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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFC148
Library VF
(Link to library)
Clone ID VFC148
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U08747-1
Original site URL
Representative seq. ID VFC148P
(Link to Original site)
Representative DNA sequence 
>VFC148 (VFC148Q) /CSM/VF/VFC1-B/VFC148Q.Seq.d/
ATCACAAAAACAAATAAATCTAAATCATGATTTCCAATAAATTATTTAAAGCCAATAAAA
ATAGTAATAATAATAATAATAATAATAAAAATAAATGTGTTACACATAAAGATAAAACAA
TTAAATTTCTTTGTGTAGATTGTTCAAGTGACCCAGTTTGTAATTCTTGTGTTGTTTCAC
CAAAACATAGAGGTCATACATTTGATGAAGTTAAATTTGAAAATACAAATTCAATATTGG
AAGAATTTAAGAATCAACTTTTCCCAAAATTAAACGAATGTTACAACTCGGATCAAGTAT
TATTAAAACAATCCAATTTAGATTTTAAAAAGATTGGAGATGAACATGAAACAAATGTTA
AATTATTACAAXXXXXXXXXXATTAATGAAATCAATNTTTATCATTCATTCTAAATCTAT
CAATTNTGCTAAAAAACCAAAAAGAGTTCAATTTGGTGATAAAGTTTTCACCTATTATAA
TAAGGATGAAAATAATGGTATCATCTCAACTGAGATCACTCATTTAGCTATTCCATCAAA
TAGTAATATAAAAATTATTGAAGGTGGTGCCTATATACCAGCCAATGTAAAACACTGTTT
ATTATTAGATGGATTTAATCAACCTTTGGAACCAGGATTTTTGGCACCCACAATAACTCA
TCTTCATATTTGCACCATCAAAACACCTTTATTAGTTGGCTCAATTCCAAATGGTGTAAC
TGATTTATTTCTTCATGATGGATTCTCTGAACCAATTAGCCAAGATATCATTCCTCCCTC
TGTACAAAATCTTTATTTGTGTGATATAAAATTACCTTTTAAATCCCCAAATTCAATACC
ATCCACTGTTGCTACAATCATTAAAACTGATACCTTCAAACATTTTATAACACCAAAAGG
AAATAATCAACCCTATCAATCCCCAGTCTTAACTTTTTTAAATGATTAAAAATAAATAAA
ACAAGCAAACATATAAAAAATAAACAAACAAATAAAATATAAAATATAT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
hknk*i*IMISNKLFKANKNSNNNNNNNKNKCVTHKDKTIKFLCVDCSSDPVCNSCVVSP
KHRGHTFDEVKFENTNSILEEFKNQLFPKLNECYNSDQVLLKQSNLDFKKIGDEHETNVK
LLQ---

---LMKSXFIIHSKSINXAKKPKRVQFGDKVFTYYNKDENNGIISTEITHLAIPSNSNIK
IIEGGAYIPANVKHCLLLDGFNQPLEPGFLAPTITHLHICTIKTPLLVGSIPNGVTDLFL
HDGFSEPISQDIIPPSVQNLYLCDIKLPFKSPNSIPSTVATIIKTDTFKHFITPKGNNQP
YQSPVLTFLND*k*ikqani*kinkqikykiy
Translated Amino Acid sequence (All Frames) 
Frame A:
itktnksks*fpinylkpikiviiiiiiikinvlhikikqlnffv*ivqvtqfvilvlfh
qnievihlmklnlkiqiqywknlrinfsqn*tnvttrikyy*nnpi*ilkrlemnmkqml
nyy---

---ineinxyhsf*iyqxc*ktkkssiw**sfhll**g*k*wyhln*dhsfsysik**yk
ny*rwclytsqcktlfiirwi*stfgtrifgthnnsssylhhqntfiswlnskwcn*fis
s*wil*tn*pryhsslctkslfv*ykitf*ipkfntihccynh*n*ylqtfyntkrk*st
lsipslnffk*lkinktskhiknkqtnki*ni

Frame B:
sqkqinlnhdfq*ii*sq*k*********k*mcyt*r*nn*islcrlfk*psl*flccft
kt*rsyi**s*i*kykfnigri*estfpkikrmlqlgssiiktiqfrf*kdwr*t*nkc*
iit---

---LMKSXFIIHSKSINXAKKPKRVQFGDKVFTYYNKDENNGIISTEITHLAIPSNSNIK
IIEGGAYIPANVKHCLLLDGFNQPLEPGFLAPTITHLHICTIKTPLLVGSIPNGVTDLFL
HDGFSEPISQDIIPPSVQNLYLCDIKLPFKSPNSIPSTVATIIKTDTFKHFITPKGNNQP
YQSPVLTFLND*k*ikqani*kinkqikykiy

Frame C:
hknk*i*IMISNKLFKANKNSNNNNNNNKNKCVTHKDKTIKFLCVDCSSDPVCNSCVVSP
KHRGHTFDEVKFENTNSILEEFKNQLFPKLNECYNSDQVLLKQSNLDFKKIGDEHETNVK
LLQ---

---**nqxlsfilnlsixlknqkefnlvikfspiiirmkimvssqlrsli*lfhqivi*k
llkvvpiyqpm*ntvyy*mdlinlwnqdfwhpq*lififapskhly*laqfqmv*liyff
mmdslnqlakisflplykificvi*nyllnpqiqyhplllqslklipsnil*hqkeiinp
inpqs*lf*miknk*nkqtykk*tnk*niky
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFN223 (VFN223Q) /CSM/VF/VFN2-A/VFN223Q.Seq.d/                        981   0.0
VFC148 (VFC148Q) /CSM/VF/VFC1-B/VFC148Q.Seq.d/                        981   0.0
AFF694 (AFF694Q) /CSM/AF/AFF6-D/AFF694Q.Seq.d/                        805   0.0
CHC253 (CHC253Q) /CSM/CH/CHC2-C/CHC253Q.Seq.d/                         42   0.016
VFH809 (VFH809Q) /CSM/VF/VFH8-A/VFH809Q.Seq.d/                         38   0.25
VFD613 (VFD613Q) /CSM/VF/VFD6-A/VFD613Q.Seq.d/                         38   0.25
SSI813 (SSI813Q) /CSM/SS/SSI8-A/SSI813Q.Seq.d/                         38   0.25
CHG645 (CHG645Q) /CSM/CH/CHG6-B/CHG645Q.Seq.d/                         38   0.25
CHF359 (CHF359Q) /CSM/CH/CHF3-C/CHF359Q.Seq.d/                         38   0.25
CFJ602 (CFJ602Q) /CSM/CF/CFJ6-A/CFJ602Q.Seq.d/                         38   0.25
own update 2004. 7.29
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BX248085|BX248085.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-225E17.    46  2e-04  4
BX005005|BX005005.6 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    32  0.050  8
AC142337|AC142337.1 Pan troglodytes chromosome 7 clone RP43-39F23, complete sequence.    36  0.056  7
AL929357|AL929357.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 3/5.    42  0.16  8
AL844505|AL844505.1 Plasmodium falciparum chromosome  6.          34  0.37  12
AL031745|AL031745.8 Plasmodium falciparum DNA from MAL1P2.        32  0.38  14
BX571822|BX571822.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-5M24.    46  0.43  3
AB063521|AB063521.2 Wigglesworthia brevipalpis DNA, complete genome, section 1/2.    42  0.44  10
BH671959|BH671959.1 BOHVF14TF BO_2_3_KB Brassica oleracea genomic clone BOHVF14, DNA sequence.    30  0.61  3
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    32  0.66  13
dna update 2003. 9.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116032_2(AC116032|pid:none) Dictyostelium discoideum chromosom...    93   2e-17
AC115612_2(AC115612|pid:none) Dictyostelium discoideum chromosom...    88   4e-16
(Q54FS1) RecName: Full=FNIP repeat-containing protein DDB_G02906...    85   5e-15
(Q94481) RecName: Full=FNIP repeat-containing protein cigB;            84   8e-15
(Q54FS2) RecName: Full=FNIP repeat-containing protein DDB_G02906...    84   8e-15
U66528_1(U66528|pid:none) Dictyostelium discoideum CigB (cigB) m...    83   2e-14
AC115604_12(AC115604|pid:none) Dictyostelium discoideum chromoso...    82   2e-14
AC115680_16(AC115680|pid:none) Dictyostelium discoideum chromoso...    78   6e-13
AC117076_9(AC117076|pid:none) Dictyostelium discoideum chromosom...    77   9e-13
AC116982_8(AC116982|pid:none) Dictyostelium discoideum chromosom...    76   2e-12
protein update 2009. 6.17
PSORT 

 psg: 0.44  gvh: 0.56  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for VFC148 is nuc
5' end seq. ID VFC148F
5' end seq. 
>VFC148F.Seq
ATCACAAAAACAAATAAATCTAAATCATGATTTCCAATAAATTATTTAAAGCCAATAAAA
ATAGTAATAATAATAATAATAATAATAAAAATAAATGTGTTACACATAAAGATAAAACAA
TTAAATTTCTTTGTGTAGATTGTTCAAGTGACCCAGTTTGTAATTCTTGTGTTGTTTCAC
CAAAACATAGAGGTCATACATTTGATGAAGTTAAATTTGAAAATACAAATTCAATATTGG
AAGAATTTAAGAATCAACTTTTCCCAAAATTAAACGAATGTTACAACTCGGATCAAGTAT
TATTAAAACAATCCAATTTAGATTTTAAAAAGATTGGAGATGAACATGAAACAAATGTTA
AATTATTACAA----------
Length of 5' end seq. 371
3' end seq. ID VFC148Z
3' end seq. 
>VFC148Z.Seq
----------ATTAATGAAATCAATNTTTATCATTCATTCTAAATCTATCAATTNTGCTA
AAAAACCAAAAAGAGTTCAATTTGGTGATAAAGTTTTCACCTATTATAATAAGGATGAAA
ATAATGGTATCATCTCAACTGAGATCACTCATTTAGCTATTCCATCAAATAGTAATATAA
AAATTATTGAAGGTGGTGCCTATATACCAGCCAATGTAAAACACTGTTTATTATTAGATG
GATTTAATCAACCTTTGGAACCAGGATTTTTGGCACCCACAATAACTCATCTTCATATTT
GCACCATCAAAACACCTTTATTAGTTGGCTCAATTCCAAATGGTGTAACTGATTTATTTC
TTCATGATGGATTCTCTGAACCAATTAGCCAAGATATCATTCCTCCCTCTGTACAAAATC
TTTATTTGTGTGATATAAAATTACCTTTTAAATCCCCAAATTCAATACCATCCACTGTTG
CTACAATCATTAAAACTGATACCTTCAAACATTTTATAACACCAAAAGGAAATAATCAAC
CCTATCAATCCCCAGTCTTAACTTTTTTAAATGATTAAAAATAAATAAAACAAGCAAACA
TATAAAAAATAAACAAACAAATAAAATATAAAATATAT
Length of 3' end seq. 628
Connected seq. ID VFC148P
Connected seq. 
>VFC148P.Seq
ATCACAAAAACAAATAAATCTAAATCATGATTTCCAATAAATTATTTAAAGCCAATAAAA
ATAGTAATAATAATAATAATAATAATAAAAATAAATGTGTTACACATAAAGATAAAACAA
TTAAATTTCTTTGTGTAGATTGTTCAAGTGACCCAGTTTGTAATTCTTGTGTTGTTTCAC
CAAAACATAGAGGTCATACATTTGATGAAGTTAAATTTGAAAATACAAATTCAATATTGG
AAGAATTTAAGAATCAACTTTTCCCAAAATTAAACGAATGTTACAACTCGGATCAAGTAT
TATTAAAACAATCCAATTTAGATTTTAAAAAGATTGGAGATGAACATGAAACAAATGTTA
AATTATTACAA----------ATTAATGAAATCAATNTTTATCATTCATTCTAAATCTAT
CAATTNTGCTAAAAAACCAAAAAGAGTTCAATTTGGTGATAAAGTTTTCACCTATTATAA
TAAGGATGAAAATAATGGTATCATCTCAACTGAGATCACTCATTTAGCTATTCCATCAAA
TAGTAATATAAAAATTATTGAAGGTGGTGCCTATATACCAGCCAATGTAAAACACTGTTT
ATTATTAGATGGATTTAATCAACCTTTGGAACCAGGATTTTTGGCACCCACAATAACTCA
TCTTCATATTTGCACCATCAAAACACCTTTATTAGTTGGCTCAATTCCAAATGGTGTAAC
TGATTTATTTCTTCATGATGGATTCTCTGAACCAATTAGCCAAGATATCATTCCTCCCTC
TGTACAAAATCTTTATTTGTGTGATATAAAATTACCTTTTAAATCCCCAAATTCAATACC
ATCCACTGTTGCTACAATCATTAAAACTGATACCTTCAAACATTTTATAACACCAAAAGG
AAATAATCAACCCTATCAATCCCCAGTCTTAACTTTTTTAAATGATTAAAAATAAATAAA
ACAAGCAAACATATAAAAAATAAACAAACAAATAAAATATAAAATATAT
Length of connected seq. 999
Full length Seq ID -
Full length Seq. -
Length of full length seq. -