>VFB847 (VFB847Q) /CSM/VF/VFB8-B/VFB847Q.Seq.d/
CACTGTTGGCCTACTGGGTTAGTCACTTCTAAACAACAATAACAATATGAGTCATCGTAA
ATTTGAAGCTCCACGTCACGGTAATCTCGGTTTCAGACCAAGAAAGAGAGCCGCCAGACA
TCAAGGTAAAGTCAAGTCATTCCCAAAGGATGACCGTACCCAAAAAGTCCACTTAACTGC
ATTCATGGGTTACAAAGCTGGTATGACTCACGTTGTCAGAGATTTAGAAAAACCAGGTTC
AAAGATGCACAAAAAAGAAATCGTTGAAGCCGTCACCATCATTGAATGTCCACCAATGTA
CATTGTTGGTTTAGTTGGTTATGTTGAAACCGCTCAAGGTCTCAAAACCTACAAAACCGT
CTGGGCTCAACATTTAAGTGATAACTTCCGTAGAAGATTATACAAAAACTGGTACAAATC
AAAATCAAAGAAAGCTTTCACCAAATACGTTAAACAATACGAAACTGAAGAAGGTAAAAA
ATCAATTGAAGCCTCTCTCCAAGCCATCAAAAAGAGATGTTCAGTCGTXXXXXXXXXXGA
TGTTCAGTCGTCCNGTGTCATTGCTCACACTCAAGTTCACAAATTAAAATTAACTCAAAA
GAAAGCACACGTCCCTTGAAATCCAAGTCAATGGTGGTTCAATCGTCGAAAAAGTTAACT
TTGCTGTTGCCAACTTTGAAAAGACCGTCAACGTCACTGGTGTCTTTGCCGAAAATGAAT
TAATCGATGTTATCGGTGTAACCAAAGGTAAAGGTTTCAATGGTGTCATTAAAAGATGGG
GTGTCCGTAAATTACCAAGAAAGACCCATAAAGGTTTAAGAAAGGTTGCCTGTATTGGTG
CATGGCATCCATCCCGTGTTAGTACCACCGTCCCAAGAGCTGGTCAACTCGGTTACCATC
ATCGTGTCGAAAGAAACAAGAAGATTTACAGAATCGGTCAAGCTCAACCAGAAGACGGTA
AACAAATCTCAACCGGTAAGACTGAATTCGATTTAACTGAAAAGACTATCAATCCAATGG
GTGGTTTCGCTCACTACGGTATGGTTAAACATGAATTCTTAATGCTTAAAGGTTGTGTTG
CTGGTCCAAGAAAGAGAGCCTTAACCTTAAGAAAGAGTATCACCACTCAAACTGGTCGTG
CTGCCCTCGAGAAAATCACTCTCAAATTCATCGATACCTCCAGCAAGTTTGGTCACGGTC
TTCATCAAACCGCTGAAGATAAGATTAAATATTTCGGCGTCAAGAAATCAAGATCAACTA
AGGCTTAAATTCAATAAATTAGATTTC

tvgllg*SLLNNNNNMSHRKFEAPRHGNLGFRPRKRAARHQGKVKSFPKDDRTQKVHLTA
FMGYKAGMTHVVRDLEKPGSKMHKKEIVEAVTIIECPPMYIVGLVGYVETAQGLKTYKTV
WAQHLSDNFRRRLYKNWYKSKSKKAFTKYVKQYETEEGKKSIEASLQAIKKRCSV---

---CSVVXCHCSHSSSQIKINSKESTRPLKSKSMVVQSSKKLTLLLPTLKRPSTSLVSLP
KMN*smlsv*pkvkvsmvslkdgvsvnyqerpikv*erlpvlvhgihpvlvppsqelvns
vtiivsketrrftesvklnqktvnksqpvrlnsi*lkrlsiqwvvslttvwlnmns*clk
vvllvqerep*p*ervsplklvvlpsrkslsnssippaslvtvfikplkirlnisasrnq
dqlrlkfnkldf

Frame A:
hcwptglvtskqq*qyess*i*sstsr*srfqtkkesrqtsr*sqvipkg*pypksplnc
ihglqswydsrcqrfrktrfkdaqkrnr*srhhh*mstnvhcwfswlc*nrsrsqnlqnr
lgstfk**lp*kiiqklvqikikesfhqir*tirn*rr*kin*slspshqkemfsr---

---dvqssxviahtqvhklkltqkkahvp*npsqwwfnrrks*lcccql*kdrqrhwclc
rk*inrcyrcnqr*rfqwch*kmgcp*itkkdp*rfkkgclywcmasipc*yhrpkswst
rlpsscrkkqedlqnrssstrrr*tnlnr*d*irfn*kdyqsngwfrslryg*t*ilna*
rlccwskkeslnlkkeyhhsnwsccprenhsqihrylqqvwsrsssnr*r*d*ifrrqei
kin*glnsin*i

Frame B:
tvgllg*SLLNNNNNMSHRKFEAPRHGNLGFRPRKRAARHQGKVKSFPKDDRTQKVHLTA
FMGYKAGMTHVVRDLEKPGSKMHKKEIVEAVTIIECPPMYIVGLVGYVETAQGLKTYKTV
WAQHLSDNFRRRLYKNWYKSKSKKAFTKYVKQYETEEGKKSIEASLQAIKKRCSV---

---mfsrpvslltlkftn*n*lkrkhtsleiqvnggsivekvnfavanfektvnvtgvfa
enelidvigvtkgkgfngvikrwgvrklprkthkglrkvacigawhpsrvsttvpragql
gyhhrvernkkiyrigqaqpedgkqistgktefdltektinpmggfahygmvkheflmlk
gcvagprkraltlrksittqtgraalekitlkfidtsskfghglhqtaedkikyfgvkks
rstka*iq*irf

Frame C:
llaywvshf*ttiti*vivnlklhvtvisvsdqereppdikvksshsqrmtvpkkst*lh
swvtklv*ltlsei*knqvqrctkkkslkpspslnvhqctllv*lvmlkplkvskptkps
glni*vitsvedytktgtnqnqrklspntlnntklkkvknqlkplskpskrdvqs---

---CSVVXCHCSHSSSQIKINSKESTRPLKSKSMVVQSSKKLTLLLPTLKRPSTSLVSLP
KMN*smlsv*pkvkvsmvslkdgvsvnyqerpikv*erlpvlvhgihpvlvppsqelvns
vtiivsketrrftesvklnqktvnksqpvrlnsi*lkrlsiqwvvslttvwlnmns*clk
vvllvqerep*p*ervsplklvvlpsrkslsnssippaslvtvfikplkirlnisasrnq
dqlrlkfnkldf

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFB847 (VFB847Q) /CSM/VF/VFB8-B/VFB847Q.Seq.d/                       2486   0.0
VFI188 (VFI188Q) /CSM/VF/VFI1-D/VFI188Q.Seq.d/                       1461   0.0
VFF510 (VFF510Q) /CSM/VF/VFF5-A/VFF510Q.Seq.d/                       1461   0.0
VFD410 (VFD410Q) /CSM/VF/VFD4-A/VFD410Q.Seq.d/                       1461   0.0
SFE572 (SFE572Q) /CSM/SF/SFE5-C/SFE572Q.Seq.d/                       1461   0.0
VFG536 (VFG536Q) /CSM/VF/VFG5-B/VFG536Q.Seq.d/                       1457   0.0
VFL835 (VFL835Q) /CSM/VF/VFL8-B/VFL835Q.Seq.d/                       1453   0.0
VFD415 (VFD415Q) /CSM/VF/VFD4-A/VFD415Q.Seq.d/                       1453   0.0
SFD660 (SFD660Q) /CSM/SF/SFD6-C/SFD660Q.Seq.d/                       1453   0.0
VFI216 (VFI216Q) /CSM/VF/VFI2-A/VFI216Q.Seq.d/                       1449   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

L08391|L08391.1 Dictyostelium discoideum ribosomal protein (L3) gene, complete cds.   950  0.0  5
AX489150|AX489150.1 Sequence 6450 from Patent WO02053728.         78  1e-44  10
Z74971|Z74971.1 S.cerevisiae chromosome XV reading frame ORF YOR063w.    70  6e-35  8
J01351|J01351.1 S.cerevisiae ribosomal protein L3 (tcm1) gene.    62  4e-34  8
Z70678|Z70678.1 S.cerevisiae chromosome XV DNA, 54.7 kb region.    70  8e-27  9
AL424946|AL424946.1 clone BA0AB002D01 of library BA0AB from strain CLIB 210 of  Kluyveromyces lactis.    66  4e-19  5
AX765804|AX765804.1 Sequence 13 from Patent WO03008440.           74  4e-19  4
AY052743|AY052743.1 Arabidopsis thaliana At1g43170/F1I21_18 mRNA, complete cds.    74  4e-19  4
AF361101|AF361101.1 Arabidopsis thaliana putative L3 cytoplasmic ribosomal protein (F1I21.L3) mRNA, complete cds.    74  4e-19  4
AY057487|AY057487.1 Arabidopsis thaliana At1g43170/F1I21_18 mRNA, complete cds.    74  6e-19  4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P34113) RecName: Full=60S ribosomal protein L3;  &JC4254(JC4254...   437   0.0
AM471157_1(AM471157|pid:none) Vitis vinifera contig VV78X211407....   280   e-144
EF144245_1(EF144245|pid:none) Populus trichocarpa clone PX0011_L...   280   e-144
DQ241849_1(DQ241849|pid:none) Solanum tuberosum clone 187E04 rib...   284   e-144
BC158279_1(BC158279|pid:none) Xenopus tropicalis hypothetical pr...   283   e-144
AM452874_1(AM452874|pid:none) Vitis vinifera contig VV78X187512....   279   e-143
EF146052_1(EF146052|pid:none) Populus trichocarpa clone WS0115_D...   276   e-143
AJ720292_1(AJ720292|pid:none) Gallus gallus mRNA for hypothetica...   280   e-142
EF145479_1(EF145479|pid:none) Populus trichocarpa clone WS01125_...   275   e-142
AC125473_1(AC125473|pid:none) Medicago truncatula clone mth2-8j1...   277   e-142

 psg: 0.60  gvh: 0.20  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.37  mip: 0.06
 nuc: 0.31  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: nuclear
	 24.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: endoplasmic reticulum

>> prediction for VFB847 is nuc

>VFB847F.Seq
CACTGTTGGCCTACTGGGTTAGTCACTTCTAAACAACAATAACAATATGAGTCATCGTAA
ATTTGAAGCTCCACGTCACGGTAATCTCGGTTTCAGACCAAGAAAGAGAGCCGCCAGACA
TCAAGGTAAAGTCAAGTCATTCCCAAAGGATGACCGTACCCAAAAAGTCCACTTAACTGC
ATTCATGGGTTACAAAGCTGGTATGACTCACGTTGTCAGAGATTTAGAAAAACCAGGTTC
AAAGATGCACAAAAAAGAAATCGTTGAAGCCGTCACCATCATTGAATGTCCACCAATGTA
CATTGTTGGTTTAGTTGGTTATGTTGAAACCGCTCAAGGTCTCAAAACCTACAAAACCGT
CTGGGCTCAACATTTAAGTGATAACTTCCGTAGAAGATTATACAAAAACTGGTACAAATC
AAAATCAAAGAAAGCTTTCACCAAATACGTTAAACAATACGAAACTGAAGAAGGTAAAAA
ATCAATTGAAGCCTCTCTCCAAGCCATCAAAAAGAGATGTTCAGTCGT----------

>VFB847Z.Seq
----------GATGTTCAGTCGTCCNGTGTCATTGCTCACACTCAAGTTCACAAATTAAA
ATTAACTCAAAAGAAAGCACACGTCCCTTGAAATCCAAGTCAATGGTGGTTCAATCGTCG
AAAAAGTTAACTTTGCTGTTGCCAACTTTGAAAAGACCGTCAACGTCACTGGTGTCTTTG
CCGAAAATGAATTAATCGATGTTATCGGTGTAACCAAAGGTAAAGGTTTCAATGGTGTCA
TTAAAAGATGGGGTGTCCGTAAATTACCAAGAAAGACCCATAAAGGTTTAAGAAAGGTTG
CCTGTATTGGTGCATGGCATCCATCCCGTGTTAGTACCACCGTCCCAAGAGCTGGTCAAC
TCGGTTACCATCATCGTGTCGAAAGAAACAAGAAGATTTACAGAATCGGTCAAGCTCAAC
CAGAAGACGGTAAACAAATCTCAACCGGTAAGACTGAATTCGATTTAACTGAAAAGACTA
TCAATCCAATGGGTGGTTTCGCTCACTACGGTATGGTTAAACATGAATTCTTAATGCTTA
AAGGTTGTGTTGCTGGTCCAAGAAAGAGAGCCTTAACCTTAAGAAAGAGTATCACCACTC
AAACTGGTCGTGCTGCCCTCGAGAAAATCACTCTCAAATTCATCGATACCTCCAGCAAGT
TTGGTCACGGTCTTCATCAAACCGCTGAAGATAAGATTAAATATTTCGGCGTCAAGAAAT
CAAGATCAACTAAGGCTTAAATTCAATAAATTAGATTTC

>VFB847P.Seq
CACTGTTGGCCTACTGGGTTAGTCACTTCTAAACAACAATAACAATATGAGTCATCGTAA
ATTTGAAGCTCCACGTCACGGTAATCTCGGTTTCAGACCAAGAAAGAGAGCCGCCAGACA
TCAAGGTAAAGTCAAGTCATTCCCAAAGGATGACCGTACCCAAAAAGTCCACTTAACTGC
ATTCATGGGTTACAAAGCTGGTATGACTCACGTTGTCAGAGATTTAGAAAAACCAGGTTC
AAAGATGCACAAAAAAGAAATCGTTGAAGCCGTCACCATCATTGAATGTCCACCAATGTA
CATTGTTGGTTTAGTTGGTTATGTTGAAACCGCTCAAGGTCTCAAAACCTACAAAACCGT
CTGGGCTCAACATTTAAGTGATAACTTCCGTAGAAGATTATACAAAAACTGGTACAAATC
AAAATCAAAGAAAGCTTTCACCAAATACGTTAAACAATACGAAACTGAAGAAGGTAAAAA
ATCAATTGAAGCCTCTCTCCAAGCCATCAAAAAGAGATGTTCAGTCGT----------GA
TGTTCAGTCGTCCNGTGTCATTGCTCACACTCAAGTTCACAAATTAAAATTAACTCAAAA
GAAAGCACACGTCCCTTGAAATCCAAGTCAATGGTGGTTCAATCGTCGAAAAAGTTAACT
TTGCTGTTGCCAACTTTGAAAAGACCGTCAACGTCACTGGTGTCTTTGCCGAAAATGAAT
TAATCGATGTTATCGGTGTAACCAAAGGTAAAGGTTTCAATGGTGTCATTAAAAGATGGG
GTGTCCGTAAATTACCAAGAAAGACCCATAAAGGTTTAAGAAAGGTTGCCTGTATTGGTG
CATGGCATCCATCCCGTGTTAGTACCACCGTCCCAAGAGCTGGTCAACTCGGTTACCATC
ATCGTGTCGAAAGAAACAAGAAGATTTACAGAATCGGTCAAGCTCAACCAGAAGACGGTA
AACAAATCTCAACCGGTAAGACTGAATTCGATTTAACTGAAAAGACTATCAATCCAATGG
GTGGTTTCGCTCACTACGGTATGGTTAAACATGAATTCTTAATGCTTAAAGGTTGTGTTG
CTGGTCCAAGAAAGAGAGCCTTAACCTTAAGAAAGAGTATCACCACTCAAACTGGTCGTG
CTGCCCTCGAGAAAATCACTCTCAAATTCATCGATACCTCCAGCAAGTTTGGTCACGGTC
TTCATCAAACCGCTGAAGATAAGATTAAATATTTCGGCGTCAAGAAATCAAGATCAACTA
AGGCTTAAATTCAATAAATTAGATTTC