VFC169
Library VF
(Link to library)
Clone ID VFC169
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16529-1
Original site URL
Representative seq. ID VFC169Z
(Link to Original site)
Representative DNA sequence
>VFC169 (VFC169Q) /CSM/VF/VFC1-C/VFC169Q.Seq.d/
XXXXXXXXXXAGCTTTTCAAATGGGCAGTTGATGTTAAAATTGTCAACAAAGTTAATTCA
ACTGCTGGTTNATATGAAATGACCATTACTCCATACCAAGTTNATAAGGTTGCTTGCAAA
GATGGTGATGACTTTGTTCAATTGCCAATTCCAAAACTTACTCCACCAGATTCTGAAATT
GTTAGCCATTTAACAGTTCGTCAAACACATACACCATATGACTATGTTGTAAATGGAAGT
GTTTACTTTAAATACTCCCCAACAACTGGCCAAGTTACAGTTATTAAAAAAGATGAGACA
TTCCCAAAGAATATGACTGTTACACAAGATGATAATACATNCTTTCATCTTTAACTTAAA
CNCTGAAAAATAAAACAATATGTTTTTTTTTCCGCTTAAGAAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence
---LFKWAVDVKIVNKVNSTAGXYEMTITPYQVXKVACKDGDDFVQLPIPKLTPPDSEIV
SHLTVRQTHTPYDYVVNGSVYFKYSPTTGQVTVIKKDETFPKNMTVTQDDNTXFHL*lkx
*kikqyvffsa*e


Translated Amino Acid sequence (All Frames)
Frame A:
---afqmgs*c*ncqqs*fncwxi*ndhysipsx*gclqrw**lcsiansktystrf*nc
*pfnsssntyti*lcckwkcll*ilpnnwpsysy*kr*dipkeydcytr**yxlsslt*t
lknkticfffrlrk


Frame B:
---LFKWAVDVKIVNKVNSTAGXYEMTITPYQVXKVACKDGDDFVQLPIPKLTPPDSEIV
SHLTVRQTHTPYDYVVNGSVYFKYSPTTGQVTVIKKDETFPKNMTVTQDDNTXFHL*lkx
*kikqyvffsa*e


Frame C:
---fsngqlmlklstkliqllvxmk*pllhtkxirllakmvmtlfncqfqnllhqilkll
ai*qfvkhihhmtml*mevftlntpqqlaklqllkkmrhsqri*llhkmiihxfifnlnx
ek*nnmfffplkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFC169 (VFC169Q) /CSM/VF/VFC1-C/VFC169Q.Seq.d/ 714 0.0
VSC180 (VSC180Q) /CSM/VS/VSC1-D/VSC180Q.Seq.d/ 688 0.0
VSB653 (VSB653Q) /CSM/VS/VSB6-C/VSB653Q.Seq.d/ 688 0.0
VFJ167 (VFJ167Q) /CSM/VF/VFJ1-C/VFJ167Q.Seq.d/ 688 0.0
VFH364 (VFH364Q) /CSM/VF/VFH3-C/VFH364Q.Seq.d/ 688 0.0
VFC423 (VFC423Q) /CSM/VF/VFC4-A/VFC423Q.Seq.d/ 688 0.0
SSM611 (SSM611Q) /CSM/SS/SSM6-A/SSM611Q.Seq.d/ 688 0.0
SSM310 (SSM310Q) /CSM/SS/SSM3-A/SSM310Q.Seq.d/ 688 0.0
SSK866 (SSK866Q) /CSM/SS/SSK8-C/SSK866Q.Seq.d/ 688 0.0
SSK613 (SSK613Q) /CSM/SS/SSK6-A/SSK613Q.Seq.d/ 688 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U49650|U49650.1 Dictyostelium discoideum calcium-dependent cell adhesion molecule-1 DdCAD-1 (cadA) mRNA, complete cds. 624 0.0 2
U20997|U20997.1 Dictyostelium discoideum putative 25 kDa protein mRNA, partial cds. 565 0.0 3
AF340153|AF340153.1 Dictyostelium discoideum calcium-dependent cell adhesion molecule-1 (cadA) gene, complete cds. 400 0.0 3
AC124492|AC124492.4 Mus musculus chromosome 12 clone RP23-454I23, complete sequence. 46 0.79 4
AP003082|AP003082.3 Homo sapiens genomic DNA, chromosome 11 clone:RP11-746C14, complete sequence. 40 3.0 4
AC074350|AC074350.5 Homo sapiens BAC clone RP11-742M10 from 2, complete sequence. 38 4.8 2
BX465200|BX465200.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEYP-24H12. 42 5.2 1
AC134465|AC134465.2 Mus musculus chromosome UNK clone RP23-461D17, WORKING DRAFT SEQUENCE, 21 unordered pieces. 42 5.2 1
BU135302|BU135302.1 603123580F1 CSEQCHL23 Gallus gallus cDNA clone ChEST89o19 5', mRNA sequence. 42 5.2 1
AF076973|AF076973.1 Dictyostelium discoideum putative adhesion molecule CAD2 (cad2) mRNA, complete cds. 42 5.2 1
dna update 2003. 9.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P54657) RecName: Full=Calcium-dependent cell adhesion molecule ... 221 5e-57
U20997_1(U20997|pid:none) Dictyostelium discoideum putative 25 k... 199 3e-50
AC116551_17(AC116551|pid:none) Dictyostelium discoideum chromoso... 86 3e-16
AJ575138_1(AJ575138|pid:none) Sordaria macrospora app gene for a... 33 3.1
AF160864_24(AF160864|pid:none) Tetrahymena pyriformis mitochondr... 33 4.1
CP000155_2836(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 32 5.3
(A4YIG5) RecName: Full=Cysteinyl-tRNA synthetase; EC=6.... 32 5.3
AM910994_684(AM910994|pid:none) Plasmodium knowlesi strain H chr... 32 7.0
AE014187_514(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 32 7.0
CU207366_264(CU207366|pid:none) Gramella forsetii KT0803 complet... 32 9.1
protein update 2009. 6.17
PSORT

psg: 0.67 gvh: 0.26 alm: 0.55 top: 0.53 tms: 0.00 mit: 0.24 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
28.0 %: cytoplasmic
20.0 %: mitochondrial
12.0 %: cytoskeletal

>> prediction for VFC169 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VFC169Z
3' end seq.
>VFC169Z.Seq
----------AGCTTTTCAAATGGGCAGTTGATGTTAAAATTGTCAACAAAGTTAATTCA
ACTGCTGGTTNATATGAAATGACCATTACTCCATACCAAGTTNATAAGGTTGCTTGCAAA
GATGGTGATGACTTTGTTCAATTGCCAATTCCAAAACTTACTCCACCAGATTCTGAAATT
GTTAGCCATTTAACAGTTCGTCAAACACATACACCATATGACTATGTTGTAAATGGAAGT
GTTTACTTTAAATACTCCCCAACAACTGGCCAAGTTACAGTTATTAAAAAAGATGAGACA
TTCCCAAAGAATATGACTGTTACACAAGATGATAATACATNCTTTCATCTTTAACTTAAA
CNCTGAAAAATAAAACAATATGTTTTTTTTTCCGCTTAAGAAAA
Length of 3' end seq. 394
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -