VFC175
Library VF
(Link to library)
Clone ID VFC175
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16358-1
Original site URL
Representative seq. ID VFC175F
(Link to Original site)
Representative DNA sequence
>VFC175 (VFC175Q) /CSM/VF/VFC1-D/VFC175Q.Seq.d/
ACTGTTGGCCTACTGGACAAAAAACATTTTCTAATAAAACAGNTAAATTAAAAAATGACT
ACCTTTAACGAATATCCATTCTTGGCTGAATTAGGCATTAAAGCTGAAAATAATGATGGA
GTCTTCAATGGAAAATGGGGAGGTGCTGGTGAAATCATCAAATGTTTAAATCCAACAAAT
AATAAAGTTATTGCAACTGTTAGAGGTGCTGCACCAGAAGAATATGAAACATGTATTCAA
GCAATGTTAGCAGCAAAAGTAAAATGGGCATTAACACCAGCTCCAAGAAGAGGTGAAATT
GTTAGATTAATTGGTCAAGCCATGAGAGAAAAAATTGAACCATTATCAAAATTAATTTCA
TTAGAAATGGGTAAAATTTACATTGAAGCTAAAGGTGAAGTACAAGAATTCATTGACGTA
TGCGATTATGCAACTGGTTTAAGTAGATCAATCAATGGTCAAGTGATGCCATCTGAACGT
CCAAATCACATTTTAATGGAAACCTGGXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence
tvglldkkhflikqxn*KMTTFNEYPFLAELGIKAENNDGVFNGKWGGAGEIIKCLNPTN
NKVIATVRGAAPEEYETCIQAMLAAKVKWALTPAPRRGEIVRLIGQAMREKIEPLSKLIS
LEMGKIYIEAKGEVQEFIDVCDYATGLSRSINGQVMPSERPNHILMET---


Translated Amino Acid sequence (All Frames)
Frame A:
tvglldkkhflikqxn*KMTTFNEYPFLAELGIKAENNDGVFNGKWGGAGEIIKCLNPTN
NKVIATVRGAAPEEYETCIQAMLAAKVKWALTPAPRRGEIVRLIGQAMREKIEPLSKLIS
LEMGKIYIEAKGEVQEFIDVCDYATGLSRSINGQVMPSERPNHILMET---


Frame B:
llaywtknif**nx*ikk*lpltnihswln*alklkimmessmengevlvkssnv*iqqi
ikllqllevlhqknmkhvfkqc*qqk*ngh*hqlqeevklld*lvkp*ekklnhyqn*fh
*kwvkftlklkvkyknsltyaimqlv*vdqsmvk*chlnvqitf*wkp---


Frame C:
cwptgqktfsnktxklkndyl*risilg*irh*s*k**wslqwkmgrcw*nhqmfksnk*
*sycnc*rcctrri*nmyssnvsskskmgintsskkr*nc*inwssherkn*tiikinfi
rng*nlh*s*r*strih*rmrlcnwfk*inqwssdai*tskshfngnl---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFC175 (VFC175Q) /CSM/VF/VFC1-D/VFC175Q.Seq.d/ 999 0.0
SFC444 (SFC444Q) /CSM/SF/SFC4-B/SFC444Q.Seq.d/ 999 0.0
SFA334 (SFA334Q) /CSM/SF/SFA3-B/SFA334Q.Seq.d/ 999 0.0
CFC708 (CFC708Q) /CSM/CF/CFC7-A/CFC708Q.Seq.d/ 999 0.0
CHC111 (CHC111Q) /CSM/CH/CHC1-A/CHC111Q.Seq.d/ 997 0.0
VFN466 (VFN466Q) /CSM/VF/VFN4-C/VFN466Q.Seq.d/ 993 0.0
CHE175 (CHE175Q) /CSM/CH/CHE1-D/CHE175Q.Seq.d/ 989 0.0
CHE460 (CHE460Q) /CSM/CH/CHE4-C/CHE460Q.Seq.d/ 987 0.0
SFH846 (SFH846Q) /CSM/SF/SFH8-B/SFH846Q.Seq.d/ 985 0.0
AFK209 (AFK209Q) /CSM/AF/AFK2-A/AFK209Q.Seq.d/ 977 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence. 595 0.0 2
AP002896|AP002896.1 Homo sapiens genomic DNA, chromosome 18q21, clone:RP11-749G1, WORKING DRAFT SEQUENCE, 38 unordered pieces. 40 0.16 5
BU774823|BU774823.1 SJEAVC03 SJE Schistosoma japonicum cDNA, mRNA sequence. 36 0.22 3
AL844507|AL844507.1 Plasmodium falciparum chromosome 8. 40 0.23 10
BD186615|BD186615.1 Nucleic acids isolated from neuroblastoma. 46 0.43 1
AP004170|AP004170.1 Mycoplasma penetrans genomic DNA, complete sequence, section 1/5. 38 0.59 9
AE010489|AE010489.1 Fusobacterium nucleatum subsp. nucleatum ATCC 25586, section 31 of 197 of the complete genome. 36 1.0 2
AC012629|AC012629.9 Homo sapiens chromosome 5 clone CTD-2154B17, complete sequence. 38 1.0 5
BU796678|BU796678.1 SJF2EEH06 SJF Schistosoma japonicum cDNA, mRNA sequence. 44 1.7 1
AC009851|AC009851.6 Homo sapiens chromosome 15 clone RP11-294O11 map 15q21, WORKING DRAFT SEQUENCE, 3 ordered pieces. 44 1.7 1
dna update 2003. 9.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P83401) RecName: Full=Putative aldehyde dehydrogenase family 7 ... 308 5e-83
BC044367_1(BC044367|pid:none) Danio rerio aldehyde dehydrogenase... 179 3e-44
BT044648_1(BT044648|pid:none) Salmo salar clone ssal-rgf-001-326... 174 2e-42
AY883858_1(AY883858|pid:none) Sterkiella histriomuscorum turgor ... 171 1e-41
EF678715_1(EF678715|pid:none) Picea sitchensis clone WS0295_M17 ... 171 1e-41
AY847462_1(AY847462|pid:none) Acanthopagrus schlegelii antiquiti... 170 2e-41
AK297365_1(AK297365|pid:none) Homo sapiens cDNA FLJ56008 complet... 165 5e-40
AK160117_1(AK160117|pid:none) Mus musculus osteoclast-like cell ... 165 5e-40
AF323586_1(AF323586|pid:none) Oryza sativa aldehyde dehydrogenas... 165 5e-40
(Q9DBF1) RecName: Full=Alpha-aminoadipic semialdehyde dehydrogen... 165 5e-40
protein update 2009. 6.17
PSORT

psg: 0.78 gvh: 0.31 alm: 0.46 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
28.0 %: nuclear
8.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for VFC175 is cyt

5' end seq. ID VFC175F
5' end seq.
>VFC175F.Seq
ACTGTTGGCCTACTGGACAAAAAACATTTTCTAATAAAACAGNTAAATTAAAAAATGACT
ACCTTTAACGAATATCCATTCTTGGCTGAATTAGGCATTAAAGCTGAAAATAATGATGGA
GTCTTCAATGGAAAATGGGGAGGTGCTGGTGAAATCATCAAATGTTTAAATCCAACAAAT
AATAAAGTTATTGCAACTGTTAGAGGTGCTGCACCAGAAGAATATGAAACATGTATTCAA
GCAATGTTAGCAGCAAAAGTAAAATGGGCATTAACACCAGCTCCAAGAAGAGGTGAAATT
GTTAGATTAATTGGTCAAGCCATGAGAGAAAAAATTGAACCATTATCAAAATTAATTTCA
TTAGAAATGGGTAAAATTTACATTGAAGCTAAAGGTGAAGTACAAGAATTCATTGACGTA
TGCGATTATGCAACTGGTTTAAGTAGATCAATCAATGGTCAAGTGATGCCATCTGAACGT
CCAAATCACATTTTAATGGAAACCTGG----------
Length of 5' end seq. 507
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -