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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFC105
Library VF
(Link to library)
Clone ID VFC105
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16561-1
Original site URL
Representative seq. ID VFC105Z
(Link to Original site)
Representative DNA sequence 
>VFC105 (VFC105Q) /CSM/VF/VFC1-A/VFC105Q.Seq.d/
XXXXXXXXXXTTNCCNNNNAANTTNAANGGTANNNNNACNTTNAAATTTAAAANAANTTC
NANNNAAANAANGTTTTNCNNCANNTCANNANNGTTTNNTTTTNNNTGGTAANCANTNAN
AANATGGTNGNNNNTCTNTNNTNCAATATCCAAAAANAATNNNCTNTCCACTTGGTCCTC
ANATTAANAGGTGGTATGCAAATCNTTGTNAAAACATTAACTGGTAANACCATCNCTCTT
NAAGTTNAGGGNTCANATAATATTNAAAATGTTAAANCAAANATTCAAGACAAANAAGGT
ATCCCACCAGACCANCAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACT
CTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTCCTCAGATTAAGAGGT
GGTATGCAAATTTTTGTCAAAACCCTCACTGGTAAGACTATTACACTCGAAGTTGAAGGT
TCTGATAACATTGAGAATGTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGAT
CAACAACGTCTCATTTTCGCCGGTAAACAATTGGAGGATGGTCGTACTCTCTCTGATTAC
AACATTCAAAAGGAATCCACTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATT
TTTGTAAAAACTCTCACTGGTAAAACCATTACACTCGAAGTTGAAGGTAGTGACAACATT
GAGAATGTAAAAACAAAAATTCAAGACAAAGAAGGTATCCCA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
---xxxxxxxxxxxi*XXFXXXXVXXXXXXVXFXXVXXXXMVXXLXXNIQKXXXXHLVLX
LXGGMQIXVKTLTGXTIXLXVXGSXNIXNVKXXIQDKXGIPPDXQRLIFAGKQLEDGRTL
SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEGSDNIENVKAKIQDKEGIPPDQ
QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEGSDNIE
NVKTKIQDKEGIP
Translated Amino Acid sequence (All Frames) 
Frame A:
---xxxxxxvxxxxnlkxxxxkxxfxxxxxxxxxxgxxxxxgxxsxxqypkxxxxplgpx
ixrwyanxcxninw*xhxsxsxgxx*yxkc*xkxsrqxryptrpxkinfrw*tirrwsys
l*lqhskgihspfspqikrwyanfcqnphw*dyytrs*rf**h*ec*sqnprqrrystrs
ttshfrr*tiggwsysl*lqhskgihspfssqikrwyanfcknshw*nhytrs*r**qh*
ecknknsrqrryp


Frame B:
---xxxxxxxxxxxi*XXFXXXXVXXXXXXVXFXXVXXXXMVXXLXXNIQKXXXXHLVLX
LXGGMQIXVKTLTGXTIXLXVXGSXNIXNVKXXIQDKXGIPPDXQRLIFAGKQLEDGRTL
SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEGSDNIENVKAKIQDKEGIPPDQ
QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEGSDNIE
NVKTKIQDKEGIP


Frame C:
---pxxxxgxxtxkfkxxsxxxxfxxxsxxfxfxw*xxxxwxxxxxxiskxnxlstwssx
*xvvckslxkh*lvxpslxkxrxxiixkmlxqxfktxkvshqtxkd*fslvnn*kmvvls
littfkrnplsi*ssd*evvckflskpslvrllhsklkvlitlrmlkpksktkkvfhqin
nvsfspvnnwrmvvlslittfkrnplsi*fsd*evvckfl*klslvkplhsklkvvttlr
m*kqkfktkkvs
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFL296 (VFL296Q) /CSM/VF/VFL2-D/VFL296Q.Seq.d/                       1108   0.0
VFC105 (VFC105Q) /CSM/VF/VFC1-A/VFC105Q.Seq.d/                       1108   0.0
SFJ684 (SFJ684Q) /CSM/SF/SFJ6-D/SFJ684Q.Seq.d/                       1108   0.0
SFH711 (SFH711Q) /CSM/SF/SFH7-A/SFH711Q.Seq.d/                       1108   0.0
SFG323 (SFG323Q) /CSM/SF/SFG3-A/SFG323Q.Seq.d/                       1108   0.0
SFF769 (SFF769Q) /CSM/SF/SFF7-C/SFF769Q.Seq.d/                       1108   0.0
SFD191 (SFD191Q) /CSM/SF/SFD1-D/SFD191Q.Seq.d/                       1108   0.0
SFC368 (SFC368Q) /CSM/SF/SFC3-C/SFC368Q.Seq.d/                       1108   0.0
CHD734 (CHD734Q) /CSM/CH/CHD7-B/CHD734Q.Seq.d/                       1108   0.0
CHD282 (CHD282Q) /CSM/CH/CHD2-D/CHD282Q.Seq.d/                       1108   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

M19491|M19491.1 Slime mold (D.discoideum) ubiquitin p229C/pLK229 gene, complete cds.  1100  0.0  2
M23748|M23748.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB19.  1084  0.0  2
M19666|M19666.1 Slime mold (D.discoideum) ubiquitin gene, 3' end, clone p229C.  1084  0.0  2
M23753|M23753.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB14.   624  0.0  2
M23754|M23754.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB2.   618  e-173  2
M19492|M19492.1 Slime mold (D.discoideum) ubiquitin lambda-229 gene, complete cds.   603  e-168  2
M23751|M23751.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB18.   482  e-132  3
M23752|M23752.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB17.   482  e-132  3
CF181989|CF181989.1 ISO4G3F Iso cDNA Isotricha sp. BBF-2003 cDNA similar to ubiquitin, mRNA sequence.   151  2e-78  4
CF181994|CF181994.1 ISO4G8F Iso cDNA Isotricha sp. BBF-2003 cDNA similar to ubiquitin, mRNA sequence.   151  2e-78  4
dna update 2003. 9.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A27806(A27806) polyubiquitin 5 (clone pLK229) - slime mold (Dict...   362   7e-99
M19666_1(M19666|pid:none) Slime mold (D.discoideum) ubiquitin ge...   362   7e-99
B34080(B34080)polyubiquitin 5 (clone DCUB19) - slime mold (Dicty...   362   7e-99
M23754_1(M23754|pid:none) D.discoideum ubiquitin mRNA, complete ...   360   3e-98
AY957885_1(AY957885|pid:none) Gracilaria lemaneiformis polyubiqu...   347   3e-94
AB021974_1(AB021974|pid:none) Bombyx mori UBI3 mRNA for polyubiq...   346   4e-94
Y12081_1(Y12081|pid:none) Suberites domuncula mRNA for polyubiqu...   346   4e-94
S32020(S32020) polyubiquitin 6 - Geodia cydonium  &X70917_1(X709...   346   4e-94
T16144(T16144) ubiquitin - Caenorhabditis elegans  &U23172_1(U23...   346   4e-94
S53719(S53719;S73107;S71069)polyubiquitin 6 - red alga (Gracilar...   344   2e-93
protein update 2009. 6.17
PSORT 

 psg: 0.85  gvh: 0.53  alm: 0.43  top: 0.57  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 1.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for VFC105 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VFC105Z
3' end seq. 
>VFC105Z.Seq
----------TTNCCNNNNAANTTNAANGGTANNNNNACNTTNAAATTTAAAANAANTTC
NANNNAAANAANGTTTTNCNNCANNTCANNANNGTTTNNTTTTNNNTGGTAANCANTNAN
AANATGGTNGNNNNTCTNTNNTNCAATATCCAAAAANAATNNNCTNTCCACTTGGTCCTC
ANATTAANAGGTGGTATGCAAATCNTTGTNAAAACATTAACTGGTAANACCATCNCTCTT
NAAGTTNAGGGNTCANATAATATTNAAAATGTTAAANCAAANATTCAAGACAAANAAGGT
ATCCCACCAGACCANCAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACT
CTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTCCTCAGATTAAGAGGT
GGTATGCAAATTTTTGTCAAAACCCTCACTGGTAAGACTATTACACTCGAAGTTGAAGGT
TCTGATAACATTGAGAATGTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGAT
CAACAACGTCTCATTTTCGCCGGTAAACAATTGGAGGATGGTCGTACTCTCTCTGATTAC
AACATTCAAAAGGAATCCACTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATT
TTTGTAAAAACTCTCACTGGTAAAACCATTACACTCGAAGTTGAAGGTAGTGACAACATT
GAGAATGTAAAAACAAAAATTCAAGACAAAGAAGGTATCCCA
Length of 3' end seq. 752
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -