VFB866
Library VF
(Link to library)
Clone ID VFB866
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16349-1
Original site URL
Representative seq. ID VFB866Z
(Link to Original site)
Representative DNA sequence
>VFB866 (VFB866Q) /CSM/VF/VFB8-C/VFB866Q.Seq.d/
XXXXXXXXXXTTCATCAGTCGATTCAATTAGTAATTTACCAACCACAATGCAATTATTCG
CTGGTATTAAAAGTATTTGCACAGAGATGGCAATGGATGGTTGTGAGAAATGTTCAGGAA
ATTCACCAACTACCACCTGTGATGTTTTGCCAGTTTACTCCTCCCTTTGTATGGCTATGC
CTGATATGTCACAATGTGCCAATTGGACCAAGATGTGTTCCTCCTCTGGTCAACTCTACA
ACTCTCAAATCACATCAGACTATTGTGTCGCCTCTGTTGCTGACGCCGTTCCAATCATGA
GAATGTACTTTCACACTGGTATCTTGGACTATATCCTCTTTAAATCTTGGGTACCAAGAA
CTGACCGTCAATTTGCTGGTTCATGGTTTGCCATCTTTTTCTTTGCTATCTTTTTTGAAC
TCGAAAAAACCCTTAGAAGTATTTTAGAAAAAAGATGGACTCCAAACAAAAAAGATTCAG
AAGATAATAATTTAATTAATTCATCTTTCTTAAGTGGTTCTTATCCAAAATTCTCTTATA
GAGATATAATTAGAGGATGTTTACATGCTATCGAACTAACATGTAGTTATGCTTTAATGC
TTGTTGCAATGACATTTAATGTTGCACTCTTTTTTGCAGTA
sequence update 2001. 6. 1
Translated Amino Acid sequence
---SSVDSISNLPTTMQLFAGIKSICTEMAMDGCEKCSGNSPTTTCDVLPVYSSLCMAMP
DMSQCANWTKMCSSSGQLYNSQITSDYCVASVADAVPIMRMYFHTGILDYILFKSWVPRT
DRQFAGSWFAIFFFAIFFELEKTLRSILEKRWTPNKKDSEDNNLINSSFLSGSYPKFSYR
DIIRGCLHAIELTCSYALMLVAMTFNVALFFAV


Translated Amino Acid sequence (All Frames)
Frame A:
---SSVDSISNLPTTMQLFAGIKSICTEMAMDGCEKCSGNSPTTTCDVLPVYSSLCMAMP
DMSQCANWTKMCSSSGQLYNSQITSDYCVASVADAVPIMRMYFHTGILDYILFKSWVPRT
DRQFAGSWFAIFFFAIFFELEKTLRSILEKRWTPNKKDSEDNNLINSSFLSGSYPKFSYR
DIIRGCLHAIELTCSYALMLVAMTFNVALFFAV


Frame B:
---hqsiqlviyqpqcnyslvlkvfaqrwqwmvvrnvqeihqlppvmfcqftppfvwlcl
ichnvpigprcvpplvnsttlkshqtivspllltpfqs*ectftlvswtisslnlgyqel
tvnllvhglpsfsllsflnskkplevf*kkdglqtkkiqkiii*lihls*vvliqnslie
i*ledvymlsn*hvvml*cllq*hlmlhsflq


Frame C:
---isrfn**ftnhnaiirwy*kylhrdgngwl*emfrkftnyhl*cfaslllplygya*
yvtmcqldqdvfllwstlqlsnhirllcrlcc*rrsnhenvlshwylglypl*ilgtkn*
psicwfmvchlflcylf*trknp*kyfrkkmdskqkrfrr**fn*fiflkwflskill*r
yn*rmftcyrtnm*lcfnaccndi*cctlfcs


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFG734 (VFG734Q) /CSM/VF/VFG7-B/VFG734Q.Seq.d/ 1251 0.0
VFF667 (VFF667Q) /CSM/VF/VFF6-C/VFF667Q.Seq.d/ 1251 0.0
VFC744 (VFC744Q) /CSM/VF/VFC7-B/VFC744Q.Seq.d/ 1251 0.0
VFB866 (VFB866Q) /CSM/VF/VFB8-C/VFB866Q.Seq.d/ 1251 0.0
SFH236 (SFH236Q) /CSM/SF/SFH2-B/SFH236Q.Seq.d/ 1251 0.0
VHM772 (VHM772Q) /CSM/VH/VHM7-C/VHM772Q.Seq.d/ 1249 0.0
VFE385 (VFE385Q) /CSM/VF/VFE3-D/VFE385Q.Seq.d/ 1245 0.0
VFD235 (VFD235Q) /CSM/VF/VFD2-B/VFD235Q.Seq.d/ 1243 0.0
SFG467 (SFG467Q) /CSM/SF/SFG4-C/SFG467Q.Seq.d/ 1243 0.0
VHE424 (VHE424Q) /CSM/VH/VHE4-A/VHE424Q.Seq.d/ 1241 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AJ315489|AJ315489.1 Dictyostelium discoideum mRNA for p80 protein. 1251 0.0 1
AP001119|AP001119.1 Buchnera sp. APS genomic DNA, complete sequence, segment 2/2. 42 0.41 4
CA842637|CA842637.1 iq45c01.y1 HR85 islet Homo sapiens cDNA clone IMAGE: 5' similar to TR:Q9VWD5 Q9VWD5 CG14232 PROTEIN. ;, mRNA sequence. 46 0.54 1
AC135861|AC135861.1 Mus musculus chromosome UNK clone RP23-179J18, WORKING DRAFT SEQUENCE, 63 unordered pieces. 40 0.85 3
AC098421|AC098421.4 Rattus norvegicus clone CH230-2F2, *** SEQUENCING IN PROGRESS ***, 1 ordered piece. 36 1.6 6
AC074161|AC074161.1 Mus musculus clone RP23-32A10, WORKING DRAFT SEQUENCE, 35 unordered pieces. 38 1.6 5
BI929331|BI929331.1 EST549220 tomato flower, 3 - 8 mm buds Lycopersicon esculentum cDNA clone cTOB28D21 5' end, mRNA sequence. 44 2.1 1
AC108402|AC108402.7 Mus musculus clone RP24-141M5, WORKING DRAFT SEQUENCE, 4 ordered pieces. 44 2.1 1
AZ872519|AZ872519.1 2M0185G14R Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC2M0185G14 R, DNA sequence. 44 2.1 1
AC118606|AC118606.4 Mus musculus clone RP24-69F9, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces. 44 2.1 1
dna update 2003. 9.10
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q7YXD4) RecName: Full=Protein P80; AltName: Full=Endosomal memb... 409 e-113
DQ646486_1(DQ646486|pid:none) Chlamydomonas reinhardtii transmem... 73 8e-12
T32929(T32929)hypothetical protein K12C11.3 - Caenorhabditis ele... 49 1e-04
Z68217_7(Z68217|pid:none) Caenorhabditis elegans Cosmid F58G6, c... 49 1e-04
DQ443363_1(DQ443363|pid:none) Bombyx mori copper transporter mRN... 45 0.002
AM910994_672(AM910994|pid:none) Plasmodium knowlesi strain H chr... 42 0.011
DQ459355_1(DQ459355|pid:none) Drosophila melanogaster Ctr1B (Ctr... 41 0.033
FN357414_21(FN357414|pid:none) Schistosoma mansoni genome sequen... 39 0.17
BT081043_1(BT081043|pid:none) Caligus clemensi clone ccle-evs-51... 38 0.28
Z68217_5(Z68217|pid:none) Caenorhabditis elegans Cosmid F58G6, c... 38 0.28
protein update 2009. 6.17
PSORT

psg: 0.75 gvh: 0.49 alm: 0.24 top: 0.53 tms: 0.13 mit: 0.30 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

36.0 %: endoplasmic reticulum
24.0 %: mitochondrial
16.0 %: plasma membrane
8.0 %: extracellular, including cell wall
4.0 %: vacuolar
4.0 %: Golgi
4.0 %: nuclear
4.0 %: vesicles of secretory system

>> prediction for VFB866 is end

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VFB866Z
3' end seq.
>VFB866Z.Seq
----------TTCATCAGTCGATTCAATTAGTAATTTACCAACCACAATGCAATTATTCG
CTGGTATTAAAAGTATTTGCACAGAGATGGCAATGGATGGTTGTGAGAAATGTTCAGGAA
ATTCACCAACTACCACCTGTGATGTTTTGCCAGTTTACTCCTCCCTTTGTATGGCTATGC
CTGATATGTCACAATGTGCCAATTGGACCAAGATGTGTTCCTCCTCTGGTCAACTCTACA
ACTCTCAAATCACATCAGACTATTGTGTCGCCTCTGTTGCTGACGCCGTTCCAATCATGA
GAATGTACTTTCACACTGGTATCTTGGACTATATCCTCTTTAAATCTTGGGTACCAAGAA
CTGACCGTCAATTTGCTGGTTCATGGTTTGCCATCTTTTTCTTTGCTATCTTTTTTGAAC
TCGAAAAAACCCTTAGAAGTATTTTAGAAAAAAGATGGACTCCAAACAAAAAAGATTCAG
AAGATAATAATTTAATTAATTCATCTTTCTTAAGTGGTTCTTATCCAAAATTCTCTTATA
GAGATATAATTAGAGGATGTTTACATGCTATCGAACTAACATGTAGTTATGCTTTAATGC
TTGTTGCAATGACATTTAATGTTGCACTCTTTTTTGCAGTA
Length of 3' end seq. 631
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -