: cytoplasmic
16.0 %: mitochondrial
8.0 %: plasma membrane
4.0 %: Golgi
4.0 %: vesicles of secretory system

>> prediction for VFC234 is nuc

5' end seq. ID VFC234F
5' end seq.
>VFC234F.Seq
ACTGTTGGCCTACTGGAAAAAAATGTACTCAGAAATTATTGAAGATGAGGGGATGTATAC
ATCTCTCAAGAAAAAGGAGATAATAATAATGATGATAAAGTTAGTTTAATTAATAAAGAT
AGTATTAGAAATAGTAATGACAGTATTTCATCGTCATCATCATCGTCATCAAATGATGAT
GATCATAATGTACCAATAAATCCATCAGTAGAATTAGAATTTGAACAATATATCAATAAT
CATAGAGGCAAGAACGTTCATCGTAGAAATGTTAAAGCCGATGAACTTAGAT--------
--
Length of 5' end seq. 292
3' end seq. ID VFC234Z
3' end seq.
>VFC234Z.Seq
----------GTAGCAATGTTTTTATATTGTCGTAGATTAACTCTTTCATCTTCTTCAAT
GATTTTAGCACCCGATCATAGAAATGATATCGTGGTTAATTCATTTGGTGTTGGTATGGC
TATTTTAGGTCAAAATTGGGTTTGGTGGTTAGATCCAAGTGGTGCAATCGTTGTTGCTTT
AATCATTTTACGTTCTTGGACTTCTGAAGCCTATGAACAAATTCANTTATTAGTTGGTAA
ATCAGCATCACCAGAATTCCTTCAAAANTTAACTTTTATAGCTTTAACTCATCATCCTGA
AGTACTTAAAGTTGATACTTGTAGAGCATTCCCATGTTGGTAATAATTTATATGTTGAAG
TTGATATAGTCTTACCACCATCAATGCCATTGGTTCAAACTCATGATATTGGTGAATCAC
TCAAGAGAAATTAGAATCATTATCAGATGTTGATAGAGCTTTGTTNCATGTT
Length of 3' end seq. 462
Connected seq. ID VFC234P
Connected seq.
>VFC234P.Seq
ACTGTTGGCCTACTGGAAAAAAATGTACTCAGAAATTATTGAAGATGAGGGGATGTATAC
ATCTCTCAAGAAAAAGGAGATAATAATAATGATGATAAAGTTAGTTTAATTAATAAAGAT
AGTATTAGAAATAGTAATGACAGTATTTCATCGTCATCATCATCGTCATCAAATGATGAT
GATCATAATGTACCAATAAATCCATCAGTAGAATTAGAATTTGAACAATATATCAATAAT
CATAGAGGCAAGAACGTTCATCGTAGAAATGTTAAAGCCGATGAACTTAGAT--------
--GTAGCAATGTTTTTATATTGTCGTAGATTAACTCTTTCATCTTCTTCAATGATTTTAG
CACCCGATCATAGAAATGATATCGTGGTTAATTCATTTGGTGTTGGTATGGCTATTTTAG
GTCAAAATTGGGTTTGGTGGTTAGATCCAAGTGGTGCAATCGTTGTTGCTTTAATCATTT
TACGTTCTTGGACTTCTGAAGCCTATGAACAAATTCANTTATTAGTTGGTAAATCAGCAT
CACCAGAATTCCTTCAAAANTTAACTTTTATAGCTTTAACTCATCATCCTGAAGTACTTA
AAGTTGATACTTGTAGAGCATTCCCATGTTGGTAATAATTTATATGTTGAAGTTGATATA
GTCTTACCACCATCAATGCCATTGGTTCAAACTCATGATATTGGTGAATCACTCAAGAGA
AATTAGAATCATTATCAGATGTTGATAGAGCTTTGTTNCATGTT
Length of connected seq. 754
Full length Seq ID -
Full length Seq. -
Length of full length seq. -