VFB857
Library VF
(Link to library)
Clone ID VFB857
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16311-1
Original site URL
Representative seq. ID VFB857P
(Link to Original site)
Representative DNA sequence
>VFB857 (VFB857Q) /CSM/VF/VFB8-C/VFB857Q.Seq.d/
CACTGTTGGCCTACTGGNATCCAATTATTTTTTAAATATATATATAAATAAAATGAAAGT
TTTATCTGCCTTATGCGTTTTATTAGTCAGTGTTGCCACTGCCAAACAACAATTATCCGA
AGTTGAATACAGAAATGCTTTCACCAATTGGATGATTGCTCACCAAAGACATTATTCATC
AGAAGAGTTCAATGGTCGTTACAATATCTTCAAAGCCAATATGGATTACGTCAATGAATG
GAATACCAAAGGTAGTGAAACCGTTTTAGGTTTAAATGTCTTTGCTGATATCAGCAATGA
AGAATACAGAGCCACCTATTTAGGTACCCCATTCGATGCTTCATCCCTCGAAATGACCGA
ATCCGACAAAATCTTCNAXXXXXXXXXXAACTCAATTAGATCACGGTGTCTTAGCTGTTG
GTTTCGGTACTGGTAGTGGTTCATCTGGTTCCCATGGTGGTTCCCAATCACAATCTGCTG
GTTCAGATTCACAATCTGCTGGTTCAGAATCATCCCAATCTGAATCCGGTTCACAATCAC
AATCTGAATCCGGTTCACAATCACAATCACAATCTGGTTCTCAATCATTCTCTGGTTCCT
TATACTCTGGTTCATACTCTGGTTCCCAATCTGGTTCCCAATCTGGTAACAGCGGTGCTG
CTGTTAAACAAACTGGTGCTGGTTCAGGTTCAGGTTCAGGTTCAGGTTCCGGTTCCGGTT
CAGNTTCAGGTTCAGTCTCAGGTTCAGCTTCAGGTTCCGCCTCAGGTTCCGCCTCAGGTT
CATCAAGTGGTAGCAATAGCAACGGTGGTGTTTATCCAACCGCTGGTGACTACTGGATCG
TTAAAAACTCATGGGGTACCTCATGGGGTATGGATGGTTACATTTTAATGACCAAAGGAA
ATAACAATCAATGCGGTATTGCAACAATGGCCTCACGTCCAACTGCTGTTGCATCACTTT
AAAT
sequence update 2001. 6. 1
Translated Amino Acid sequence
TVGLLXSNYFLNIYINKMKVLSALCVLLVSVATAKQQLSEVEYRNAFTNWMIAHQRHYSS
EEFNGRYNIFKANMDYVNEWNTKGSETVLGLNVFADISNEEYRATYLGTPFDASSLEMTE
SDKIF---

---TQLDHGVLAVGFGTGSGSSGSHGGSQSQSAGSDSQSAGSESSQSESGSQSQSESGSQ
SQSQSGSQSFSGSLYSGSYSGSQSGSQSGNSGAAVKQTGAGSGSGSGSGSGSGSXSGSVS
GSASGSASGSASGSSSGSNSNGGVYPTAGDYWIVKNSWGTSWGMDGYILMTKGNNNQCGI
ATMASRPTAVASL*


Translated Amino Acid sequence (All Frames)
Frame A:
hcwptgiqlffkyiyk*nesficlmrfisqcchcqttiirs*iqkcfhqlddcspktlfi
rrvqwslqylqsqyglrq*meyqr**nrfrfkclc*yqq*riqshlfrypircfiprndr
irqnlx---

---nsirsrclscwfryw*wfiwfpwwfpiticwfrfticwfriipi*irftiti*irft
ititiwfsiilwflilwfilwfpiwfpiw*qrccc*tnwcwfrfrfrfrfrfrfxfrfsl
rfsfrfrlrfrlrfikw*q*qrwclsnrw*lldr*klmgylmgygwlhfndqrk*qsmry
cnngltsncccitln

Frame B:
TVGLLXSNYFLNIYINKMKVLSALCVLLVSVATAKQQLSEVEYRNAFTNWMIAHQRHYSS
EEFNGRYNIFKANMDYVNEWNTKGSETVLGLNVFADISNEEYRATYLGTPFDASSLEMTE
SDKIF---

---TQLDHGVLAVGFGTGSGSSGSHGGSQSQSAGSDSQSAGSESSQSESGSQSQSESGSQ
SQSQSGSQSFSGSLYSGSYSGSQSGSQSGNSGAAVKQTGAGSGSGSGSGSGSGSXSGSVS
GSASGSASGSASGSSSGSNSNGGVYPTAGDYWIVKNSWGTSWGMDGYILMTKGNNNQCGI
ATMASRPTAVASL*

Frame C:
llaywxpiif*iyi*ik*kfylpyafy*svlplpnnnypklntemlspig*lltkdiihq
kssmvvtisskpiwitsmngipkvvkpf*v*msllisamknteppi*vphsmlhpsk*pn
ptkss---

---ln*itvs*llvsvlvvvhlvpmvvpnhnllvqihnllvqnhpnlnpvhnhnlnpvhn
hnhnlvlnhslvpytlvhtlvpnlvpnlvtavlllnklvlvqvqvqvqvpvpvqxqvqsq
vqlqvppqvppqvhqvvaiatvvfiqplvttgslkthgvphgvwmvtf**pkeitinavl
qqwphvqlllhhfk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFB857 (VFB857Q) /CSM/VF/VFB8-C/VFB857Q.Seq.d/ 1275 0.0
VHJ815 (VHJ815Q) /CSM/VH/VHJ8-A/VHJ815Q.Seq.d/ 702 0.0
VHJ755 (VHJ755Q) /CSM/VH/VHJ7-C/VHJ755Q.Seq.d/ 702 0.0
VHI101 (VHI101Q) /CSM/VH/VHI1-A/VHI101Q.Seq.d/ 702 0.0
VHB771 (VHB771Q) /CSM/VH/VHB7-C/VHB771Q.Seq.d/ 702 0.0
VHB683 (VHB683Q) /CSM/VH/VHB6-D/VHB683Q.Seq.d/ 702 0.0
VFO832 (VFO832Q) /CSM/VF/VFO8-B/VFO832Q.Seq.d/ 702 0.0
VFN695 (VFN695Q) /CSM/VF/VFN6-D/VFN695Q.Seq.d/ 702 0.0
VFN594 (VFN594Q) /CSM/VF/VFN5-D/VFN594Q.Seq.d/ 702 0.0
VFN322 (VFN322Q) /CSM/VF/VFN3-A/VFN322Q.Seq.d/ 702 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U72746|U72746.1 Dictyostelium discoideum cysteine proteinase (cprG) mRNA, complete cds. 650 0.0 5
U72745|U72745.1 Dictyostelium discoideum cysteine proteinase (cprF) mRNA, complete cds. 484 0.0 8
L36205|L36205.1 Dictyostelium discoideum cysteine proteinase CP5 mRNA, complete cds. 145 2e-74 5
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence. 153 4e-68 9
L36204|L36204.1 Dictyostelium discoideum cysteine proteinase (CP4) mRNA, complete cds. 117 1e-67 5
X03344|X03344.1 Dictyostelium discoideum mRNA for cysteine proteinase 2. 82 1e-11 1
M16039|M16039.1 Dictyostelium discoideum pst-cath gene encoding pst-cathepsin, complete cds. 72 1e-08 1
AY204513|AY204513.1 Sterkiella histriomuscorum cathepsin H gene, complete cds. 50 7e-04 2
U66910|U66910.1 Dictyostelium discoideum LipA (lipA) gene, partial cds. 56 9e-04 1
AC116979|AC116979.2 Dictyostelium discoideum chromosome 2 map 6357117-6445670 strain AX4, complete sequence. 46 0.002 5
dna update 2003. 9.10
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q94504) RecName: Full=Cysteine proteinase 7; EC=3.4.22... 194 5e-48
(Q94503) RecName: Full=Cysteine proteinase 6; EC=3.4.22... 184 4e-45
L36204_1(L36204|pid:none) Dictyostelium discoideum cysteine prot... 154 4e-36
(P54640) RecName: Full=Cysteine proteinase 5; EC=3.4.22... 151 4e-35
L36205_1(L36205|pid:none) Dictyostelium discoideum cysteine prot... 146 9e-34
(P04989) RecName: Full=Cysteine proteinase 2; EC=3.4.22... 107 6e-22
AC117076_20(AC117076|pid:none) Dictyostelium discoideum chromoso... 106 1e-21
X03930_1(X03930|pid:none) Dictyostelium discoideum 3'gene fragme... 74 6e-12
DQ280314_1(DQ280314|pid:none) Hymeniacidon perlevis cathepsin L ... 72 2e-11
EU143709_1(EU143709|pid:none) Stichopus japonicus cathepsin L mR... 71 6e-11
protein update 2009. 6.17
PSORT

psg: 0.83 gvh: 0.81 alm: 0.28 top: 0.40 tms: 0.07 mit: 0.30 mip: 0.09
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.56 leu: 0.28 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: nuclear
20.0 %: Golgi
20.0 %: cytoplasmic
16.0 %: endoplasmic reticulum
12.0 %: mitochondrial
4.0 %: plasma membrane
4.0 %: peroxisomal

>> prediction for VFB857 is nuc

5' end seq. ID VFB857F
5' end seq.
>VFB857F.Seq
CACTGTTGGCCTACTGGNATCCAATTATTTTTTAAATATATATATAAATAAAATGAAAGT
TTTATCTGCCTTATGCGTTTTATTAGTCAGTGTTGCCACTGCCAAACAACAATTATCCGA
AGTTGAATACAGAAATGCTTTCACCAATTGGATGATTGCTCACCAAAGACATTATTCATC
AGAAGAGTTCAATGGTCGTTACAATATCTTCAAAGCCAATATGGATTACGTCAATGAATG
GAATACCAAAGGTAGTGAAACCGTTTTAGGTTTAAATGTCTTTGCTGATATCAGCAATGA
AGAATACAGAGCCACCTATTTAGGTACCCCATTCGATGCTTCATCCCTCGAAATGACCGA
ATCCGACAAAATCTTCNA----------
Length of 5' end seq. 378
3' end seq. ID VFB857Z
3' end seq.
>VFB857Z.Seq
----------AACTCAATTAGATCACGGTGTCTTAGCTGTTGGTTTCGGTACTGGTAGTG
GTTCATCTGGTTCCCATGGTGGTTCCCAATCACAATCTGCTGGTTCAGATTCACAATCTG
CTGGTTCAGAATCATCCCAATCTGAATCCGGTTCACAATCACAATCTGAATCCGGTTCAC
AATCACAATCACAATCTGGTTCTCAATCATTCTCTGGTTCCTTATACTCTGGTTCATACT
CTGGTTCCCAATCTGGTTCCCAATCTGGTAACAGCGGTGCTGCTGTTAAACAAACTGGTG
CTGGTTCAGGTTCAGGTTCAGGTTCAGGTTCCGGTTCCGGTTCAGNTTCAGGTTCAGTCT
CAGGTTCAGCTTCAGGTTCCGCCTCAGGTTCCGCCTCAGGTTCATCAAGTGGTAGCAATA
GCAACGGTGGTGTTTATCCAACCGCTGGTGACTACTGGATCGTTAAAAACTCATGGGGTA
CCTCATGGGGTATGGATGGTTACATTTTAATGACCAAAGGAAATAACAATCAATGCGGTA
TTGCAACAATGGCCTCACGTCCAACTGCTGTTGCATCACTTTAAAT
Length of 3' end seq. 576
Connected seq. ID VFB857P
Connected seq.
>VFB857P.Seq
CACTGTTGGCCTACTGGNATCCAATTATTTTTTAAATATATATATAAATAAAATGAAAGT
TTTATCTGCCTTATGCGTTTTATTAGTCAGTGTTGCCACTGCCAAACAACAATTATCCGA
AGTTGAATACAGAAATGCTTTCACCAATTGGATGATTGCTCACCAAAGACATTATTCATC
AGAAGAGTTCAATGGTCGTTACAATATCTTCAAAGCCAATATGGATTACGTCAATGAATG
GAATACCAAAGGTAGTGAAACCGTTTTAGGTTTAAATGTCTTTGCTGATATCAGCAATGA
AGAATACAGAGCCACCTATTTAGGTACCCCATTCGATGCTTCATCCCTCGAAATGACCGA
ATCCGACAAAATCTTCNA----------AACTCAATTAGATCACGGTGTCTTAGCTGTTG
GTTTCGGTACTGGTAGTGGTTCATCTGGTTCCCATGGTGGTTCCCAATCACAATCTGCTG
GTTCAGATTCACAATCTGCTGGTTCAGAATCATCCCAATCTGAATCCGGTTCACAATCAC
AATCTGAATCCGGTTCACAATCACAATCACAATCTGGTTCTCAATCATTCTCTGGTTCCT
TATACTCTGGTTCATACTCTGGTTCCCAATCTGGTTCCCAATCTGGTAACAGCGGTGCTG
CTGTTAAACAAACTGGTGCTGGTTCAGGTTCAGGTTCAGGTTCAGGTTCCGGTTCCGGTT
CAGNTTCAGGTTCAGTCTCAGGTTCAGCTTCAGGTTCCGCCTCAGGTTCCGCCTCAGGTT
CATCAAGTGGTAGCAATAGCAACGGTGGTGTTTATCCAACCGCTGGTGACTACTGGATCG
TTAAAAACTCATGGGGTACCTCATGGGGTATGGATGGTTACATTTTAATGACCAAAGGAA
ATAACAATCAATGCGGTATTGCAACAATGGCCTCACGTCCAACTGCTGTTGCATCACTTT
AAAT
Length of connected seq. 954
Full length Seq ID -
Full length Seq. -
Length of full length seq. -