VFC124
Library VF
(Link to library)
Clone ID VFC124
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12017-1
Original site URL
Representative seq. ID VFC124Z
(Link to Original site)
Representative DNA sequence
>VFC124 (VFC124Q) /CSM/VF/VFC1-A/VFC124Q.Seq.d/
XXXXXXXXXXTCGATACATTGGATAAAGACTCATACATTGGTATTGATAGTGGTATCATT
GGTGGCTCAGTTGATTTGATCGCCGGTAGAATTCATCCACAATCCATCGCTACTATCAAT
GGTGATTTAATTATGACAAGTGGTGCCGTTTTGNATATGGATCAAACCTCTGAACAATTC
GCTGTTGCTGGTAACTTGGAAATGGATGCTGAATCCACCATTTTCATCGCAGAGACACTC
TCTACCGATGCTGGCGCTCTTATCACTGTCGACGGTAATTTAGTACTCAATGGTACCCTT
ATCATGGATATCACCGATACCAATCCAAGTGATGGTGATTCCTATAAAATCATCTCATGT
GCTGGTAGCACTCTTGGTACTTTCTCAACCATCGTTCCACTTACAAATGGTCAAGCCACC
ACTTTAGATTACTCCTGTTTCCCGTCTCTGATGATGGTATTGTCTCAATTAAATTTAATT
CAAAAGAACAATCTCATAAGAAATTA
sequence update 2001. 6. 1
Translated Amino Acid sequence
---DTLDKDSYIGIDSGIIGGSVDLIAGRIHPQSIATINGDLIMTSGAVLXMDQTSEQFA
VAGNLEMDAESTIFIAETLSTDAGALITVDGNLVLNGTLIMDITDTNPSDGDSYKIISCA
GSTLGTFSTIVPLTNGQATTLDYSCFPSLMMVLSQLNLIQKNNLIRN


Translated Amino Acid sequence (All Frames)
Frame A:
---ryig*rlihwy**wyhwwls*fdrr*nsstihryyqw*fnydkwcrfxygsnl*tir
ccw*lgngc*ihhfhrrdtlyrcwrsyhcrr*fstqwypyhgyhryqsk*w*fl*nhlmc
w*hswyflnhrstykwsshhfrlllfpvsddgivsikfnskeqshkkl


Frame B:
---DTLDKDSYIGIDSGIIGGSVDLIAGRIHPQSIATINGDLIMTSGAVLXMDQTSEQFA
VAGNLEMDAESTIFIAETLSTDAGALITVDGNLVLNGTLIMDITDTNPSDGDSYKIISCA
GSTLGTFSTIVPLTNGQATTLDYSCFPSLMMVLSQLNLIQKNNLIRN


Frame C:
---ihwikthtlvlivvslvaqli*spvefihnpsllsmvi*l*qvvpfxiwikplnnsl
llvtwkwmlnppfssqrhslpmlallslstvi*ysmvplswispipiqvmvipiksshvl
vallvlsqpsfhlqmvkppl*itpvsrl**wycln*i*fkrtis*ei


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFC124 (VFC124Q) /CSM/VF/VFC1-A/VFC124Q.Seq.d/ 977 0.0
VFB437 (VFB437Q) /CSM/VF/VFB4-B/VFB437Q.Seq.d/ 946 0.0
VFB272 (VFB272Q) /CSM/VF/VFB2-C/VFB272Q.Seq.d/ 946 0.0
SLH443 (SLH443Q) /CSM/SL/SLH4-B/SLH443Q.Seq.d/ 946 0.0
SFK852 (SFK852Q) /CSM/SF/SFK8-C/SFK852Q.Seq.d/ 946 0.0
VHG735 (VHG735Q) /CSM/VH/VHG7-B/VHG735Q.Seq.d/ 938 0.0
VHA373 (VHA373Q) /CSM/VH/VHA3-D/VHA373Q.Seq.d/ 932 0.0
VHA473 (VHA473Q) /CSM/VH/VHA4-D/VHA473Q.Seq.d/ 926 0.0
SFD278 (SFD278Q) /CSM/SF/SFD2-D/SFD278Q.Seq.d/ 896 0.0
VHQ439 (VHQ439Q) /CSM/VH/VHQ4-B/VHQ439Q.Seq.d/ 892 0.0

own update 2002.12.15
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 835 0.0 2
U67089|U67089.1 Dictyostelium discoideum unknown protein (DG1008) gene, partial cds. 167 2e-37 1
AC145448|AC145448.2 Dasypus novemcinctus clone VMRC5-267J9, WORKING DRAFT SEQUENCE, 2 ordered pieces. 44 1.7 1
AC106790|AC106790.3 Homo sapiens chromosome 5 clone RP11-376E20, complete sequence. 44 5.0 3
BE658964|BE658964.1 GM700008A10B4 Gm-r1070 Glycine max cDNA clone Gm-r1070-2743 3', mRNA sequence. 42 6.6 1
BW298763|BW298763.1 Ciona intestinalis cDNA, clone:cinc003k24, 5' end, single read. 42 6.6 1
BI702190|BI702190.1 sag43c08.y1 Gm-c1081 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1081-1647 5' similar to TR:Q9SHK0 Q9SHK0 F12K11.10. ;, mRNA sequence. 42 6.6 1
BW254508|BW254508.1 Ciona intestinalis cDNA, clone:citb099o15, 5' end, single read. 42 6.6 1
AW285582|AW285582.2 LG1_245_F09.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA sequence. 42 6.6 1
CG317487|CG317487.1 OG1DE05TV ZM_0.7_1.5_KB Zea mays genomic clone ZMMBMa0735B09, genomic survey sequence. 42 6.6 1
dna update 2003. 9.10
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP001032_262(CP001032|pid:none) Opitutus terrae PB90-1, complete... 44 0.003
AM746676_1187(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 43 0.005
AE014291_1951(AE014291|pid:none) Brucella suis 1330 chromosome I... 39 0.054
CP000887_1806(CP000887|pid:none) Brucella abortus S19 chromosome... 39 0.070
AB3528(AB3528) extracellular serine proteinase (EC 3.4.21.-) [im... 37 0.20
CP000709_924(CP000709|pid:none) Brucella ovis ATCC 25840 chromos... 37 0.20
DQ249185_1(DQ249185|pid:none) Pseudomonas chlororaphis PspB (psp... 37 0.35
CU914168_2936(CU914168|pid:none) Ralstonia solanacearum strain I... 36 0.46
CP000254_1400(CP000254|pid:none) Methanospirillum hungatei JF-1,... 35 0.78
CP000076_3156(CP000076|pid:none) Pseudomonas fluorescens Pf-5, c... 35 0.78
protein update 2009. 6.17
PSORT

psg: 0.75 gvh: 0.43 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.17 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: cytoplasmic
28.0 %: nuclear
8.0 %: vesicles of secretory system
4.0 %: cytoskeletal

>> prediction for VFC124 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VFC124Z
3' end seq.
>VFC124Z.Seq
----------TCGATACATTGGATAAAGACTCATACATTGGTATTGATAGTGGTATCATT
GGTGGCTCAGTTGATTTGATCGCCGGTAGAATTCATCCACAATCCATCGCTACTATCAAT
GGTGATTTAATTATGACAAGTGGTGCCGTTTTGNATATGGATCAAACCTCTGAACAATTC
GCTGTTGCTGGTAACTTGGAAATGGATGCTGAATCCACCATTTTCATCGCAGAGACACTC
TCTACCGATGCTGGCGCTCTTATCACTGTCGACGGTAATTTAGTACTCAATGGTACCCTT
ATCATGGATATCACCGATACCAATCCAAGTGATGGTGATTCCTATAAAATCATCTCATGT
GCTGGTAGCACTCTTGGTACTTTCTCAACCATCGTTCCACTTACAAATGGTCAAGCCACC
ACTTTAGATTACTCCTGTTTCCCGTCTCTGATGATGGTATTGTCTCAATTAAATTTAATT
CAAAAGAACAATCTCATAAGAAATTA
Length of 3' end seq. 496
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -