VFB882 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VFB882
Library	VF (Link to library)
Clone ID	VFB882 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U13884-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VF/VFB8-D/VFB882Q.Seq.d/
Representative seq. ID	VFB882E (Link to Original site)
Representative DNA sequence	>VFB882 (VFB882Q) /CSM/VF/VFB8-D/VFB882Q.Seq.d/ CTGGTGAATTATTAAGAGAGGGTGAAAGATTAGTTCAACAAAAAGTTCATCCACAAACTA TTATTAGTGGTTGGAGATTAGCACTTGAAACTGCACGTGCTGCATTACAATCATCAACTC AAGATCATTCTTCAGATAAAGTTAAATTTAGAGAAGATTTATTAAATATAGCAAGAACAA CATTAAGTTCAAAGATTTTACATACAGAGAAAGATCATTTCGCAAATATGGTAGTTGATG CAGTTTTAAGATTAAATGGAAATACCAATTTAGATAATATTCATATTATAAAGAAGAGTG GTGGTTCATTAAGAGAGTCCTATTTAGATGAAGGATTCATTTTAGAAAAGAAGATTGGTG TTGGTTGTCCAAAACGTTTAGAGAATCCAAAGATTTTAATTGCAAACACAGCTATGGATA CTGATAAGATTAAGATTTTCGGTGGTAAGGTTGTTGTAGATTCAATGACTGAACTCGCCA AAATGGAAGATGCAGAAAAAGAGAAAATGTTGAATAAATGTAAAAAGATCGTTGATCATG GTATCAATTGTTTCGTCAATCGTCAATTGGTCTATAATTTACCAGAGCAATATTTCGCCG AGCATGGTGTTATGTCAATTGAACATGCAGATTTCGATGGTATTGAACGTTTGGCTTTGG TAACTGGCGCTGAAATCGTCTCAACTTTTGATCACCCTGAATTGGTCAAGATTGGCACTT GTAAACTCATTGAAGAGGTTATGATCGGTGAAGATAAGGTCATCCGTTTCTCTGGTATTC CATCTGGTGAGGCTTGTACCATCGTTTTACGTGGTGCTACCTCTCACATTCTCGAAGAGG CTGAACGTTCCATTCACGATGCACTCTGTGTGTTGGCTGTAACTGTAGCTGAAACTCGTA CTGTTTTAGGTGCTGGTTGCTCAGAGATGATCATGAGTAAAGCTGTCGATGAATTGGCTG CAATCACTCCAGGTAAGAAAGCAATGGCTATCGAATCTTTTGCCAAAGCTCTTCGTCAAA TTCCAACAATCATTGCTAATAATGCCGGTTACGATAGTTCAGAATTAGTCTCTCAATTAA AAGCTGCCCATCATCAAGGTGATAAAAAAGCTGGTCTCAACATGAGAGATGGTTGTATTG GAAATGCTGAAGAATTAGGTGTCATTGAATCATTTAAAGTTAAACAACAAGTTTTAGTAT CTGCTCACGAAGCCGCTGAAATAATCATGAGAGTTGATGATATCTTAAGAGCTGCTCCAA GAC
sequence update	2001. 6. 9
Translated Amino Acid sequence	GELLREGERLVQQKVHPQTIISGWRLALETARAALQSSTQDHSSDKVKFREDLLNIARTT LSSKILHTEKDHFANMVVDAVLRLNGNTNLDNIHIIKKSGGSLRESYLDEGFILEKKIGV GCPKRLENPKILIANTAMDTDKIKIFGGKVVVDSMTELAKMEDAEKEKMLNKCKKIVDHG INCFVNRQLVYNLPEQYFAEHGVMSIEHADFDGIERLALVTGAEIVSTFDHPELVKIGTC KLIEEVMIGEDKVIRFSGIPSGEACTIVLRGATSHILEEAERSIHDALCVLAVTVAETRT VLGAGCSEMIMSKAVDELAAITPGKKAMAIESFAKALRQIPTIIANNAGYDSSELVSQLK AAHHQGDKKAGLNMRDGCIGNAEELGVIESFKVKQQVLVSAHEAAEIIMRVDDILRAAPR
Translated Amino Acid sequence (All Frames)	Frame A: lvnyervkdfnkkfihklllvvgdhlklhvlhynhqlkiilqiklnlekiyiqeq hvqrfyiqrkiisqiwlmqfdmeipiiifilrrvvvhespimkdsfkrrlv lvvqnvriqrflqtqlwilirlrfsvvrlliqlnspkwkmqkkrkcinvkrslim vsivssivnwsiiyqsnispsmvlcqlnmqismvlnvwlwlalkssqllitlnwsrlal vnslkrlsvkirssvslvfhlvrlvpsfyvvlpltfskrlnvpftmhsvcwlllklv lfvlvaqrsvklsmnwlqslqvrkqwlsnllpklfvkfqqsllimpvtivqnsln klpiikvikklvstemvvlemlknvslnhlklnnkfylltkplkselmisellq d Frame B: wiikrgkisstkssstnyywleistnctccitiinsrsffrsirrfikysknn ikfkdftyrersfrkygscsfkikwkyqfrysyykeewwfikrvlfrrihfrkedwc wlsktfreskdfnckhsygy*ddfrwgccrfndtrqngrcrkrenvemkdrsw yqlfrqssiglftraifrrawcyvntcrfrwytfgfgnwrnrlnfspigqdwhl thrgydrrghpflwysiwglyhrftwcylshsrrgtfhsrctlcvgcncsnsy cfrcwllrddhescrigcnhsresngyrifcqssssnsnnhccrlrfrislsik scpssr*kswsqherwlywkcrirchiisttsfsicsrsrnnhes**ylkscsk Frame C: GELLREGERLVQQKVHPQTIISGWRLALETARAALQSSTQDHSSDKVKFREDLLNIARTT LSSKILHTEKDHFANMVVDAVLRLNGNTNLDNIHIIKKSGGSLRESYLDEGFILEKKIGV GCPKRLENPKILIANTAMDTDKIKIFGGKVVVDSMTELAKMEDAEKEKMLNKCKKIVDHG INCFVNRQLVYNLPEQYFAEHGVMSIEHADFDGIERLALVTGAEIVSTFDHPELVKIGTC KLIEEVMIGEDKVIRFSGIPSGEACTIVLRGATSHILEEAERSIHDALCVLAVTVAETRT VLGAGCSEMIMSKAVDELAAITPGKKAMAIESFAKALRQIPTIIANNAGYDSSELVSQLK AAHHQGDKKAGLNMRDGCIGNAEELGVIESFKVKQQVLVSAHEAAEIIMRVDDILRAAPR
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VFB882 (VFB882Q) /CSM/VF/VFB8-D/VFB882Q.Seq.d/ 2504 0.0 VFF485 (VFF485Q) /CSM/VF/VFF4-D/VFF485Q.Seq.d/ 1957 0.0 VFE272 (VFE272Q) /CSM/VF/VFE2-C/VFE272Q.Seq.d/ 1465 0.0 VFG888 (VFG888Q) /CSM/VF/VFG8-D/VFG888Q.Seq.d/ 1457 0.0 SFG790 (SFG790Q) /CSM/SF/SFG7-D/SFG790Q.Seq.d/ 1457 0.0 VFN218 (VFN218Q) /CSM/VF/VFN2-A/VFN218Q.Seq.d/ 1443 0.0 AFO607 (AFO607Q) /CSM/AF/AFO6-A/AFO607Q.Seq.d/ 1433 0.0 VFH779 (VFH779Q) /CSM/VF/VFH7-D/VFH779Q.Seq.d/ 1358 0.0 CFJ360 (CFJ360Q) /CSM/CF/CFJ3-C/CFJ360Q.Seq.d/ 1356 0.0 AFI372 (AFI372Q) /CSM/AF/AFI3-C/AFI372Q.Seq.d/ 1350 0.0
own update	2001.11.27
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AW766196\|AW766196.1 da83e09.y1 Harland stage 19-23 Xenopus laevis cDNA clone IMAGE:3201544 5' similar to gb:Z31553 M.musculus (MOUSE);, mRNA sequence. 58 6e-16 4 AF442546\|AF442546.1 Physarum polycephalum CCT chaperonin beta subunit mRNA, complete cds. 40 2e-14 6 AI899910\|AI899910.1 sb96a09.y1 Gm-c1012 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1012-497 5' similar to SW:TCPB_MOUSE P80314 T-COMPLEX PROTEIN 1, BETA SUBUNIT ;, mRNA sequence. 62 7e-13 3 BC042347\|BC042347.1 Xenopus laevis, Similar to chaperonin subunit 2 (beta), clone MGC:52772 IMAGE:4684199, mRNA, complete cds. 62 2e-12 5 BU964457\|BU964457.1 sat14h01.y1 Gm-c1036 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1036-13801 5' similar to SW:TCPB_HUMAN P78371 T-COMPLEX PROTEIN 1, BETA SUBUNIT ;, mRNA sequence. 62 4e-12 2 BG045699\|BG045699.1 saa05a08.y1 Gm-c1058 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1058-399 5' similar to SW:TCPB_MOUSE P80314 T-COMPLEX PROTEIN 1, BETA SUBUNIT ;, mRNA sequence. 62 5e-12 2 AX489060\|AX489060.1 Sequence 6360 from Patent WO02053728. 44 9e-12 5 Z69239\|Z69239.1 S.pombe chromosome I cosmid c1D4. 66 3e-11 4 BE618039\|BE618039.1 601462202F1 NIH_MGC_67 Homo sapiens cDNA clone IMAGE:3865656 5', mRNA sequence. 50 4e-11 5 AW640950\|AW640950.1 cm01f09.w1 Blackshear/Soares normalized Xenopus egg library Xenopus laevis cDNA clone PBX0100F09 5', mRNA sequence. 50 5e-11 3
dna update	2003. 9.10
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (Q54ES9) RecName: Full=T-complex protein 1 subunit beta; ... 817 0.0 AF442546_1(AF442546\|pid:none) Physarum polycephalum CCT chaperon... 617 e-175 BC075536_1(BC075536\|pid:none) Xenopus tropicalis chaperonin cont... 580 e-164 AK316397_1(AK316397\|pid:none) Homo sapiens cDNA, FLJ79296 comple... 577 e-163 AK302157_1(AK302157\|pid:none) Homo sapiens cDNA FLJ52359 complet... 575 e-162 AK290767_1(AK290767\|pid:none) Homo sapiens cDNA FLJ75037 complet... 575 e-162 BT045297_1(BT045297\|pid:none) Salmo salar clone ssal-rgf-517-310... 574 e-162 CR457071_1(CR457071\|pid:none) Homo sapiens full open reading fra... 572 e-162 BC059558_1(BC059558\|pid:none) Danio rerio chaperonin containing ... 572 e-162 (Q5XIM9) RecName: Full=T-complex protein 1 subunit beta; ... 571 e-161
protein update	2009. 7.10
PSORT	psg: 0.75 gvh: 0.48 alm: 0.37 top: 0.53 tms: 0.00 mit: 0.27 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 48.0 %: cytoplasmic 44.0 %: nuclear 4.0 %: mitochondrial 4.0 %: peroxisomal >> prediction for VFB882 is cyt
5' end seq. ID	VFB882F
5' end seq.	>VFB882F.Seq CTGGTGAATTATTAAGAGAGGGTGAAAGATTAGTTCAACAAAAAGTTCATCCACAAACTA TTATTAGTGGTTGGAGATTAGCACTTGAAACTGCACGTGCTGCATTACAATCATCAACTC AAGATCATTCTTCAGATAAAGTTAAATTTAGAGAAGATTTATTAAATATAGCAAGAACAA CATTAAGTTCAAAGATTTTACATACAGAGAAAGATCATTTCGCAAATATGGTAGTTGATG CAGTTTTAAGATTAAATGGAAATACCAATTTAGATAATATTCATATTATAAAGAAGAGTG GTGGTTCATTAAGAGAGTCCTATTTAGATGAAGGATTCATTTTAGAAAAGAAGATTGGTG TTGGTTGTCCAAAACGTTTAGAGAATCCAAAGATTTTAATTGCAAACACAGCTATGGATA CTGATAAGATTAAGATTTTCGGTGGTAAGGTTGTTGTAGATTCAATGACTGAACTCGCCA AAATGGAAGATGCAGAAAAAGAGAAAATGTTGAATAAATGTAAAAAGATCGTTGATCATG GTATCAATTGTTTCGTCAATCGTCAATTGGTCTATAATTTACCAGA----------
Length of 5' end seq.	586
3' end seq. ID	VFB882Z
3' end seq.	>VFB882Z.Seq ----------GTAAAAAGATCGTTGATCATGGTATCAATTGTTTCGTCAATCGTCAATTG GTCTATAATTTACCAGAGCAATATTTCGCCGAGCATGGTGTTATGTCAATTGAACATGCA GATTTCGATGGTATTGAACGTTTGGCTTTGGTAACTGGCGCTGAAATCGTCTCAACTTTT GATCACCCTGAATTGGTCAAGATTGGCACTTGTAAACTCATTGAAGAGGTTATGATCGGT GAAGATAAGGTCATCCGTTTCTCTGGTATTCCATCTGGTGAGGCTTGTACCATCGTTTTA CGTGGTGCTACCTCTCACATTCTCGAAGAGGCTGAACGTTCCATTCACGATGCACTCTGT GTGTTGGCTGTAACTGTAGCTGAAACTCGTACTGTTTTAGGTGCTGGTTGCTCAGAGATG ATCATGAGTAAAGCTGTCGATGAATTGGCTGCAATCACTCCAGGTAAGAAAGCAATGGCT ATCGAATCTTTTGCCAAAGCTCTTCGTCAAATTCCAACAATCATTGCTAATAATGCCGGT TACGATAGTTCAGAATTAGTCTCTCAATTAAAAGCTGCCCATCATCAAGGTGATAAAAAA GCTGGTCTCAACATGAGAGATGGTTGTATTGGAAATGCTGAAGAATTAGGTGTCATTGAA TCATTTAAAGTTAAACAACAAGTTTTAGTATCTGCTCACGAAGCCGCTGAAATAATCATG AGAGTTGATGATATCTTAAGAGCTGCTCCAAGAC
Length of 3' end seq.	744
Connected seq. ID	VFB882P
Connected seq.	>VFB882P.Seq CTGGTGAATTATTAAGAGAGGGTGAAAGATTAGTTCAACAAAAAGTTCATCCACAAACTA TTATTAGTGGTTGGAGATTAGCACTTGAAACTGCACGTGCTGCATTACAATCATCAACTC AAGATCATTCTTCAGATAAAGTTAAATTTAGAGAAGATTTATTAAATATAGCAAGAACAA CATTAAGTTCAAAGATTTTACATACAGAGAAAGATCATTTCGCAAATATGGTAGTTGATG CAGTTTTAAGATTAAATGGAAATACCAATTTAGATAATATTCATATTATAAAGAAGAGTG GTGGTTCATTAAGAGAGTCCTATTTAGATGAAGGATTCATTTTAGAAAAGAAGATTGGTG TTGGTTGTCCAAAACGTTTAGAGAATCCAAAGATTTTAATTGCAAACACAGCTATGGATA CTGATAAGATTAAGATTTTCGGTGGTAAGGTTGTTGTAGATTCAATGACTGAACTCGCCA AAATGGAAGATGCAGAAAAAGAGAAAATGTTGAATAAATGTAAAAAGATCGTTGATCATG GTATCAATTGTTTCGTCAATCGTCAATTGGTCTATAATTTACCAGA----------GTAA AAAGATCGTTGATCATGGTATCAATTGTTTCGTCAATCGTCAATTGGTCTATAATTTACC AGAGCAATATTTCGCCGAGCATGGTGTTATGTCAATTGAACATGCAGATTTCGATGGTAT TGAACGTTTGGCTTTGGTAACTGGCGCTGAAATCGTCTCAACTTTTGATCACCCTGAATT GGTCAAGATTGGCACTTGTAAACTCATTGAAGAGGTTATGATCGGTGAAGATAAGGTCAT CCGTTTCTCTGGTATTCCATCTGGTGAGGCTTGTACCATCGTTTTACGTGGTGCTACCTC TCACATTCTCGAAGAGGCTGAACGTTCCATTCACGATGCACTCTGTGTGTTGGCTGTAAC TGTAGCTGAAACTCGTACTGTTTTAGGTGCTGGTTGCTCAGAGATGATCATGAGTAAAGC TGTCGATGAATTGGCTGCAATCACTCCAGGTAAGAAAGCAATGGCTATCGAATCTTTTGC CAAAGCTCTTCGTCAAATTCCAACAATCATTGCTAATAATGCCGGTTACGATAGTTCAGA ATTAGTCTCTCAATTAAAAGCTGCCCATCATCAAGGTGATAAAAAAGCTGGTCTCAACAT GAGAGATGGTTGTATTGGAAATGCTGAAGAATTAGGTGTCATTGAATCATTTAAAGTTAA ACAACAAGTTTTAGTATCTGCTCACGAAGCCGCTGAAATAATCATGAGAGTTGATGATAT CTTAAGAGCTGCTCCAAGAC
Length of connected seq.	1330
Full length Seq ID	VFB882E
Full length Seq.	>VFB882E.Seq CTGGTGAATTATTAAGAGAGGGTGAAAGATTAGTTCAACAAAAAGTTCATCCACAAACTA TTATTAGTGGTTGGAGATTAGCACTTGAAACTGCACGTGCTGCATTACAATCATCAACTC AAGATCATTCTTCAGATAAAGTTAAATTTAGAGAAGATTTATTAAATATAGCAAGAACAA CATTAAGTTCAAAGATTTTACATACAGAGAAAGATCATTTCGCAAATATGGTAGTTGATG CAGTTTTAAGATTAAATGGAAATACCAATTTAGATAATATTCATATTATAAAGAAGAGTG GTGGTTCATTAAGAGAGTCCTATTTAGATGAAGGATTCATTTTAGAAAAGAAGATTGGTG TTGGTTGTCCAAAACGTTTAGAGAATCCAAAGATTTTAATTGCAAACACAGCTATGGATA CTGATAAGATTAAGATTTTCGGTGGTAAGGTTGTTGTAGATTCAATGACTGAACTCGCCA AAATGGAAGATGCAGAAAAAGAGAAAATGTTGAATAAATGTAAAAAGATCGTTGATCATG GTATCAATTGTTTCGTCAATCGTCAATTGGTCTATAATTTACCAGAGCAATATTTCGCCG AGCATGGTGTTATGTCAATTGAACATGCAGATTTCGATGGTATTGAACGTTTGGCTTTGG TAACTGGCGCTGAAATCGTCTCAACTTTTGATCACCCTGAATTGGTCAAGATTGGCACTT GTAAACTCATTGAAGAGGTTATGATCGGTGAAGATAAGGTCATCCGTTTCTCTGGTATTC CATCTGGTGAGGCTTGTACCATCGTTTTACGTGGTGCTACCTCTCACATTCTCGAAGAGG CTGAACGTTCCATTCACGATGCACTCTGTGTGTTGGCTGTAACTGTAGCTGAAACTCGTA CTGTTTTAGGTGCTGGTTGCTCAGAGATGATCATGAGTAAAGCTGTCGATGAATTGGCTG CAATCACTCCAGGTAAGAAAGCAATGGCTATCGAATCTTTTGCCAAAGCTCTTCGTCAAA TTCCAACAATCATTGCTAATAATGCCGGTTACGATAGTTCAGAATTAGTCTCTCAATTAA AAGCTGCCCATCATCAAGGTGATAAAAAAGCTGGTCTCAACATGAGAGATGGTTGTATTG GAAATGCTGAAGAATTAGGTGTCATTGAATCATTTAAAGTTAAACAACAAGTTTTAGTAT CTGCTCACGAAGCCGCTGAAATAATCATGAGAGTTGATGATATCTTAAGAGCTGCTCCAA GAC
Length of full length seq.	1263

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas