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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM219
Library AF
(Link to library)
Clone ID AFM219
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>AFM219 (AFM219Q) /CSM/AF/AFM2-A/AFM219Q.Seq.d/
TTTTCGCTGATAATTCTGATGCTCCAGATAGAAACAATAGTGGTAAAAATTATCCATTAG
ATATTACTCTTACAATGAATTTAGATGATAAATCAAATTATTTTTATGATAATCAAGAAT
TTTTCCCAATTGATGGAAGAGGATTTGATGTAGATCAACAATTCCGTAACTATTATGATG
ATGAAAGTAAAGCAAATCCAAAACCATATCATAATTATCACTTCTGTGCCAAAATTACCA
ATAGTCGTTTCACATACAAAGGTTTTGAAACATTTAGATTCGTAGGTGATGATGATGTTT
GGGTATTCATTGATAGAAAGTTGGTTGTAGATTTGGGTGGTTTACATATTGCTCAAGAGA
AAACTATTGATCTTACTAAACTTGGTCTTGTTGTTAATAAACTCTATGTAATTGATTTCT
TCTATTGTGAAAGACATACTTCAAGATCAACAATTCGTATTGAAACAACAATTGAACTTC
AATGTCCATGGTATGATTTCTGTGGTGTATGTACTGGTAATGGTTTAAGTTGTTGTAATG
TTACAAGAGATTGTGATGATGGTAATCCATGTACAATTGATCTCTGTCCAGAGCCAACCC
GCTGTATTTGATCTAAAXXXXXXXXXX
sequence update 2009. 4. 3
Translated Amino Acid sequence 
FADNSDAPDRNNSGKNYPLDITLTMNLDDKSNYFYDNQEFFPIDGRGFDVDQQFRNYYDD
ESKANPKPYHNYHFCAKITNSRFTYKGFETFRFVGDDDVWVFIDRKLVVDLGGLHIAQEK
TIDLTKLGLVVNKLYVIDFFYCERHTSRSTIRIETTIELQCPWYDFCGVCTGNGLSCCNV
TRDCDDGNPCTIDLCPEPTRCI*s---
Translated Amino Acid sequence (All Frames) 
Frame A:
fsliilmlqietivvkiih*illlq*i*minqiifmiiknfsqlmeedlm*innsvtimm
mkvkqiqnhiiiitsvpklpivvshtkvlkhlds*vmmmfgyslieswl*iwvvyillkr
kllillnlvlllinsm*lissivkdilqdqqfvlkqqlnfnvhgmisvvyvlvmv*vvvm
lqeivmmvihvqlisvqsqpavfdl---


Frame B:
fr**f*csr*kq*w*klsiryysynefr**iklfl**srifpn*wkri*crstip*ll**
*k*sksktis*lsllcqnyq*sfhiqrf*ni*irr***clgih**kvgcrfgwftycsre
ny*sy*twscc**tlcn*flll*ktyfkinnsy*nnn*tsmsmv*flwcmyw*wfkll*c
ykrl**w*smyn*slsranplyli*---


Frame C:
FADNSDAPDRNNSGKNYPLDITLTMNLDDKSNYFYDNQEFFPIDGRGFDVDQQFRNYYDD
ESKANPKPYHNYHFCAKITNSRFTYKGFETFRFVGDDDVWVFIDRKLVVDLGGLHIAQEK
TIDLTKLGLVVNKLYVIDFFYCERHTSRSTIRIETTIELQCPWYDFCGVCTGNGLSCCNV
TRDCDDGNPCTIDLCPEPTRCI*s---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFM219 (AFM219Q) /CSM/AF/AFM2-A/AFM219Q.Seq.d/                       1223   0.0
AFJ749 (AFJ749Q) /CSM/AF/AFJ7-C/AFJ749Q.Seq.d/                       1207   0.0
SFK324 (SFK324Q) /CSM/SF/SFK3-A/SFK324Q.Seq.d/                       1205   0.0
AFN407 (AFN407Q) /CSM/AF/AFN4-A/AFN407Q.Seq.d/                       1170   0.0
AHJ178 (AHJ178Q) /CSM/AH/AHJ1-D/AHJ178Q.Seq.d/                       1164   0.0
AHL773 (AHL773Q) /CSM/AH/AHL7-D/AHL773Q.Seq.d/                       1162   0.0
AFM652 (AFM652Q) /CSM/AF/AFM6-C/AFM652Q.Seq.d/                       1158   0.0
AFO506 (AFO506Q) /CSM/AF/AFO5-A/AFO506Q.Seq.d/                       1142   0.0
AHL796 (AHL796Q) /CSM/AH/AHL7-D/AHL796Q.Seq.d/                       1072   0.0
CHR716 (CHR716Q) /CSM/CH/CHR7-A/CHR716Q.Seq.d/                       1059   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ329465) Dictyostelium discoideum cDNA clone:dda25e06, 5' ...  1223   0.0    1
(BJ327449) Dictyostelium discoideum cDNA clone:dda20b13, 5' ...  1187   0.0    2
(BJ390115) Dictyostelium discoideum cDNA clone:dds21p05, 5' ...  1185   0.0    2
(BJ330045) Dictyostelium discoideum cDNA clone:dda27n02, 5' ...  1170   0.0    1
(BJ335355) Dictyostelium discoideum cDNA clone:dda49k19, 5' ...  1164   0.0    1
(BJ336677) Dictyostelium discoideum cDNA clone:dda54b19, 5' ...  1162   0.0    1
(BJ329868) Dictyostelium discoideum cDNA clone:dda26g14, 5' ...  1158   0.0    1
(BJ328931) Dictyostelium discoideum cDNA clone:dda30k01, 5' ...  1142   0.0    1
(BJ336737) Dictyostelium discoideum cDNA clone:dda54p23, 5' ...  1053   0.0    2
(BJ337014) Dictyostelium discoideum cDNA clone:dda55o24, 5' ...  1039   0.0    2
dna update 2009. 4.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q86HT1) RecName: Full=Protein psiL; Flags: Precursor;  &AC11695...   219   4e-56
(Q94494) RecName: Full=Protein psiH; Flags: Precursor;  &U67940_...   219   4e-56
(Q968Z6) RecName: Full=Protein psiA; AltName: Full=Prespore-cell...   204   1e-51
(Q557E9) RecName: Full=Protein psiG; Flags: Precursor;  &AC11568...   202   6e-51
(Q55FQ4) RecName: Full=Protein psiB; Flags: Precursor;                186   3e-46
(Q54VS2) RecName: Full=Protein psiP; Flags: Precursor;                172   5e-42
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor;                152   9e-36
(Q1ZXC5) RecName: Full=Protein psiC; Flags: Precursor;                152   9e-36
(Q54FD8) RecName: Full=Protein psiD; Flags: Precursor;                149   8e-35
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                148   1e-34
protein update 2009. 4. 5
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM219 is

5' end seq. ID AFM219F
5' end seq. 
>AFM219F.Seq
TTTTCGCTGATAATTCTGATGCTCCAGATAGAAACAATAGTGGTAAAAATTATCCATTAG
ATATTACTCTTACAATGAATTTAGATGATAAATCAAATTATTTTTATGATAATCAAGAAT
TTTTCCCAATTGATGGAAGAGGATTTGATGTAGATCAACAATTCCGTAACTATTATGATG
ATGAAAGTAAAGCAAATCCAAAACCATATCATAATTATCACTTCTGTGCCAAAATTACCA
ATAGTCGTTTCACATACAAAGGTTTTGAAACATTTAGATTCGTAGGTGATGATGATGTTT
GGGTATTCATTGATAGAAAGTTGGTTGTAGATTTGGGTGGTTTACATATTGCTCAAGAGA
AAACTATTGATCTTACTAAACTTGGTCTTGTTGTTAATAAACTCTATGTAATTGATTTCT
TCTATTGTGAAAGACATACTTCAAGATCAACAATTCGTATTGAAACAACAATTGAACTTC
AATGTCCATGGTATGATTTCTGTGGTGTATGTACTGGTAATGGTTTAAGTTGTTGTAATG
TTACAAGAGATTGTGATGATGGTAATCCATGTACAATTGATCTCTGTCCAGAGCCAACCC
GCTGTATTTGATCTAAAXXXXXXXXXX
Length of 5' end seq. 627
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -