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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFC165
Library VF
(Link to library)
Clone ID VFC165
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13978-1
Original site URL
Representative seq. ID VFC165P
(Link to Original site)
Representative DNA sequence 
>VFC165 (VFC165Q) /CSM/VF/VFC1-C/VFC165Q.Seq.d/
ACTGTTGGCCTACTGGNACATATATATATATATATAGATAATGTCAGAAACACAAGAATT
TTGGTTAATTTCAGCTCCAAACCTTCCAGGTGCTGACATTTTTGACCAAGTCAATCAAAA
GACTGCCAAAGAAAATAGTTTATCTGAAAACAAAAAATTTAATACACCAGCATTAAGAGT
TGGTACTCTCAATTCATTGATTACCCTCAATGATGAATTACAAAAAATCGATACCATTGT
AGAATCTACAACCAAAAAGANTGCCAGACAATTAGTCGATTTAGTTGGAACCAAACCAGG
TAAAGATAAGAGTCTTTCAATCAATGGTCACACCATTCCACAATACCTTCAXXXXXXXXX
XAACTTTAAAACTAAAATCATTGAAAANAAATGGGTAGTAANAGATTTCAAATTANAAGA
TAATAAACCAACTCAAGAAAGATCAAAATTAACAGAAGATAAAAAGAATTGTAGAACATC
ATTAATTCGTTGGTGTAGATTAAATTTCCCANAGGCTTTTATGGCATGGGTTCACTTAAA
AGTTGTTANAGTATTCGTTGAATCTGTACTTANATTTGGTATTCCATTCAACTTCCAAGC
TATCCTCATGAAACCACAAAAAGGNGCCGATAAAAAGGTTCGTGATATACNTTTCGATCA
ATTCAAATATTTAGGTTCTGCTCATATCTCCTGGTAAGAATGAAACTGATGATTCCGAAA
AATTCNATCCATAT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
llaywxiyiyi*IMSETQEFWLISAPNLPGADIFDQVNQKTAKENSLSENKKFNTPALRV
GTLNSLITLNDELQKIDTIVESTTKKXARQLVDLVGTKPGKDKSLSINGHTIPQYL---

---NFKTKIIEXKWVVXDFKLXDNKPTQERSKLTEDKKNCRTSLIRWCRLNFPXAFMAWV
HLKVVXVFVESVLXFGIPFNFQAILMKPQKGADKKVRDIXFDQFKYLGSAHISW*e*n**
frkixsi
Translated Amino Acid sequence (All Frames) 
Frame A:
tvgllxhiyiyidnvrntrilvnfsskpsrc*hf*psqskdcqrk*fi*kqki*ytsiks
wysqfidypq**itknryhcriynqkxcqtisrfswnqtr*r*esfnqwshhstips---

---NFKTKIIEXKWVVXDFKLXDNKPTQERSKLTEDKKNCRTSLIRWCRLNFPXAFMAWV
HLKVVXVFVESVLXFGIPFNFQAILMKPQKGADKKVRDIXFDQFKYLGSAHISW*e*n**
frkixsi

Frame B:
llaywxiyiyi*IMSETQEFWLISAPNLPGADIFDQVNQKTAKENSLSENKKFNTPALRV
GTLNSLITLNDELQKIDTIVESTTKKXARQLVDLVGTKPGKDKSLSINGHTIPQYL---

---tlklkslkxng**xisnxkiinqlkkdqn*qkikrivehh*fvgvd*isxrllwhgf
t*kllxyslnlylxlvfhstsklss*nhkkxpikrfviyxsinsni*vllispgknetdd
sekfxpy

Frame C:
cwptgtyiyiyr*cqkhknfg*fqlqtfqvltfltksikrlpkkivylktknlihqh*el
vlsih*lpsmmnykksipl*nlqpkrxpdn*si*lepnqvkirvfqsmvtpfhntf---

---l*n*nh*kxmgsxrfqixr**tnsrkikinrr*kel*niinslv*ikfpxgfygmgs
lkscxsir*ictxiwysiqlpsyphettkrxr*kgs*ytfrsiqifrfcsyllvrmklmi
pknsih
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFC165 (VFC165Q) /CSM/VF/VFC1-C/VFC165Q.Seq.d/                       1265   0.0
VSA308 (VSA308Q) /CSM/VS/VSA3-A/VSA308Q.Seq.d/                        670   0.0
VFH290 (VFH290Q) /CSM/VF/VFH2-D/VFH290Q.Seq.d/                        670   0.0
SFE581 (SFE581Q) /CSM/SF/SFE5-D/SFE581Q.Seq.d/                        670   0.0
SFB812 (SFB812Q) /CSM/SF/SFB8-A/SFB812Q.Seq.d/                        670   0.0
VFL735 (VFL735Q) /CSM/VF/VFL7-B/VFL735Q.Seq.d/                        664   0.0
VFJ873 (VFJ873Q) /CSM/VF/VFJ8-D/VFJ873Q.Seq.d/                        664   0.0
SFF755 (SFF755Q) /CSM/SF/SFF7-C/SFF755Q.Seq.d/                        658   0.0
SFE554 (SFE554Q) /CSM/SF/SFE5-C/SFE554Q.Seq.d/                        658   0.0
VFB776 (VFB776Q) /CSM/VF/VFB7-D/VFB776Q.Seq.d/                        652   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

L41839|L41839.1 Dictyostelium discoideum H(+)-transporting ATPase chain C mRNA, complete cds.   611  0.0  3
AC141374|AC141374.2 Rattus norvegicus clone CH230-489J20, WORKING DRAFT SEQUENCE, 24 unordered pieces.    40  0.40  3
AC091162|AC091162.9 Homo sapiens chromosome 8, clone RP11-255E13, complete sequence.    46  0.62  1
AC073490|AC073490.5 Homo sapiens chromosome X clone RP11-255E13, WORKING DRAFT SEQUENCE, 4 unordered pieces.    46  0.62  1
AC125679|AC125679.3 Rattus norvegicus clone CH230-11B10, WORKING DRAFT SEQUENCE, 2 unordered pieces.    46  2.4  3
AC145410|AC145410.1 Bos taurus clone RP42-227G24, WORKING DRAFT SEQUENCE, 3 ordered pieces.    44  2.5  1
AC129983|AC129983.2 Mus musculus clone RP23-32O2, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces.    44  2.5  1
AC145443|AC145443.2 Bos taurus clone RP42-38D1, WORKING DRAFT SEQUENCE, 4 ordered pieces.    44  2.5  1
AC099718|AC099718.2 Mus musculus clone RP23-368E4, WORKING DRAFT SEQUENCE, 1 unordered piece.    44  2.5  1
AE007579|AE007579.1 Clostridium acetobutylicum ATCC824 section 67 of 356 of the complete genome.    44  2.5  1
dna update 2003. 9.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54648) RecName: Full=V-type proton ATPase subunit C;          ...   202   7e-51
(Q5XIY6) RecName: Full=V-type proton ATPase subunit C 1-B;      ...    82   2e-14
(Q6P4Y9) RecName: Full=V-type proton ATPase subunit C 1;        ...    79   1e-13
(Q7T385) RecName: Full=V-type proton ATPase subunit C 1-A;      ...    77   6e-13
(P21282) RecName: Full=V-type proton ATPase subunit C 1;        ...    77   7e-13
(Q9Z1G3) RecName: Full=V-type proton ATPase subunit C 1;        ...    75   2e-12
(Q5FVI6) RecName: Full=V-type proton ATPase subunit C 1;        ...    75   2e-12
(P21283) RecName: Full=V-type proton ATPase subunit C 1;        ...    75   3e-12
J05682_1(J05682|pid:none) Human subunit C of V-ATPase (vat C) mR...    75   3e-12
AK298617_1(AK298617|pid:none) Homo sapiens cDNA FLJ52191 complet...    75   3e-12
protein update 2009. 6.17
PSORT 

 psg: 0.75  gvh: 0.41  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for VFC165 is cyt
5' end seq. ID VFC165F
5' end seq. 
>VFC165F.Seq
ACTGTTGGCCTACTGGNACATATATATATATATATAGATAATGTCAGAAACACAAGAATT
TTGGTTAATTTCAGCTCCAAACCTTCCAGGTGCTGACATTTTTGACCAAGTCAATCAAAA
GACTGCCAAAGAAAATAGTTTATCTGAAAACAAAAAATTTAATACACCAGCATTAAGAGT
TGGTACTCTCAATTCATTGATTACCCTCAATGATGAATTACAAAAAATCGATACCATTGT
AGAATCTACAACCAAAAAGANTGCCAGACAATTAGTCGATTTAGTTGGAACCAAACCAGG
TAAAGATAAGAGTCTTTCAATCAATGGTCACACCATTCCACAATACCTTCA---------
-
Length of 5' end seq. 351
3' end seq. ID VFC165Z
3' end seq. 
>VFC165Z.Seq
----------AACTTTAAAACTAAAATCATTGAAAANAAATGGGTAGTAANAGATTTCAA
ATTANAAGATAATAAACCAACTCAAGAAAGATCAAAATTAACAGAAGATAAAAAGAATTG
TAGAACATCATTAATTCGTTGGTGTAGATTAAATTTCCCANAGGCTTTTATGGCATGGGT
TCACTTAAAAGTTGTTANAGTATTCGTTGAATCTGTACTTANATTTGGTATTCCATTCAA
CTTCCAAGCTATCCTCATGAAACCACAAAAAGGNGCCGATAAAAAGGTTCGTGATATACN
TTTCGATCAATTCAAATATTTAGGTTCTGCTCATATCTCCTGGTAAGAATGAAACTGATG
ATTCCGAAAAATTCNATCCATAT
Length of 3' end seq. 373
Connected seq. ID VFC165P
Connected seq. 
>VFC165P.Seq
ACTGTTGGCCTACTGGNACATATATATATATATATAGATAATGTCAGAAACACAAGAATT
TTGGTTAATTTCAGCTCCAAACCTTCCAGGTGCTGACATTTTTGACCAAGTCAATCAAAA
GACTGCCAAAGAAAATAGTTTATCTGAAAACAAAAAATTTAATACACCAGCATTAAGAGT
TGGTACTCTCAATTCATTGATTACCCTCAATGATGAATTACAAAAAATCGATACCATTGT
AGAATCTACAACCAAAAAGANTGCCAGACAATTAGTCGATTTAGTTGGAACCAAACCAGG
TAAAGATAAGAGTCTTTCAATCAATGGTCACACCATTCCACAATACCTTCA---------
-AACTTTAAAACTAAAATCATTGAAAANAAATGGGTAGTAANAGATTTCAAATTANAAGA
TAATAAACCAACTCAAGAAAGATCAAAATTAACAGAAGATAAAAAGAATTGTAGAACATC
ATTAATTCGTTGGTGTAGATTAAATTTCCCANAGGCTTTTATGGCATGGGTTCACTTAAA
AGTTGTTANAGTATTCGTTGAATCTGTACTTANATTTGGTATTCCATTCAACTTCCAAGC
TATCCTCATGAAACCACAAAAAGGNGCCGATAAAAAGGTTCGTGATATACNTTTCGATCA
ATTCAAATATTTAGGTTCTGCTCATATCTCCTGGTAAGAATGAAACTGATGATTCCGAAA
AATTCNATCCATAT
Length of connected seq. 724
Full length Seq ID -
Full length Seq. -
Length of full length seq. -