VFC154
Library VF
(Link to library)
Clone ID VFC154
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16363-1
Original site URL
Representative seq. ID VFC154Z
(Link to Original site)
Representative DNA sequence
>VFC154 (VFC154Q) /CSM/VF/VFC1-C/VFC154Q.Seq.d/
XXXXXXXXXXTTGCACAATCAATTGTAGATGGTAGTCAAGCTGATCCAGGAACATTCCCA
AGAAATATGTCTGGTCATACACCATTCTTTTTACCACCAGTCATTGTTGATGTAGCTCCA
AAATTCGACGATTTCGGTGATATCTATACTGATGTCTCTACAACTACACCATATTCAATC
AATCAAACTGTTACCGTCATTTTCTATGGTGCCAATCTTAGAAATAATTTCATGACTGAA
TCTTCTTTCCTCACTGTTGATCAATTACAATCTAATGGTCAATGGACTACAATTTTAAAT
GATGGTGATTGGGATACAAAATTATATTGGAAAATGCATGATTTAGGTTTTTCACTCATC
ACTGTTGATTGGACAATCTCTCCAATCACTCAACCAGGTACTTATAGAATAACTCATAGT
GGTTATGCTAAGAAAAATCCATTCTCTGATAATTTAACTTTTTATCAAGGTATTTCAAGT
AATTTTAATGTTCAATAAAAATTAAAATAAATAAAAAAAGGATTTTTTTTTATTAAATAA
ATTATTTNCAAAAAGCTAAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence
---AQSIVDGSQADPGTFPRNMSGHTPFFLPPVIVDVAPKFDDFGDIYTDVSTTTPYSIN
QTVTVIFYGANLRNNFMTESSFLTVDQLQSNGQWTTILNDGDWDTKLYWKMHDLGFSLIT
VDWTISPITQPGTYRITHSGYAKKNPFSDNLTFYQGISSNFNVQ*klk*ikkgfffik*i
ixkklk


Translated Amino Acid sequence (All Frames)
Frame A:
---ctincrw*ss*srnipkkyvwsytilfttshc*csskirrfr*yly*clynytifnq
sncyrhflwcqs*k*fhd*iffphc*siti*wsmdynfk*w*lgykiilena*frffthh
c*ldnlsnhstryl*nns*wlc*eksil**fnflsryfk*f*csikikinkkriffy*in
yxqkak


Frame B:
---AQSIVDGSQADPGTFPRNMSGHTPFFLPPVIVDVAPKFDDFGDIYTDVSTTTPYSIN
QTVTVIFYGANLRNNFMTESSFLTVDQLQSNGQWTTILNDGDWDTKLYWKMHDLGFSLIT
VDWTISPITQPGTYRITHSGYAKKNPFSDNLTFYQGISSNFNVQ*klk*ikkgfffik*i
ixkklk


Frame C:
---hnql*mvvkliqehsqeiclvihhsfyhqsllm*lqnstisvisilmslqlhhiqsi
kllpsfsmvpileiis*lnllssllinynlmvnglqf*mmvigiqnyigkcmi*vfhssl
ligqslqslnqvlie*livvmlrkihslii*lfikvfqvilmfnkn*nk*kkdffllnkl
fxks*


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFC154 (VFC154Q) /CSM/VF/VFC1-C/VFC154Q.Seq.d/ 1033 0.0
VHP543 (VHP543Q) /CSM/VH/VHP5-B/VHP543Q.Seq.d/ 1023 0.0
VHD412 (VHD412Q) /CSM/VH/VHD4-A/VHD412Q.Seq.d/ 1023 0.0
VHB761 (VHB761Q) /CSM/VH/VHB7-C/VHB761Q.Seq.d/ 1023 0.0
SFK788 (SFK788Q) /CSM/SF/SFK7-D/SFK788Q.Seq.d/ 1023 0.0
CFC356 (CFC356Q) /CSM/CF/CFC3-C/CFC356Q.Seq.d/ 1023 0.0
VHK193 (VHK193Q) /CSM/VH/VHK1-D/VHK193Q.Seq.d/ 1017 0.0
VSD672 (VSD672Q) /CSM/VS/VSD6-C/VSD672Q.Seq.d/ 1015 0.0
VSA546 (VSA546Q) /CSM/VS/VSA5-B/VSA546Q.Seq.d/ 1015 0.0
VHJ723 (VHJ723Q) /CSM/VH/VHJ7-A/VHJ723Q.Seq.d/ 1015 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U82513|U82513.1 Dictyostelium discoideum random slug cDNA25 protein (rsc25) mRNA, partial cds. 1015 0.0 1
AC105583|AC105583.4 Rattus norvegicus clone CH230-234N20, *** SEQUENCING IN PROGRESS ***, 1 ordered piece. 52 0.008 1
AP002852|AP002852.3 Homo sapiens genomic DNA, chromosome 8q23, clone: KB1980E6. 52 0.008 1
BX237383|BX237383.1 Danio rerio genomic clone DKEY-288F7, genomic survey sequence. 52 0.008 1
AL163193|AL163193.5 Homo sapiens chromosome 9 BAC RP11-73E6. 46 0.018 3
AX356452|AX356452.1 Sequence 86 from Patent WO0181622. 44 0.023 2
AX346493|AX346493.1 Sequence 1564 from Patent WO0200928. 44 0.023 2
AX279996|AX279996.1 Sequence 18 from Patent WO0177378. 44 0.023 2
AP003124|AP003124.3 Homo sapiens genomic DNA, chromosome 11 clone:RP11-447G14, complete sequence. 50 0.030 1
AC118892|AC118892.3 Rattus norvegicus clone CH230-449F20, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 50 0.030 1
dna update 2003. 9.10
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

U82513_1(U82513|pid:none) Dictyostelium discoideum random slug c... 340 2e-92
(Q55G11) RecName: Full=Neutral ceramidase B; Short=N-CD... 233 2e-60
CP000777_2353(CP000777|pid:none) Leptospira biflexa serovar Pato... 94 3e-18
AP009493_6570(AP009493|pid:none) Streptomyces griseus subsp. gri... 92 7e-18
(Q29C43) RecName: Full=Neutral ceramidase; Short=N-CDas... 91 3e-17
BC167651_1(BC167651|pid:none) Xenopus tropicalis hypothetical pr... 88 2e-16
AC022464_28(AC022464|pid:none) Genomic sequence for Arabidopsis ... 87 2e-16
BT004471_1(BT004471|pid:none) Drosophila melanogaster SD07768 fu... 87 4e-16
AB112076_1(AB112076|pid:none) Drosophila melanogaster fcd mRNA f... 87 4e-16
CU640366_194(CU640366|pid:none) Podospora anserina genomic DNA c... 86 5e-16
protein update 2009. 6.17
PSORT

psg: 0.75 gvh: 0.44 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.22 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
16.0 %: nuclear
12.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: mitochondrial
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for VFC154 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VFC154Z
3' end seq.
>VFC154Z.Seq
----------TTGCACAATCAATTGTAGATGGTAGTCAAGCTGATCCAGGAACATTCCCA
AGAAATATGTCTGGTCATACACCATTCTTTTTACCACCAGTCATTGTTGATGTAGCTCCA
AAATTCGACGATTTCGGTGATATCTATACTGATGTCTCTACAACTACACCATATTCAATC
AATCAAACTGTTACCGTCATTTTCTATGGTGCCAATCTTAGAAATAATTTCATGACTGAA
TCTTCTTTCCTCACTGTTGATCAATTACAATCTAATGGTCAATGGACTACAATTTTAAAT
GATGGTGATTGGGATACAAAATTATATTGGAAAATGCATGATTTAGGTTTTTCACTCATC
ACTGTTGATTGGACAATCTCTCCAATCACTCAACCAGGTACTTATAGAATAACTCATAGT
GGTTATGCTAAGAAAAATCCATTCTCTGATAATTTAACTTTTTATCAAGGTATTTCAAGT
AATTTTAATGTTCAATAAAAATTAAAATAAATAAAAAAAGGATTTTTTTTTATTAAATAA
ATTATTTNCAAAAAGCTAAAA
Length of 3' end seq. 551
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -