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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFC231
Library VF
(Link to library)
Clone ID VFC231
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16593-1
Original site URL
Representative seq. ID VFC231P
(Link to Original site)
Representative DNA sequence 
>VFC231 (VFC231Q) /CSM/VF/VFC2-B/VFC231Q.Seq.d/
AAATCTAACAANANGAAAAATAAAAATGAATAAATTCATTTTATTATTATCATTAGTCAC
ATTATCATGTGTACTTGCAGTTCCACAACTCCCAGCTGCTCAACAATATTATATGAAAGG
TTCATTCAATATTCCATATTTCAATATTGTTGAACCAATTGAATTAATTTATGATTCAGT
TAATAATCGTCAATATATTAGTGTTTACAATGGTATGGATATTACCATCAACTTTTACAA
TCAAGGATAATACATACAATGTAGGTCCAGTTAAATATGATATGGTTTGTACCACTACCC
CAGGTAATGGTTCATTAGTTAATGTTTTACCAACTGAACCTTCATCATGGGTTTACAATG
GTACATCAACTGTTAACGGTGTCCAAGTCTTTGGTTACAGTCAAAAGATCACTCAATATG
GTCGTACTXXXXXXXXXXAAGTTTTAGCTATTGGTTATGGTACTTATCAAGGTCAAGATT
ATTTCTTAGTTAAAAACTCTTGGTCAACTAACTGGGGTATGGATGGTTATGTTTACANGG
CTAGAAATGATAACAATTTATGNGGTGTTTCAAGTCAAGCCACCTATCCAATTCCAACAA
AGAATTAAATTTGCTTCAATAAATCCAATAAATATATATT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
i*qxek*k*insfyyyh*shyhvylqfhnsqllnnii*kvhsifhisillnqln*FMIQL
IIVNILVFTMVWILPSTFTIKDNTYNVGPVKYDMVCTTTPGNGSLVNVLPTEPSSWVYNG
TSTVNGVQVFGYSQKITQYGRT---

---VLAIGYGTYQGQDYFLVKNSWSTNWGMDGYVYXARNDNNLXGVSSQATYPIPTKN*i
cfnksnkyi
Translated Amino Acid sequence (All Frames) 
Frame A:
ksnxxknkne*ihfiiiishiimctcssttpscstilyerfiqysifqyc*tn*inl*fs
**ssiy*clqwygyyhqllqsriihtm*vqlnmiwfvplpqvmvh*lmfyqlnlhhgftm
vhqlltvskslvtvkrslnmvv---

---kf*llvmvlikvkiis*lktlgqltgvwmvmftxlemitiyxvfqvkppiqfqqrik
fasinpiniy

Frame B:
nltxxkikmnkfilllslvtlscvlavpqlpaaqqyymkgsfnipyfnivepieliydsv
nnrqyisvyngmditinfynqg*yiqcrss*i*yglyhypr*wfis*cftn*tfimglqw
yinc*rcpslwlqskdhsiwsy---

---sfsywlwylsrsrlfls*kllvn*lgygwlclxg*k**qfmxcfksshlsnsnkeln
llq*iq*iyi

Frame C:
i*qxek*k*insfyyyh*shyhvylqfhnsqllnnii*kvhsifhisillnqln*FMIQL
IIVNILVFTMVWILPSTFTIKDNTYNVGPVKYDMVCTTTPGNGSLVNVLPTEPSSWVYNG
TSTVNGVQVFGYSQKITQYGRT---

---VLAIGYGTYQGQDYFLVKNSWSTNWGMDGYVYXARNDNNLXGVSSQATYPIPTKN*i
cfnksnkyi
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFC231 (VFC231Q) /CSM/VF/VFC2-B/VFC231Q.Seq.d/                       1185   0.0
VFO233 (VFO233Q) /CSM/VF/VFO2-B/VFO233Q.Seq.d/                        811   0.0
VFI581 (VFI581Q) /CSM/VF/VFI5-D/VFI581Q.Seq.d/                        811   0.0
VFC775 (VFC775Q) /CSM/VF/VFC7-D/VFC775Q.Seq.d/                        811   0.0
SFF792 (SFF792Q) /CSM/SF/SFF7-D/SFF792Q.Seq.d/                        811   0.0
CHB151 (CHB151Q) /CSM/CH/CHB1-C/CHB151Q.Seq.d/                        811   0.0
CFC215 (CFC215Q) /CSM/CF/CFC2-A/CFC215Q.Seq.d/                        811   0.0
AFA867 (AFA867Q) /CSM/AF/AFA8-C/AFA867Q.Seq.d/                        811   0.0
VFM638 (VFM638Q) /CSM/VF/VFM6-B/VFM638Q.Seq.d/                        809   0.0
VFF680 (VFF680Q) /CSM/VF/VFF6-D/VFF680Q.Seq.d/                        809   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AE014843|AE014843.1 Plasmodium falciparum 3D7 chromosome 11 section 8 of 8 of the complete sequence.    40  0.016  7
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.          36  0.029  8
BX248304|BX248304.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-196K22.    52  0.037  3
BX248104|BX248104.5 Zebrafish DNA sequence from clone DKEY-77P13 in linkage group 20.    40  0.067  4
BX571692|BX571692.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-159C17.    42  0.074  3
AC135960|AC135960.6 Pan troglodytes clone rp43-55o12, WORKING DRAFT SEQUENCE, 5 ordered pieces.    36  0.092  4
AL731859|AL731859.12 Zebrafish DNA sequence from clone BUSM1-12G7 in linkage group 9.    42  0.12  5
AZ539545|AZ539545.1 ENTDG38TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    48  0.13  1
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    34  0.16  9
AC007559|AC007559.3 Homo sapiens BAC clone RP11-364J6 from 2, complete sequence.    36  0.20  5
dna update 2003. 9.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB081844_1(AB081844|pid:none) Engraulis japonicus aCat2 mRNA for...    76   7e-13
DQ280314_1(DQ280314|pid:none) Hymeniacidon perlevis cathepsin L ...    75   1e-12
AY336798_1(AY336798|pid:none) Rhipicephalus haemaphysaloides hae...    75   1e-12
AY208822_1(AY208822|pid:none) Rhipicephalus appendiculatus midgu...    75   1e-12
AB020491_1(AB020491|pid:none) Haemaphysalis longicornis mRNA for...    74   3e-12
AY363263_1(AY363263|pid:none) Triatoma infestans cathepsin L-lik...    74   4e-12
EF070511_1(EF070511|pid:none) Maconellicoccus hirsutus clone WHM...    73   6e-12
AJ583512_1(AJ583512|pid:none) Diabrotica virgifera virgifera mRN...    73   8e-12
BC093339_1(BC093339|pid:none) Danio rerio cathepsin S, b.2, mRNA...    73   8e-12
EZ000236_1(EZ000236|pid:none) TSA: Amblyomma americanum Contig61...    73   8e-12
protein update 2009. 6.17
PSORT 

 psg: 0.97  gvh: 0.58  alm: 0.21  top: 0.47  tms: 0.07  mit: 0.32  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 16.0 %: cytoplasmic
	 16.0 %: mitochondrial
	 16.0 %: nuclear
	  8.0 %: Golgi
	  8.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: extracellular, including cell wall

>> prediction for VFC231 is end
5' end seq. ID VFC231F
5' end seq. 
>VFC231F.Seq
AAATCTAACAANANGAAAAATAAAAATGAATAAATTCATTTTATTATTATCATTAGTCAC
ATTATCATGTGTACTTGCAGTTCCACAACTCCCAGCTGCTCAACAATATTATATGAAAGG
TTCATTCAATATTCCATATTTCAATATTGTTGAACCAATTGAATTAATTTATGATTCAGT
TAATAATCGTCAATATATTAGTGTTTACAATGGTATGGATATTACCATCAACTTTTACAA
TCAAGGATAATACATACAATGTAGGTCCAGTTAAATATGATATGGTTTGTACCACTACCC
CAGGTAATGGTTCATTAGTTAATGTTTTACCAACTGAACCTTCATCATGGGTTTACAATG
GTACATCAACTGTTAACGGTGTCCAAGTCTTTGGTTACAGTCAAAAGATCACTCAATATG
GTCGTACT----------
Length of 5' end seq. 428
3' end seq. ID VFC231Z
3' end seq. 
>VFC231Z.Seq
----------AAGTTTTAGCTATTGGTTATGGTACTTATCAAGGTCAAGATTATTTCTTA
GTTAAAAACTCTTGGTCAACTAACTGGGGTATGGATGGTTATGTTTACANGGCTAGAAAT
GATAACAATTTATGNGGTGTTTCAAGTCAAGCCACCTATCCAATTCCAACAAAGAATTAA
ATTTGCTTCAATAAATCCAATAAATATATATT
Length of 3' end seq. 202
Connected seq. ID VFC231P
Connected seq. 
>VFC231P.Seq
AAATCTAACAANANGAAAAATAAAAATGAATAAATTCATTTTATTATTATCATTAGTCAC
ATTATCATGTGTACTTGCAGTTCCACAACTCCCAGCTGCTCAACAATATTATATGAAAGG
TTCATTCAATATTCCATATTTCAATATTGTTGAACCAATTGAATTAATTTATGATTCAGT
TAATAATCGTCAATATATTAGTGTTTACAATGGTATGGATATTACCATCAACTTTTACAA
TCAAGGATAATACATACAATGTAGGTCCAGTTAAATATGATATGGTTTGTACCACTACCC
CAGGTAATGGTTCATTAGTTAATGTTTTACCAACTGAACCTTCATCATGGGTTTACAATG
GTACATCAACTGTTAACGGTGTCCAAGTCTTTGGTTACAGTCAAAAGATCACTCAATATG
GTCGTACT----------AAGTTTTAGCTATTGGTTATGGTACTTATCAAGGTCAAGATT
ATTTCTTAGTTAAAAACTCTTGGTCAACTAACTGGGGTATGGATGGTTATGTTTACANGG
CTAGAAATGATAACAATTTATGNGGTGTTTCAAGTCAAGCCACCTATCCAATTCCAACAA
AGAATTAAATTTGCTTCAATAAATCCAATAAATATATATT
Length of connected seq. 630
Full length Seq ID -
Full length Seq. -
Length of full length seq. -