NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFC196
Library VF
(Link to library)
Clone ID VFC196
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13856-1
Original site URL
Representative seq. ID VFC196P
(Link to Original site)
Representative DNA sequence 
>VFC196 (VFC196Q) /CSM/VF/VFC1-D/VFC196Q.Seq.d/
ACTGTTGGCCTACTGGNAATAATATCTGTGACTATCTGTAAAAAAAACAAAGAATGAAGA
CTCTTTCTTTATTATTTATTGTTATTTCTTTAATCTCCTTAATCAATGCTGATGTTTTTT
CAAACATAGTTGATTTTGGATTAGTTTCAAAAAGTAAATTTGTTAGTCAAACTTTTTCAA
ATATTGCACTTCCAGCATCATCATTTAATTTGGAAGGTGTCCAAGTTGTCATTTTAAATA
AAACATCAAATCAAGCTTTTAACCATAACTTCATTTCTACATGCACAATTGATTTCACAA
GTAGTGGTAGAAAAATTGTATCATTCACTGCTTCAAATATTGAAAATCAATTAGTTTTCC
CATCACCATATTTAGTTCAAATTTCTGGTAATTTAAATTTAACAGTTTCAATTTATGCAT
TAAATGTTGAACCACAAGATATTAGTATTGCATATTATATGAAATGGGAAGAGAATAGTG
GAAGTAAXXXXXXXXXXTTCAAAGGTGCAACATACGTAACTCAAGCAGTTTATAATAATA
CTGTCCCATTAAAGAATGTTATTGCTAATTTTGGTTTTTATGTTGGTTATCCAACTCCAA
CAACTACAACTACCACTGGTGGTGGTTCAACATCCCATGCTACAACCTCTACCACTGGTG
GTGGTTCAACATCTCACGTCACAACCTCTACCACTGGTGGTGGTTCAACAAGTCCATCTA
CCACTCACGCATCAACAACTGGTGGTGGTCATACAACAGGTCCATCAACATCATCATCAT
CACATGCAACCTCTGGTCATCACGGTTCACACTCACAATCTGAATCTGGTTCACATTCAC
AATCTGAATCTGGCTCACAATCTGAATCTGGCTCACAATCACAATCACAATCACAATCAC
AATCACAATCTGAATCAGGATCAGATTCATTCACAACCACCACAGCAGGTTCACAATCTG
ATTCATTCCCAGATTCATCAGATGGTCCATCTTATACANCTGGTTCTTCTGGTTCATCAG
GTACTTACATTTGGAATGGTAAAGGTGTTAAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
cwptgnnicdyl*KKQRMKTLSLLFIVISLISLINADVFSNIVDFGLVSKSKFVSQTFSN
IALPASSFNLEGVQVVILNKTSNQAFNHNFISTCTIDFTSSGRKIVSFTASNIENQLVFP
SPYLVQISGNLNLTVSIYALNVEPQDISIAYYMKWEENSGS---

---FKGATYVTQAVYNNTVPLKNVIANFGFYVGYPTPTTTTTTGGGSTSHATTSTTGGGS
TSHVTTSTTGGGSTSPSTTHASTTGGGHTTGPSTSSSSHATSGHHGSHSQSESGSHSQSE
SGSQSESGSQSQSQSQSQSQSESGSDSFTTTTAGSQSDSFPDSSDGPSYTXGSSGSSGTY
IWNGKGVK
Translated Amino Acid sequence (All Frames) 
Frame A:
tvgllxiisvtickknke*rlflyylllfl*sp*smlmffqt*lild*fqkvnllvklfq
ilhfqhhhliwkvsklsf*ikhqiklltitsflhaqlisqvvveklyhsllqilkin*fs
hhhi*fkflvi*i*qfqfmh*mlnhkilvlhii*ngkrivev---

---FKGATYVTQAVYNNTVPLKNVIANFGFYVGYPTPTTTTTTGGGSTSHATTSTTGGGS
TSHVTTSTTGGGSTSPSTTHASTTGGGHTTGPSTSSSSHATSGHHGSHSQSESGSHSQSE
SGSQSESGSQSQSQSQSQSQSESGSDSFTTTTAGSQSDSFPDSSDGPSYTXGSSGSSGTY
IWNGKGVK

Frame B:
llaywx*yl*lsvkktknedsffiiycyffnllnqc*cffkhs*fwisfkk*ic*snffk
yctssiii*fgrcpschfk*nikssf*p*lhfymhn*fhk*w*knciihcfky*ksisfp
itifssnfw*fkfnsfnlcikc*ttry*ycilyemgre*wk*---

---skvqht*lkqfiiilsh*rmlllilvfmlviqlqqlqlplvvvqhpmlqplplvvvq
hltsqplplvvvqqvhlplthqqlvvviqqvhqhhhhhmqplvitvhthnlnlvhihnln
lahnlnlahnhnhnhnhnhnlnqdqihsqppqqvhnlihsqihqmvhlixlvllvhqvlt
fgmvkvlk

Frame C:
cwptgnnicdyl*KKQRMKTLSLLFIVISLISLINADVFSNIVDFGLVSKSKFVSQTFSN
IALPASSFNLEGVQVVILNKTSNQAFNHNFISTCTIDFTSSGRKIVSFTASNIENQLVFP
SPYLVQISGNLNLTVSIYALNVEPQDISIAYYMKWEENSGS---

---qrcnirnsssl**ycpikecyc*fwflcwlsnsnnynyhwwwfnipcynlyhwwwfn
isrhnlyhwwwfnksiyhsrinnwwwsynrsiniiiitcnlwssrftlti*iwftfti*i
wlti*iwltitititititi*irirfihnhhsrfti*fiprfirwsilyxwffwfirylh
lew*rc*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFC196 (VFC196Q) /CSM/VF/VFC1-D/VFC196Q.Seq.d/                       1564   0.0
VFL453 (VFL453Q) /CSM/VF/VFL4-C/VFL453Q.Seq.d/                        900   0.0
VFM327 (VFM327Q) /CSM/VF/VFM3-B/VFM327Q.Seq.d/                        896   0.0
VFO658 (VFO658Q) /CSM/VF/VFO6-C/VFO658Q.Seq.d/                        884   0.0
VFL859 (VFL859Q) /CSM/VF/VFL8-C/VFL859Q.Seq.d/                        884   0.0
VFI764 (VFI764Q) /CSM/VF/VFI7-C/VFI764Q.Seq.d/                        884   0.0
VFI289 (VFI289Q) /CSM/VF/VFI2-D/VFI289Q.Seq.d/                        884   0.0
VFH404 (VFH404Q) /CSM/VF/VFH4-A/VFH404Q.Seq.d/                        884   0.0
VFG132 (VFG132Q) /CSM/VF/VFG1-B/VFG132Q.Seq.d/                        884   0.0
VFN739 (VFN739Q) /CSM/VF/VFN7-B/VFN739Q.Seq.d/                        878   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U72746|U72746.1 Dictyostelium discoideum cysteine proteinase (cprG) mRNA, complete cds.    60  6e-05  1
AL833783|AL833783.8 Mouse DNA sequence from clone RP23-287B11 on chromosome 4.    44  0.006  4
AL133496|AL133496.1 Drosophila melanogaster clone BACR43C24 WORKING DRAFT SEQUENCE; 144 unordered pieces.    44  0.029  3
CF350937|CF350937.1 rl65c10.y1 Meloidogyne javanica J2 SMART pGEM Meloidogyne javanica cDNA 5', mRNA sequence.    34  0.030  3
AC020297|AC020297.1 Drosophila melanogaster, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    44  0.042  2
AL954173|AL954173.8 Zebrafish DNA sequence from clone CH211-272N13.    36  0.053  5
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36  0.063  10
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    34  0.085  10
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    34  0.18  6
AC117080|AC117080.2 Dictyostelium discoideum chromosome 2 map complement(821514-735598) strain AX4, complete sequence.    38  0.40  4
dna update 2003. 9.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM446570_1(AM446570|pid:none) Vitis vinifera contig VV78X034573....    48   5e-04
EU557269_8(EU557269|pid:none) Teleogryllus emma mitochondrion, c...    37   1.5
CP000123_158(CP000123|pid:none) Mycoplasma capricolum subsp. cap...    35   3.3
CP001068_1063(CP001068|pid:none) Ralstonia pickettii 12J chromos...    35   3.3
CU695238_87(CU695238|pid:none) Ralstonia solanacearum strain Mol...    35   5.7
CU914168_1593(CU914168|pid:none) Ralstonia solanacearum strain I...    35   5.7
CU633749_1834(CU633749|pid:none) Cupriavidus taiwanensis str. LM...    34   7.4
protein update 2009. 2. 6
PSORT 

 psg: 0.98  gvh: 0.78  alm: 0.40  top: 0.13  tms: 0.00  mit: 0.35  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: extracellular, including cell wall
	 12.0 %: cytoplasmic
	 12.0 %: vacuolar
	  8.0 %: mitochondrial
	  8.0 %: Golgi
	  8.0 %: nuclear
	  8.0 %: endoplasmic reticulum

>> prediction for VFC196 is exc
5' end seq. ID VFC196F
5' end seq. 
>VFC196F.Seq
ACTGTTGGCCTACTGGNAATAATATCTGTGACTATCTGTAAAAAAAACAAAGAATGAAGA
CTCTTTCTTTATTATTTATTGTTATTTCTTTAATCTCCTTAATCAATGCTGATGTTTTTT
CAAACATAGTTGATTTTGGATTAGTTTCAAAAAGTAAATTTGTTAGTCAAACTTTTTCAA
ATATTGCACTTCCAGCATCATCATTTAATTTGGAAGGTGTCCAAGTTGTCATTTTAAATA
AAACATCAAATCAAGCTTTTAACCATAACTTCATTTCTACATGCACAATTGATTTCACAA
GTAGTGGTAGAAAAATTGTATCATTCACTGCTTCAAATATTGAAAATCAATTAGTTTTCC
CATCACCATATTTAGTTCAAATTTCTGGTAATTTAAATTTAACAGTTTCAATTTATGCAT
TAAATGTTGAACCACAAGATATTAGTATTGCATATTATATGAAATGGGAAGAGAATAGTG
GAAGTAA----------
Length of 5' end seq. 487
3' end seq. ID VFC196Z
3' end seq. 
>VFC196Z.Seq
----------TTCAAAGGTGCAACATACGTAACTCAAGCAGTTTATAATAATACTGTCCC
ATTAAAGAATGTTATTGCTAATTTTGGTTTTTATGTTGGTTATCCAACTCCAACAACTAC
AACTACCACTGGTGGTGGTTCAACATCCCATGCTACAACCTCTACCACTGGTGGTGGTTC
AACATCTCACGTCACAACCTCTACCACTGGTGGTGGTTCAACAAGTCCATCTACCACTCA
CGCATCAACAACTGGTGGTGGTCATACAACAGGTCCATCAACATCATCATCATCACATGC
AACCTCTGGTCATCACGGTTCACACTCACAATCTGAATCTGGTTCACATTCACAATCTGA
ATCTGGCTCACAATCTGAATCTGGCTCACAATCACAATCACAATCACAATCACAATCACA
ATCTGAATCAGGATCAGATTCATTCACAACCACCACAGCAGGTTCACAATCTGATTCATT
CCCAGATTCATCAGATGGTCCATCTTATACANCTGGTTCTTCTGGTTCATCAGGTACTTA
CATTTGGAATGGTAAAGGTGTTAAAA
Length of 3' end seq. 556
Connected seq. ID VFC196P
Connected seq. 
>VFC196P.Seq
ACTGTTGGCCTACTGGNAATAATATCTGTGACTATCTGTAAAAAAAACAAAGAATGAAGA
CTCTTTCTTTATTATTTATTGTTATTTCTTTAATCTCCTTAATCAATGCTGATGTTTTTT
CAAACATAGTTGATTTTGGATTAGTTTCAAAAAGTAAATTTGTTAGTCAAACTTTTTCAA
ATATTGCACTTCCAGCATCATCATTTAATTTGGAAGGTGTCCAAGTTGTCATTTTAAATA
AAACATCAAATCAAGCTTTTAACCATAACTTCATTTCTACATGCACAATTGATTTCACAA
GTAGTGGTAGAAAAATTGTATCATTCACTGCTTCAAATATTGAAAATCAATTAGTTTTCC
CATCACCATATTTAGTTCAAATTTCTGGTAATTTAAATTTAACAGTTTCAATTTATGCAT
TAAATGTTGAACCACAAGATATTAGTATTGCATATTATATGAAATGGGAAGAGAATAGTG
GAAGTAA----------TTCAAAGGTGCAACATACGTAACTCAAGCAGTTTATAATAATA
CTGTCCCATTAAAGAATGTTATTGCTAATTTTGGTTTTTATGTTGGTTATCCAACTCCAA
CAACTACAACTACCACTGGTGGTGGTTCAACATCCCATGCTACAACCTCTACCACTGGTG
GTGGTTCAACATCTCACGTCACAACCTCTACCACTGGTGGTGGTTCAACAAGTCCATCTA
CCACTCACGCATCAACAACTGGTGGTGGTCATACAACAGGTCCATCAACATCATCATCAT
CACATGCAACCTCTGGTCATCACGGTTCACACTCACAATCTGAATCTGGTTCACATTCAC
AATCTGAATCTGGCTCACAATCTGAATCTGGCTCACAATCACAATCACAATCACAATCAC
AATCACAATCTGAATCAGGATCAGATTCATTCACAACCACCACAGCAGGTTCACAATCTG
ATTCATTCCCAGATTCATCAGATGGTCCATCTTATACANCTGGTTCTTCTGGTTCATCAG
GTACTTACATTTGGAATGGTAAAGGTGTTAAAA
Length of connected seq. 1043
Full length Seq ID -
Full length Seq. -
Length of full length seq. -