>VFC101 (VFC101Q) /CSM/VF/VFC1-A/VFC101Q.Seq.d/
XXXXXXXXXXGAATCCATCATTCGAATGTGTTAAGAAGATCGTTTGTGGGAAGATATCGT
TCAAACCGGTATCCTCTTTGCAATTATAAACCTCGTCTTTATTCTCATCTCTTTCTGTAA
CTATAGCTTAATTTCACTCTTTGGTTATACAGCTTTCACTGTAACTATCACCTCTATACT
TTTCCATTTAATCTCTTTAATTTTATCAAAATATGTTCAAGGTGTATCTTTAAATAATCA
ATTCACTGATCAATTAAAAACTCTCAGTTTCCATATTCATGATGCTGTCATTGAAAAACA
AGTTAATAATGTTGCTGAATTAATCAACACTGTTTTAAGTATTGCAAAGGACGTATTTGG
TTGCAAGAGTGTTTATCTCTCTGCTCAATTTGCCATCGTTTTTTATTTAATCGGTTGTTT
AAGCAAATGTTTATCAAATACTGCCACCCTCTACTTTGGTTTCCTCGTTTCCTTTGTTGT
TCCAAGACTCTACGTTGAAAAGAAAGAAGTTATTGACCAACAATTCTCTAAAGNATGNGC
TACGTGGCCAAAGACCCCACTTTCAA

---siirmc*EDRLWEDIVQTGILFAIINLVFILISFCNYSLISLFGYTAFTVTITSILF
HLISLILSKYVQGVSLNNQFTDQLKTLSFHIHDAVIEKQVNNVAELINTVLSIAKDVFGC
KSVYLSAQFAIVFYLIGCLSKCLSNTATLYFGFLVSFVVPRLYVEKKEVIDQQFSKXXAT
WPKTPLS

Frame A:
---npsfecvkkivcgkisfkpvsslql*tsslfsslsvtia*fhslviqlsl*lsplyf
si*sl*fyqnmfkvyl*iinslin*klsvsifmmlslknklimlln*stlf*vlqrtylv
arvfisllnlpsffi*svv*anvyqilppstlvssfpllfqdstlkrkklltnnslkxxl
rgqrphfq


Frame B:
---ihhsnvlrrsfvgryrsnryplcnykprlyshlfl*l*lnftlwlysfhcnyhlytf
pfnlfnfikicsrcifk*sih*siknsqfpys*cch*kts**cc*inqhcfkyckgriwl
qeclslcsichrflfnrlfkqmfikychpllwfprflccsktlr*kersy*ptil*xmxy
vakdptf


Frame C:
---siirmc*EDRLWEDIVQTGILFAIINLVFILISFCNYSLISLFGYTAFTVTITSILF
HLISLILSKYVQGVSLNNQFTDQLKTLSFHIHDAVIEKQVNNVAELINTVLSIAKDVFGC
KSVYLSAQFAIVFYLIGCLSKCLSNTATLYFGFLVSFVVPRLYVEKKEVIDQQFSKXXAT
WPKTPLS

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFC101 (VFC101Q) /CSM/VF/VFC1-A/VFC101Q.Seq.d/                       1090   0.0
AFF826 (AFF826Q) /CSM/AF/AFF8-B/AFF826Q.Seq.d/                       1029   0.0
CFI667 (CFI667Q) /CSM/CF/CFI6-C/CFI667Q.Seq.d/                       1023   0.0
VHN302 (VHN302Q) /CSM/VH/VHN3-A/VHN302Q.Seq.d/                       1019   0.0
VFN288 (VFN288Q) /CSM/VF/VFN2-D/VFN288Q.Seq.d/                       1019   0.0
VFN287 (VFN287Q) /CSM/VF/VFN2-D/VFN287Q.Seq.d/                       1019   0.0
VFM868 (VFM868Q) /CSM/VF/VFM8-C/VFM868Q.Seq.d/                       1019   0.0
VFM653 (VFM653Q) /CSM/VF/VFM6-C/VFM653Q.Seq.d/                       1019   0.0
VFL582 (VFL582Q) /CSM/VF/VFL5-D/VFL582Q.Seq.d/                       1019   0.0
VFL275 (VFL275Q) /CSM/VF/VFL2-D/VFL275Q.Seq.d/                       1019   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AY164994|AY164994.1 Dictyostelium discoideum RTNLC (RTNLC) mRNA, complete cds.   969  0.0  2
AY164656|AY164656.1 Dictyostelium discoideum RTNLC (RTNLC) gene, complete cds.   565  0.0  3
AL713868|AL713868.12 Human DNA sequence from clone RP11-488L4 on chromosome 1.    38  0.33  3
AF083085|AF083085.1 Carassius auratus putative odorant receptor (GFB9) mRNA, partial cds.    46  0.47  1
AC108490|AC108490.2 Homo sapiens chromosome 4 clone CTD-2205L8, WORKING DRAFT SEQUENCE, 10 unordered pieces.    40  0.94  2
AC019173|AC019173.4 Homo sapiens BAC clone RP11-185H6 from 4, complete sequence.    40  1.1  2
BZ759902|BZ759902.1 622_2U2_G03_BAC_024 RPCI-86 Male Feline BAC Felis catus genomic, DNA sequence.    34  1.2  2
BX284688|BX284688.7 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    40  1.7  4
AL645698|AL645698.1 Human DNA sequence from clone RP5-1070D5 on chromosome 1.    44  1.9  1
AC004029|AC004029.1 Human BAC clone CTB-35E18 from 7q31, complete sequence.    44  1.9  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK297492_1(AK297492|pid:none) Homo sapiens cDNA FLJ55108 complet...    48   2e-04
L10334_1(L10334|pid:none) Homo sapiens neuroendocrine-specific p...    47   4e-04
(Q5IS59) RecName: Full=Reticulon-1;  &AY665269_1(AY665269|pid:no...    47   4e-04
(Q16799) RecName: Full=Reticulon-1; AltName: Full=Neuroendocrine...    47   4e-04
CR457030_1(CR457030|pid:none) Homo sapiens full open reading fra...    47   4e-04
AB074899_1(AB074899|pid:none) Mus musculus Rtn-1A mRNA for retic...    47   5e-04
U17603_1(U17603|pid:none) Rattus norvegicus rS-Rex-s mRNA, compl...    47   5e-04
(Q8K0T0) RecName: Full=Reticulon-1; AltName: Full=Neuroendocrine...    47   5e-04
A60021(A60021) tropomyosin-related protein, neuronal - rat  &X52...    47   5e-04
BC116162_1(BC116162|pid:none) Bos taurus reticulon 1, mRNA (cDNA...    47   5e-04

 psg: 0.75  gvh: 0.54  alm: 0.18  top: 0.77  tms: 0.27  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 24.0 %: plasma membrane
	 12.0 %: mitochondrial
	 12.0 %: vacuolar
	 12.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for VFC101 is end

>VFC101Z.Seq
----------GAATCCATCATTCGAATGTGTTAAGAAGATCGTTTGTGGGAAGATATCGT
TCAAACCGGTATCCTCTTTGCAATTATAAACCTCGTCTTTATTCTCATCTCTTTCTGTAA
CTATAGCTTAATTTCACTCTTTGGTTATACAGCTTTCACTGTAACTATCACCTCTATACT
TTTCCATTTAATCTCTTTAATTTTATCAAAATATGTTCAAGGTGTATCTTTAAATAATCA
ATTCACTGATCAATTAAAAACTCTCAGTTTCCATATTCATGATGCTGTCATTGAAAAACA
AGTTAATAATGTTGCTGAATTAATCAACACTGTTTTAAGTATTGCAAAGGACGTATTTGG
TTGCAAGAGTGTTTATCTCTCTGCTCAATTTGCCATCGTTTTTTATTTAATCGGTTGTTT
AAGCAAATGTTTATCAAATACTGCCACCCTCTACTTTGGTTTCCTCGTTTCCTTTGTTGT
TCCAAGACTCTACGTTGAAAAGAAAGAAGTTATTGACCAACAATTCTCTAAAGNATGNGC
TACGTGGCCAAAGACCCCACTTTCAA