>VFC183 (VFC183Q) /CSM/VF/VFC1-D/VFC183Q.Seq.d/
XXXXXXXXXXTTCATAATGTCGCTGACCTTTATAATAATGTTTTAATTGATACACCATTA
GCACCATACATTCAAGGTTGTTTATCAGAAGAAGATTTAGATGAAATGAATATTGAAATT
ATTAGAAATACTTTATATAAAGCTTATTTAGAAGATTTTTACAACTATTGCAAATATCTC
GGTGGTCAAACTGAATTGATCATGAGTGATATTTTAAAGTTTGAAGCAGATCGTAGATCA
ATCAATATCACAATCAATAGTTTTGGTGCAACTGAACTCTCAAAGGATGATCGTGAAAAA
CTTTACCCATCCTTAGGTCTTTTATACCCAGAAGGTACTAGCAAACTTGGTAAAGCTGAA
GACGTTGATCAAGTTAGAGGTATCCTCGAAGTTTACTCTACCTATCGTAATTTCTTCTCT
GATGGTGTCAACAACGAGAAATCATTGGAAGACTCATTCTTTGAACATGAAGTTCACTTA
AATCGTATGGCTTTTGAAGATCAATATGGTTATGGTGTCTTTTACGCTTACATTAAATTA
AGAGAACAAGAAATTAGAAATATAGTTTGGATTGCTGAATGTATTAGTCAAAATATGAAA
CAAAAAATGAAGCAATACATNCCANNCTTTAAAAAAATAA

---HNVADLYNNVLIDTPLAPYIQGCLSEEDLDEMNIEIIRNTLYKAYLEDFYNYCKYLG
GQTELIMSDILKFEADRRSINITINSFGATELSKDDREKLYPSLGLLYPEGTSKLGKAED
VDQVRGILEVYSTYRNFFSDGVNNEKSLEDSFFEHEVHLNRMAFEDQYGYGVFYAYIKLR
EQEIRNIVWIAECISQNMKQKMKQYXPXFKKI

Frame A:
---s*cr*pl**cfn*ytistihsrlfirrrfr*ney*ny*kyfi*slfrrflqllqisr
wsn*idhe*yfkv*srs*inqyhnq*fwcn*tlkg*s*ktlpilrsfiprry*qtw*s*r
r*ss*ryprsllyls*fll*wcqqreiigrlil*t*sslksygf*rsiwlwcllrlh*ik
rtrn*kysldc*my*skyetkneaihxxl*kn


Frame B:
---HNVADLYNNVLIDTPLAPYIQGCLSEEDLDEMNIEIIRNTLYKAYLEDFYNYCKYLG
GQTELIMSDILKFEADRRSINITINSFGATELSKDDREKLYPSLGLLYPEGTSKLGKAED
VDQVRGILEVYSTYRNFFSDGVNNEKSLEDSFFEHEVHLNRMAFEDQYGYGVFYAYIKLR
EQEIRNIVWIAECISQNMKQKMKQYXPXFKKI


Frame C:
---imsltfiimf*lihh*hhtfkvvyqkki*mk*ilklleilyikli*kifttianisv
vkln*s*vif*slkqivdqsisqsivlvqlnsqrmivknfthp*vfytqkvlanlvklkt
liklevsskftlpivisslmvsttrnhwkthslnmkft*ivwllkinmvmvsftltln*e
nkklei*fgllnvlvki*nkk*sntxxxlkk*

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFC183 (VFC183Q) /CSM/VF/VFC1-D/VFC183Q.Seq.d/                       1211   0.0
VSA730 (VSA730Q) /CSM/VS/VSA7-B/VSA730Q.Seq.d/                       1203   0.0
SSK721 (SSK721Q) /CSM/SS/SSK7-A/SSK721Q.Seq.d/                       1203   0.0
SSF396 (SSF396Q) /CSM/SS/SSF3-D/SSF396Q.Seq.d/                       1203   0.0
SSI279 (SSI279Q) /CSM/SS/SSI2-D/SSI279Q.Seq.d/                       1189   0.0
CFI692 (CFI692Q) /CSM/CF/CFI6-D/CFI692Q.Seq.d/                       1189   0.0
VFD146 (VFD146Q) /CSM/VF/VFD1-B/VFD146Q.Seq.d/                       1185   0.0
VFE465 (VFE465Q) /CSM/VF/VFE4-C/VFE465Q.Seq.d/                       1181   0.0
VFG544 (VFG544Q) /CSM/VF/VFG5-B/VFG544Q.Seq.d/                       1179   0.0
VFB526 (VFB526Q) /CSM/VF/VFB5-B/VFB526Q.Seq.d/                       1176   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U13150|U13150.1 Dictyostelium discoideum vacuolar ATPase subunit DVA41 mRNA, complete cds.  1180  0.0  1
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.  1108  0.0  2
BI742459|BI742459.1 kt51b11.y4 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q9W4P5 Q9W4P5 CG2934 PROTEIN. ;, mRNA sequence.   100  1e-23  3
BE580863|BE580863.1 kp82d12.y2 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to TR:Q25531 Q25531 40-KDA V-ATPASE SUBUNIT. ;, mRNA sequence.    92  1e-21  4
CB098495|CB098495.1 ku54c04.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to TR:Q9W4P5 Q9W4P5 CG2934 PROTEIN. ;, mRNA sequence.    92  3e-21  3
BE580116|BE580116.1 kq37d03.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to TR:Q25531 Q25531 40-KDA V-ATPASE SUBUNIT. ;, mRNA sequence.    86  5e-15  2
BE223572|BE223572.1 kp82d12.y1 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to TR:Q25531 Q25531 40-KDA V-ATPASE SUBUNIT. ;, mRNA sequence.    84  1e-14  2
BE029219|BE029219.1 kp26d05.y1 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to SW:VATX_BOVIN P12953 VACUOLAR ATP SYNTHASE SUBUNIT AC39 ;, mRNA sequence.    76  6e-14  2
BI516963|BI516963.1 BB160024A10C05.5 Bee Brain Normalized Library, BB16 Apis mellifera cDNA clone BB160024A10C05 5', mRNA sequence.    86  6e-13  1
BI506652|BI506652.1 BB170020B20A07.5 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170020B20A07 5', mRNA sequence.    86  6e-13  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54641) RecName: Full=V-type proton ATPase subunit d;          ...   414   e-115
A55016(A55016) lysosomal membrane protein DVA41 - slime mold (Di...   412   e-114
(Q9W4P5) RecName: Full=V-type proton ATPase subunit d 1;        ...   257   2e-67
BT081086_1(BT081086|pid:none) Caligus clemensi clone ccle-evs-51...   256   3e-67
BT077935_1(BT077935|pid:none) Lepeophtheirus salmonis clone lsal...   256   3e-67
BC042233_1(BC042233|pid:none) Xenopus laevis ATPase, H+ transpor...   253   3e-66
AC006611_1(AC006611|pid:none) Caenorhabditis elegans cosmid C30F...   253   4e-66
BC125665_1(BC125665|pid:none) Xenopus tropicalis ATPase, H+ tran...   252   7e-66
DQ440373_1(DQ440373|pid:none) Aedes aegypti clone AET-492 vacuol...   251   1e-65
(P51863) RecName: Full=V-type proton ATPase subunit d 1;        ...   251   1e-65

 psg: 0.75  gvh: 0.54  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 28.0 %: nuclear
	 24.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for VFC183 is cyt

>VFC183Z.Seq
----------TTCATAATGTCGCTGACCTTTATAATAATGTTTTAATTGATACACCATTA
GCACCATACATTCAAGGTTGTTTATCAGAAGAAGATTTAGATGAAATGAATATTGAAATT
ATTAGAAATACTTTATATAAAGCTTATTTAGAAGATTTTTACAACTATTGCAAATATCTC
GGTGGTCAAACTGAATTGATCATGAGTGATATTTTAAAGTTTGAAGCAGATCGTAGATCA
ATCAATATCACAATCAATAGTTTTGGTGCAACTGAACTCTCAAAGGATGATCGTGAAAAA
CTTTACCCATCCTTAGGTCTTTTATACCCAGAAGGTACTAGCAAACTTGGTAAAGCTGAA
GACGTTGATCAAGTTAGAGGTATCCTCGAAGTTTACTCTACCTATCGTAATTTCTTCTCT
GATGGTGTCAACAACGAGAAATCATTGGAAGACTCATTCTTTGAACATGAAGTTCACTTA
AATCGTATGGCTTTTGAAGATCAATATGGTTATGGTGTCTTTTACGCTTACATTAAATTA
AGAGAACAAGAAATTAGAAATATAGTTTGGATTGCTGAATGTATTAGTCAAAATATGAAA
CAAAAAATGAAGCAATACATNCCANNCTTTAAAAAAATAA