>VFB877 (VFB877Q) /CSM/VF/VFB8-D/VFB877Q.Seq.d/
CACTGTTGGCCTACTGGTATGCCATTGGCTGAATATCCATCGGTAAATGTTAGAATGTAT
GGTGTCGAAAGTAATTTCCTTTCAAGTGCTTATTTAGATTTCTATGAAGTAACTGAAATG
TCCAAAACAATAACTTTCCCAACCATAGATAATGGTGCTGGTAAGAAGATACCCGATGTT
ATCAATAGTTTATATGTNAATGAACATCGCGATATCATTTXXXXXXXXXXTCAAACTTCC
TATGGTTCTCCCATTTTGGTCAATGATGATGAATTCTATAGAATTATGCAGATGGTTTAC
TCTGTTACCAACGATCCATCGGTTGTTTTACCAAGTGTTGCTCCAAAATCAAAAGTACTC
ATTAAATTAAAACAAGGTACCTCTGAAATTGAAAGAGAGTACGTCATCAATGGTGTTAGA
AATTTCATTAAAACTGATAATATTCAAGTTATGGATACTCAACATCTTTTGGACACAACA
GAGACTGCCGTCACAATTTTAAATATCTTCTTTTACACAGTTTCAGTGGCTTCCATTGTT
TTGTGTTTCTTTATGCTATGGGTTTCATTCAGTGCAAATATTCATGAAAACTCTTGGGAA
TTTGGTGTTTTACGTTCAATTGGTTTAACAAGTTTTCAAGTTACTCGTATCTATATCTAT
GAAGCATTGGTTTTAATCTTTTCTTCAATGATACTTGGTCTTTCAATTGGTTTAGGTATC
GCCCTAACTCTTACCCTTCAATTCGATCTTTTCACAGAGTTACCTTTTAGTTTTGAATTC
CACTTTTGGTTCATTGGTGTACTCATTATGTCAATTTGTATCGCTATCTTTGTTTCTTAT
CAAGCATCAAAAGAATATAGAACAAGAGAAATTGCATCAGTTTTAAAGGGTAAATAAAAA
AAAAATAAAAAATAAAAAATAAATAAATAAAAAATAAAAAAAGTTATTTATTAAA

HCWPTGMPLAEYPSVNVRMYGVESNFLSSAYLDFYEVTEMSKTITFPTIDNGAGKKIPDV
INSLYVNEHRDII---

---QTSYGSPILVNDDEFYRIMQMVYSVTNDPSVVLPSVAPKSKVLIKLKQGTSEIEREY
VINGVRNFIKTDNIQVMDTQHLLDTTETAVTILNIFFYTVSVASIVLCFFMLWVSFSANI
HENSWEFGVLRSIGLTSFQVTRIYIYEALVLIFSSMILGLSIGLGIALTLTLQFDLFTEL
PFSFEFHFWFIGVLIMSICIAIFVSYQASKEYRTREIASVLKGK*kknkk*kink*kikk
viy*

Frame A:
HCWPTGMPLAEYPSVNVRMYGVESNFLSSAYLDFYEVTEMSKTITFPTIDNGAGKKIPDV
INSLYVNEHRDII---

---snflwfshfgq***il*nyadgllcyqrsigcftkccskiksth*iktryl*n*krv
rhqwc*kfh*n**yssygystsfghnrdcrhnfkylllhsfsgfhcfvflyamgfiqcky
s*kllgiwcftfnwfnkfssysylyl*sigfnlffndtwsfnwfryrpnsypsirsfhrv
tf*f*ipllvhwcthyvnlyrylcflssikri*nkrncisfkg*ikkk*kiknk*iknkk
syll

Frame B:
tvgllvchwlnihr*mlecmvskvisfqvli*ismk*lkcpkq*lsqp*imvlvrrypml
sivymxmniaisf---

---QTSYGSPILVNDDEFYRIMQMVYSVTNDPSVVLPSVAPKSKVLIKLKQGTSEIEREY
VINGVRNFIKTDNIQVMDTQHLLDTTETAVTILNIFFYTVSVASIVLCFFMLWVSFSANI
HENSWEFGVLRSIGLTSFQVTRIYIYEALVLIFSSMILGLSIGLGIALTLTLQFDLFTEL
PFSFEFHFWFIGVLIMSICIAIFVSYQASKEYRTREIASVLKGK*kknkk*kink*kikk
viy*

Frame C:
llaywyaig*isigkc*nvwcrk*fpfkclfrfl*sn*nvqnnnfpnhr*wcw*edtrcy
q*ficx*tsryh---

---klpmvlpfwsmmmnsielcrwftllptihrlfyqvllqnqkysln*nkvplklkest
ssmvleislkliifklwilnifwtqqrlpsqf*issftqfqwlplfcvslcygfhsvqif
mktlgnlvfyvqlv*qvfkllvsismkhwf*sflq*ylvfqlv*vsp*llpfnsifsqsy
llvlnstfgslvyslcqfvslslflikhqknieqeklhqf*rvnkkkiknkk*inkk*kk
lfik

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFB877 (VFB877Q) /CSM/VF/VFB8-D/VFB877Q.Seq.d/                       1699   0.0
CFE511 (CFE511Q) /CSM/CF/CFE5-A/CFE511Q.Seq.d/                       1283   0.0
CHF382 (CHF382Q) /CSM/CH/CHF3-D/CHF382Q.Seq.d/                       1259   0.0
CHR448 (CHR448Q) /CSM/CH/CHR4-B/CHR448Q.Seq.d/                       1239   0.0
CHF401 (CHF401Q) /CSM/CH/CHF4-A/CHF401Q.Seq.d/                       1209   0.0
CHI459 (CHI459Q) /CSM/CH/CHI4-C/CHI459Q.Seq.d/                       1168   0.0
SHC224 (SHC224Q) /CSM/SH/SHC2-A/SHC224Q.Seq.d/                       1063   0.0
VHF125 (VHF125Q) /CSM/VH/VHF1-B/VHF125Q.Seq.d/                       1021   0.0
VHM582 (VHM582Q) /CSM/VH/VHM5-D/VHM582Q.Seq.d/                        995   0.0
AFB784 (AFB784Q) /CSM/AF/AFB7-D/AFB784Q.Seq.d/                        952   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.  1092  0.0  4
AL583863|AL583863.16 Human DNA sequence from clone RP11-118G19 on chromosome 1.    44  0.16  2
AF193811|AF193811.1 Dictyostelium discoideum Rh-like glycoprotein RhgA mRNA, complete cds.    38  0.69  2
BW053005|BW053005.1 Ciona intestinalis cDNA, clone:cibd077d21, 5' end, single read.    46  0.82  1
BW269119|BW269119.1 Ciona intestinalis cDNA, clone:cign052e08, 5' end, single read.    46  0.82  1
BV068069|BV068069.1 S212P6898FD8.T0 CZECHII/Ei Mus musculus STS genomic, sequence tagged site.    46  0.82  1
AV905152|AV905152.1 Ciona intestinalis cDNA, clone:rciad81j03, 3' end, single read.    46  0.82  1
AK112688|AK112688.1 Ciona intestinalis cDNA, clone:cieg031o03, full insert sequence.    46  0.82  1
BW219103|BW219103.1 Ciona intestinalis cDNA, clone:cieg095e02, 5' end, single read.    46  0.82  1
AF510714|AF510714.1 Dictyostelium discoideum Rh-like glycoprotein gene, complete cds.    38  0.82  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116956_66(AC116956|pid:none) Dictyostelium discoideum chromoso...   373   e-102
CT005262_48(CT005262|pid:none) Leishmania major strain Friedlin,...    85   4e-15
AM502241_48(AM502241|pid:none) Leishmania infantum chromosome 23.      80   1e-13
CP000562_65(CP000562|pid:none) Methanoculleus marisnigri JR1, co...    47   0.001
CP000562_1813(CP000562|pid:none) Methanoculleus marisnigri JR1, ...    47   0.001
AE009951_1925(AE009951|pid:none) Fusobacterium nucleatum subsp. ...    45   0.003
BX294152_232(BX294152|pid:none) Rhodopirellula baltica SH 1 comp...    45   0.003
CP000921_1821(CP000921|pid:none) Streptococcus pneumoniae Taiwan...    44   0.008
AE005672_1912(AE005672|pid:none) Streptococcus pneumoniae TIGR4,...    44   0.008
AE009441_2588(AE009441|pid:none) Pyrobaculum aerophilum str. IM2...    44   0.011

 psg: 0.75  gvh: 0.27  alm: 0.17  top: 0.67  tms: 0.20  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 24.0 %: plasma membrane
	 16.0 %: vacuolar
	 12.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for VFB877 is end

>VFB877F.Seq
CACTGTTGGCCTACTGGTATGCCATTGGCTGAATATCCATCGGTAAATGTTAGAATGTAT
GGTGTCGAAAGTAATTTCCTTTCAAGTGCTTATTTAGATTTCTATGAAGTAACTGAAATG
TCCAAAACAATAACTTTCCCAACCATAGATAATGGTGCTGGTAAGAAGATACCCGATGTT
ATCAATAGTTTATATGTNAATGAACATCGCGATATCATTT----------

>VFB877Z.Seq
----------TCAAACTTCCTATGGTTCTCCCATTTTGGTCAATGATGATGAATTCTATA
GAATTATGCAGATGGTTTACTCTGTTACCAACGATCCATCGGTTGTTTTACCAAGTGTTG
CTCCAAAATCAAAAGTACTCATTAAATTAAAACAAGGTACCTCTGAAATTGAAAGAGAGT
ACGTCATCAATGGTGTTAGAAATTTCATTAAAACTGATAATATTCAAGTTATGGATACTC
AACATCTTTTGGACACAACAGAGACTGCCGTCACAATTTTAAATATCTTCTTTTACACAG
TTTCAGTGGCTTCCATTGTTTTGTGTTTCTTTATGCTATGGGTTTCATTCAGTGCAAATA
TTCATGAAAACTCTTGGGAATTTGGTGTTTTACGTTCAATTGGTTTAACAAGTTTTCAAG
TTACTCGTATCTATATCTATGAAGCATTGGTTTTAATCTTTTCTTCAATGATACTTGGTC
TTTCAATTGGTTTAGGTATCGCCCTAACTCTTACCCTTCAATTCGATCTTTTCACAGAGT
TACCTTTTAGTTTTGAATTCCACTTTTGGTTCATTGGTGTACTCATTATGTCAATTTGTA
TCGCTATCTTTGTTTCTTATCAAGCATCAAAAGAATATAGAACAAGAGAAATTGCATCAG
TTTTAAAGGGTAAATAAAAAAAAAATAAAAAATAAAAAATAAATAAATAAAAAATAAAAA
AAGTTATTTATTAAA

>VFB877P.Seq
CACTGTTGGCCTACTGGTATGCCATTGGCTGAATATCCATCGGTAAATGTTAGAATGTAT
GGTGTCGAAAGTAATTTCCTTTCAAGTGCTTATTTAGATTTCTATGAAGTAACTGAAATG
TCCAAAACAATAACTTTCCCAACCATAGATAATGGTGCTGGTAAGAAGATACCCGATGTT
ATCAATAGTTTATATGTNAATGAACATCGCGATATCATTT----------TCAAACTTCC
TATGGTTCTCCCATTTTGGTCAATGATGATGAATTCTATAGAATTATGCAGATGGTTTAC
TCTGTTACCAACGATCCATCGGTTGTTTTACCAAGTGTTGCTCCAAAATCAAAAGTACTC
ATTAAATTAAAACAAGGTACCTCTGAAATTGAAAGAGAGTACGTCATCAATGGTGTTAGA
AATTTCATTAAAACTGATAATATTCAAGTTATGGATACTCAACATCTTTTGGACACAACA
GAGACTGCCGTCACAATTTTAAATATCTTCTTTTACACAGTTTCAGTGGCTTCCATTGTT
TTGTGTTTCTTTATGCTATGGGTTTCATTCAGTGCAAATATTCATGAAAACTCTTGGGAA
TTTGGTGTTTTACGTTCAATTGGTTTAACAAGTTTTCAAGTTACTCGTATCTATATCTAT
GAAGCATTGGTTTTAATCTTTTCTTCAATGATACTTGGTCTTTCAATTGGTTTAGGTATC
GCCCTAACTCTTACCCTTCAATTCGATCTTTTCACAGAGTTACCTTTTAGTTTTGAATTC
CACTTTTGGTTCATTGGTGTACTCATTATGTCAATTTGTATCGCTATCTTTGTTTCTTAT
CAAGCATCAAAAGAATATAGAACAAGAGAAATTGCATCAGTTTTAAAGGGTAAATAAAAA
AAAAATAAAAAATAAAAAATAAATAAATAAAAAATAAAAAAAGTTATTTATTAAA