VFC121
Library VF
(Link to library)
Clone ID VFC121
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14962-1
Original site URL
Representative seq. ID VFC121P
(Link to Original site)
Representative DNA sequence
>VFC121 (VFC121Q) /CSM/VF/VFC1-A/VFC121Q.Seq.d/
ACTGTTGGCCTACTGGNAAAAAAAAATTAAATAGAAAATGAATAAATTTGTTAGAGTTGG
TCAATATGTTAAATCAAATTATCCACTTTATTTAGGTAGTAAACCAATTACAAAAACTTC
ATCAAGTTTAGAAGTTATTGATAAATTTACCAATGAAATTGCAAGTAAAATACCAATGGC
AGATAAAGAAATGATTGAACAATCAATTGTTATTGCACAGAAAGCATGTGAACCAATGAG
ACAATTATCAGCAGCAACCAAGAAACAAATTCTTTTAAATATTGCTAATGATCTTGAAAA
GAGAGCAGATGAATTTGCTAAAGCAATAGTTGTTGAAGTTGGTAAACCATTGGTTGATGC
AAATGCAGAAGTTGGTAGAGCAATCGATACATTTACATGTGXXXXXXXXXXACGTATGGG
TGATCCAATGGATCCAACCACTTTTGTTGGTCCAATGATCACTGAACATGATGCTAAACG
TGTCGAATCTTGGGTTAATAATGCTGTCTCCAAAGGTGCAAATGTTTTAGTTGGTGGTAA
ACGTAATGATCATTTCATGCAACCAACAATCTTGGAGAATTTACCATTGGATACTGAAAT
CTCTTGTAAAGAAGTATTTGGTCCTGTATTCTTTATTGAAAGATTCAATGATTTCAAACA
AGTTGTTCAACGTGTAAACTCTTCAGAATTTGGTTTACAAGCTGGTGTCTTTACTGATGA
TATTCATAAAGCCTACTACGCCTTTAACAATATAGAAGCTGGTGCTGTCGTTATCAATGA
TATCCCTTCAGTTCGTGTTGATGCTCAACCATACGGTGGTGTTAAAGAATCTGGTTTCGG
TCGTGAAGGTATCAGACATACAATCGAAGAATATACTGAATTAAAATTAATGATTTAAAA
GNATATGGTAA
sequence update 2001. 6. 1
Translated Amino Acid sequence
llaywxkkik*KMNKFVRVGQYVKSNYPLYLGSKPITKTSSSLEVIDKFTNEIASKIPMA
DKEMIEQSIVIAQKACEPMRQLSAATKKQILLNIANDLEKRADEFAKAIVVEVGKPLVDA
NAEVGRAIDTFTC---

---RMGDPMDPTTFVGPMITEHDAKRVESWVNNAVSKGANVLVGGKRNDHFMQPTILENL
PLDTEISCKEVFGPVFFIERFNDFKQVVQRVNSSEFGLQAGVFTDDIHKAYYAFNNIEAG
AVVINDIPSVRVDAQPYGGVKESGFGREGIRHTIEEYTELKLMI*kxmv


Translated Amino Acid sequence (All Frames)
Frame A:
tvgllxkkn*iene*ic*swsic*iklstlfr**tnyknfikfrsy**iyq*nck*ntng
r*rnd*tincyctesm*tnetiissnqetnsfkyc**s*kesr*ic*snsc*sw*tig*c
kcrsw*snryiym---

---tyg*sngsnhfcwsndh*t*c*tcrilg**cclqrckcfsww*t**sfhatnnlgef
tigy*nll*rsiwscily*kiq*fqtscstcklfriwftswcly**ys*sllrl*qyrsw
ccryq*ypfssc*cstirwc*riwfrs*ryqtynrriy*ikindlkxyg

Frame B:
llaywxkkik*KMNKFVRVGQYVKSNYPLYLGSKPITKTSSSLEVIDKFTNEIASKIPMA
DKEMIEQSIVIAQKACEPMRQLSAATKKQILLNIANDLEKRADEFAKAIVVEVGKPLVDA
NAEVGRAIDTFTC---

---RMGDPMDPTTFVGPMITEHDAKRVESWVNNAVSKGANVLVGGKRNDHFMQPTILENL
PLDTEISCKEVFGPVFFIERFNDFKQVVQRVNSSEFGLQAGVFTDDIHKAYYAFNNIEAG
AVVINDIPSVRVDAQPYGGVKESGFGREGIRHTIEEYTELKLMI*kxmv

Frame C:
cwptgkkklnrk*inllelvnmlnqiihfi*vvnqlqklhqv*kllinlpmklqvkyqwq
ikk*lnnqlllhrkhvnq*dnyqqqprnkff*illmilkreqmnllkq*llklvnhwlmq
mqklveqsihlhv---

---vwviqwiqplllvq*slnmmlnvsnlglimlspkvqmf*lvvnvmiiscnqqswriy
hwilkslvkkylvlysllkdsmisnklfnv*tlqnlvyklvsllmifikpttplti*klv
lslsmislqfvlmlnhtvvlknlvsvvkvsdiqskniln*n**fkxiw*

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFC121 (VFC121Q) /CSM/VF/VFC1-A/VFC121Q.Seq.d/ 1689 0.0
SLE735 (SLE735Q) /CSM/SL/SLE7-B/SLE735Q.Seq.d/ 961 0.0
SLC345 (SLC345Q) /CSM/SL/SLC3-B/SLC345Q.Seq.d/ 961 0.0
AFO775 (AFO775Q) /CSM/AF/AFO7-D/AFO775Q.Seq.d/ 938 0.0
AFN616 (AFN616Q) /CSM/AF/AFN6-A/AFN616Q.Seq.d/ 938 0.0
VFG770 (VFG770Q) /CSM/VF/VFG7-C/VFG770Q.Seq.d/ 936 0.0
SFD769 (SFD769Q) /CSM/SF/SFD7-C/SFD769Q.Seq.d/ 934 0.0
SFC363 (SFC363Q) /CSM/SF/SFC3-C/SFC363Q.Seq.d/ 934 0.0
AFO285 (AFO285Q) /CSM/AF/AFO2-D/AFO285Q.Seq.d/ 934 0.0
AFF163 (AFF163Q) /CSM/AF/AFF1-C/AFF163Q.Seq.d/ 934 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF267218|AF267218.1 Candidatus Carsonella ruddii natural-host Panisopelma fulvescens ATP synthase alpha subunit (atpA) gene, partial cds; ATP synthase gamma subunit (atpG) gene, complete cds; and ATP synthase beta subunit (atpD) gene, partial cds. 30 0.76 4
AC096177|AC096177.6 Rattus norvegicus clone CH230-11D4, *** SEQUENCING IN PROGRESS ***, 1 ordered piece. 46 0.78 1
AE010021|AE010021.1 Streptococcus pyogenes strain MGAS8232, section 69 of 173 of the complete genome. 36 0.92 3
AJ414158|AJ414158.1 Yersinia pestis strain CO92 complete genome; segment 18/20. 42 0.98 2
AC145263|AC145263.2 Zea mays clone XX-41A1, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces. 36 1.7 5
AF267220|AF267220.1 Candidatus Carsonella ruddii natural-host Panisopelma sp. ATP synthase alpha subunit (atpA) gene, partial cds; ATP synthase gamma subunit (atpG) gene, complete cds; and ATP synthase beta subunit (atpD) gene, partial cds. 30 2.5 4
AC067794|AC067794.5 Homo sapiens chromosome 11, clone RP11-558L11, complete sequence. 44 3.0 2
AC025241|AC025241.3 Homo sapiens chromosome 1 clone RP11-498H23, WORKING DRAFT SEQUENCE, 44 unordered pieces. 44 3.1 1
BX549837|BX549837.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected midgut library, clone Tse10d07_p1c. 44 3.1 1
BX564737|BX564737.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected midgut library, clone Tse73d07_p1c. 44 3.1 1
dna update 2003. 9.10
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP000011_204(CP000011|pid:none) Burkholderia mallei ATCC 23344 c... 185 2e-45
BX571966_1913(BX571966|pid:none) Burkholderia pseudomallei strai... 185 2e-45
CP000152_2305(CP000152|pid:none) Burkholderia sp. 383 chromosome... 184 5e-45
CP001052_1211(CP001052|pid:none) Burkholderia phytofirmans PsJN ... 184 5e-45
CP000959_551(CP000959|pid:none) Burkholderia cenocepacia MC0-3 c... 182 1e-44
AM747721_823(AM747721|pid:none) Burkholderia cenocepacia J2315 c... 182 1e-44
CP000388_3816(CP000388|pid:none) Pseudoalteromonas atlantica T6c... 182 1e-44
CP000270_1148(CP000270|pid:none) Burkholderia xenovorans LB400 c... 182 1e-44
CP000441_2283(CP000441|pid:none) Burkholderia ambifaria AMMD chr... 181 2e-44
AP009386_370(AP009386|pid:none) Burkholderia multivorans ATCC 17... 180 5e-44
protein update 2009. 6.17
PSORT

psg: 0.63 gvh: 0.33 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.38 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: mitochondrial
24.0 %: cytoplasmic
12.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: extracellular, including cell wall
4.0 %: plasma membrane
4.0 %: peroxisomal

>> prediction for VFC121 is mit

5' end seq. ID VFC121F
5' end seq.
>VFC121F.Seq
ACTGTTGGCCTACTGGNAAAAAAAAATTAAATAGAAAATGAATAAATTTGTTAGAGTTGG
TCAATATGTTAAATCAAATTATCCACTTTATTTAGGTAGTAAACCAATTACAAAAACTTC
ATCAAGTTTAGAAGTTATTGATAAATTTACCAATGAAATTGCAAGTAAAATACCAATGGC
AGATAAAGAAATGATTGAACAATCAATTGTTATTGCACAGAAAGCATGTGAACCAATGAG
ACAATTATCAGCAGCAACCAAGAAACAAATTCTTTTAAATATTGCTAATGATCTTGAAAA
GAGAGCAGATGAATTTGCTAAAGCAATAGTTGTTGAAGTTGGTAAACCATTGGTTGATGC
AAATGCAGAAGTTGGTAGAGCAATCGATACATTTACATGTG----------
Length of 5' end seq. 401
3' end seq. ID VFC121Z
3' end seq.
>VFC121Z.Seq
----------ACGTATGGGTGATCCAATGGATCCAACCACTTTTGTTGGTCCAATGATCA
CTGAACATGATGCTAAACGTGTCGAATCTTGGGTTAATAATGCTGTCTCCAAAGGTGCAA
ATGTTTTAGTTGGTGGTAAACGTAATGATCATTTCATGCAACCAACAATCTTGGAGAATT
TACCATTGGATACTGAAATCTCTTGTAAAGAAGTATTTGGTCCTGTATTCTTTATTGAAA
GATTCAATGATTTCAAACAAGTTGTTCAACGTGTAAACTCTTCAGAATTTGGTTTACAAG
CTGGTGTCTTTACTGATGATATTCATAAAGCCTACTACGCCTTTAACAATATAGAAGCTG
GTGCTGTCGTTATCAATGATATCCCTTCAGTTCGTGTTGATGCTCAACCATACGGTGGTG
TTAAAGAATCTGGTTTCGGTCGTGAAGGTATCAGACATACAATCGAAGAATATACTGAAT
TAAAATTAATGATTTAAAAGNATATGGTAA
Length of 3' end seq. 500
Connected seq. ID VFC121P
Connected seq.
>VFC121P.Seq
ACTGTTGGCCTACTGGNAAAAAAAAATTAAATAGAAAATGAATAAATTTGTTAGAGTTGG
TCAATATGTTAAATCAAATTATCCACTTTATTTAGGTAGTAAACCAATTACAAAAACTTC
ATCAAGTTTAGAAGTTATTGATAAATTTACCAATGAAATTGCAAGTAAAATACCAATGGC
AGATAAAGAAATGATTGAACAATCAATTGTTATTGCACAGAAAGCATGTGAACCAATGAG
ACAATTATCAGCAGCAACCAAGAAACAAATTCTTTTAAATATTGCTAATGATCTTGAAAA
GAGAGCAGATGAATTTGCTAAAGCAATAGTTGTTGAAGTTGGTAAACCATTGGTTGATGC
AAATGCAGAAGTTGGTAGAGCAATCGATACATTTACATGTG----------ACGTATGGG
TGATCCAATGGATCCAACCACTTTTGTTGGTCCAATGATCACTGAACATGATGCTAAACG
TGTCGAATCTTGGGTTAATAATGCTGTCTCCAAAGGTGCAAATGTTTTAGTTGGTGGTAA
ACGTAATGATCATTTCATGCAACCAACAATCTTGGAGAATTTACCATTGGATACTGAAAT
CTCTTGTAAAGAAGTATTTGGTCCTGTATTCTTTATTGAAAGATTCAATGATTTCAAACA
AGTTGTTCAACGTGTAAACTCTTCAGAATTTGGTTTACAAGCTGGTGTCTTTACTGATGA
TATTCATAAAGCCTACTACGCCTTTAACAATATAGAAGCTGGTGCTGTCGTTATCAATGA
TATCCCTTCAGTTCGTGTTGATGCTCAACCATACGGTGGTGTTAAAGAATCTGGTTTCGG
TCGTGAAGGTATCAGACATACAATCGAAGAATATACTGAATTAAAATTAATGATTTAAAA
GNATATGGTAA
Length of connected seq. 901
Full length Seq ID -
Full length Seq. -
Length of full length seq. -