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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFB837
Library VF
(Link to library)
Clone ID VFB837
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14985-1
Original site URL
Representative seq. ID VFB837P
(Link to Original site)
Representative DNA sequence 
>VFB837 (VFB837Q) /CSM/VF/VFB8-B/VFB837Q.Seq.d/
GAAAAAAAAAGATAGATTAATAGATTGATATATGGAAAATTTAAATTAAAGATGTCAGTT
TTACCAAATGATACAATTAAAATTATAGCGGAATCAGCAGGTATTTCAAATTTACCAGAT
GAAATAGCACAACAATTAGCATCGGATGTAGAATATAGAATTAGAGAGATTGCACAAGAA
GCGATTAAATTTATGAAACATTCAAAAAGAGATCACCTTTCAACCGATGATATAAACAAT
GCATTAGGTTTAAGAAATATTGAGCAACTCTATGGCTATAGTTGTAGTGCCAATGATCAC
AGTTTATTAAAATTTTAAAAAACCACAACAACAACACAGGCCATCTATTTTTTAAATGAT
AAAGAGATGACATTTCAAGAGATTGCATCACAACCGTTACCAAAGGTACCACGTGATCCA
TCACTTTCAGCACATTGGTTAGCATTGGAAGGTGTGCAACCATTGATTCCTCAAAATCCA
TCACCCTATGAAATTGAAGAACATCATAAAAATTTACATAAAAAATTCAAGAGTGAGAAA
GCACTTCAATTGGAACAACAAGCACAAGCATTATTAACACAACAAAATAAAGGTAATGAA
AAAAGTXXXXXXXXXXAAAATTTANACAAATTTAGAACTATTAAATAGATTAATGAAAAA
TGGCTCAAGCAATATTAGAAAGTAAACATTTAAAACCTGAATTATATTTACATCAATTAA
TGCCATCAATTTTAACATGTTTAGTTGGTAAGAAATTATGTAATTCACCATCAGAGAATC
ATTGGGAATTAAGAGATTTCGCAGCAAGATTGGTATCATTTGTTTGTAGAAAATTTGGAG
ATGTATATAGTTCATTACAAGGTAGAATAACCAAAACATTAGTACAAACATTACATGATA
CAACCAAACCTTTAACAACTCATTATGGTGCAATCGTTGGTTTATCAGGTTTAGGTAGAA
ATGTTATACAATTTTTATTATTACCTTATGTACCAAAATATTATAAACTCTTGGAACCAG
AATTAAATAATAATTTATCAAATCCAATAAAATCAATGGAAGCCAATAGAGTTTTAAATT
CAATCATAGATGCAACTGGTAAATTCTTAATTTGGGTATCAGAAGGTGAAAATATTCTCT
CAGTTTTAGATTTAAAAGATGATACAACTTCAAAAAAGCAACCAATCTCTTTACCAATCA
TAACAGAGTTTTCACGTGAAAATATTTTAAAAACTTTAAAAATTCAATATCAATCACTTT
TTGATTTATTTGGGAAAAATTATTAGCATATATAAAACCAGATAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
ekkr*inrliygkfklkmsvlpndtikiiaesagisnlpdeiaqqlasdveyrireiaqe
aikfmkhskrdhlstddinnalglrnieqlygyscsandhsllkf*KTTTTTQAIYFLND
KEMTFQEIASQPLPKVPRDPSLSAHWLALEGVQPLIPQNPSPYEIEEHHKNLHKKFKSEK
ALQLEQQAQALLTQQNKGNEKS---

---KIXTNLELLNRLMKNGSSNIRK*tfkt*iiftsinainfnmfsw*eim*ftireslg
ikrfrskigiicl*kiwrci*fitr*nnqnistnit*ynqtfnnslwcnrwfirfr*kcy
tifiitlctkil*tlgtrik**fiksnkingsq*sfkfnhrcnw*ilnlgirr*kyslsf
rfkr*ynfkkatnlftnhnrvft*kyfknfknsisitf*fiwekllayikpd
Translated Amino Acid sequence (All Frames) 
Frame A:
ekkr*inrliygkfklkmsvlpndtikiiaesagisnlpdeiaqqlasdveyrireiaqe
aikfmkhskrdhlstddinnalglrnieqlygyscsandhsllkf*KTTTTTQAIYFLND
KEMTFQEIASQPLPKVPRDPSLSAHWLALEGVQPLIPQNPSPYEIEEHHKNLHKKFKSEK
ALQLEQQAQALLTQQNKGNEKS---

---KIXTNLELLNRLMKNGSSNIRK*tfkt*iiftsinainfnmfsw*eim*ftireslg
ikrfrskigiicl*kiwrci*fitr*nnqnistnit*ynqtfnnslwcnrwfirfr*kcy
tifiitlctkil*tlgtrik**fiksnkingsq*sfkfnhrcnw*ilnlgirr*kyslsf
rfkr*ynfkkatnlftnhnrvft*kyfknfknsisitf*fiwekllayikpd

Frame B:
kkkdrlid*ymenln*rcqfyqmiqlkl*rnqqvfqiyqmk*hnn*hrm*nielerlhkk
rlnl*niqkeitfqpmi*tmh*v*eilsnsmaivvvpmitvy*nfkkpqqqhrpsif*mi
kr*hfkrlhhnryqryhvihhfqhig*hwkvcnh*flkihhpmklkniikiyiknsrvrk
hfnwnnkhkhy*hnkikvmkk---

---kfxqi*ny*id**kmaqaileskhlkpelylhqlmpsiltclvgkklcnspsenhwe
lrdfaarlvsfvcrkfgdvysslqgritktlvqtlhdttkpltthygaivglsglgrnvi
qflllpyvpkyykllepelnnnlsnpiksmeanrvlnsiidatgkfliwvsegenilsvl
dlkddttskkqpislpiitefsrenilktlkiqyqslfdlfgkny*hi*nqi

Frame C:
kkkid**idiwki*ikdvsftk*yn*nysgisryfkftr*nsttisigcri*n*rdctrs
d*iyetfkkrspfnr*ykqcirfkky*atlwl*l*cq*sqfikilknhnnntghlffk**
rddisrdcittvtkgtt*sitfstlvsigrcatidssksitl*n*rts*kft*kiqe*es
tsigttstsiinttk*r**kk---

---nlxkfrtik*inekwlkqy*kvni*nlnyiyin*chqf*hv*lvrnyvihhqriign
*eisqqdwyhlfvenlemyivhykve*pkh*ykhymiqpnl*qlimvqslvyqv*vemly
nfyyylmyqniinswnqn*iiiyqiq*nqwkpief*iqs*mqlvns*fgyqkvkifsqf*
i*kmiqlqksnqslyqs*qsfhvkif*kl*kfninhfliylgkiisiyktr*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFB837 (VFB837Q) /CSM/VF/VFB8-B/VFB837Q.Seq.d/                       2502   0.0
AFL754 (AFL754Q) /CSM/AF/AFL7-C/AFL754Q.Seq.d/                       1316   0.0
AFN565 (AFN565Q) /CSM/AF/AFN5-C/AFN565Q.Seq.d/                       1298   0.0
AFF650 (AFF650Q) /CSM/AF/AFF6-C/AFF650Q.Seq.d/                       1281   0.0
SFB667 (SFB667Q) /CSM/SF/SFB6-C/SFB667Q.Seq.d/                       1267   0.0
AFG548 (AFG548Q) /CSM/AF/AFG5-B/AFG548Q.Seq.d/                       1245   0.0
AFK449 (AFK449Q) /CSM/AF/AFK4-C/AFK449Q.Seq.d/                       1176   0.0
AFH167 (AFH167Q) /CSM/AF/AFH1-C/AFH167Q.Seq.d/                       1174   0.0
AFJ105 (AFJ105Q) /CSM/AF/AFJ1-A/AFJ105Q.Seq.d/                       1172   0.0
CFD818 (CFD818Q) /CSM/CF/CFD8-A/CFD818Q.Seq.d/                       1134   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AE016746|AE016746.1 Staphylococcus epidermidis ATCC 12228, section 3 of 9 of the complete genome.    38  1e-07  13
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    38  2e-05  15
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    34  2e-05  16
AZ538829|AZ538829.1 ENTGD48TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    48  6e-05  3
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    34  6e-04  15
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    36  7e-04  13
AC115579|AC115579.2 Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence.    34  7e-04  11
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    32  0.002  11
D31785|D31785.1 Hansenula wingei mitochondrial DNA, complete sequence.    38  0.002  7
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    36  0.002  14
dna update 2003. 9.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR382129_194(CR382129|pid:none) Yarrowia lipolytica strain CLIB1...   157   6e-37
CU928180_255(CU928180|pid:none) Kluyveromyces thermotolerans str...   150   7e-35
CR380952_301(CR380952|pid:none) Candida glabrata strain CBS138 c...   144   7e-33
FN392319_395(FN392319|pid:none) Pichia pastoris GS115 chromosome...   143   1e-32
CP000496_835(CP000496|pid:none) Pichia stipitis CBS 6054 chromos...   142   3e-32
AK300005_1(AK300005|pid:none) Homo sapiens cDNA FLJ55523 complet...   141   5e-32
BC100108_1(BC100108|pid:none) Rattus norvegicus TAF6 RNA polymer...   141   6e-32
(Q62311) RecName: Full=Transcription initiation factor TFIID sub...   141   6e-32
CR627390_1(CR627390|pid:none) Homo sapiens mRNA; cDNA DKFZp781E2...   141   6e-32
BT021630_1(BT021630|pid:none) Bos taurus TAF6 RNA polymerase II,...   141   6e-32
protein update 2009. 6.17
PSORT 

 psg: 0.85  gvh: 0.52  alm: 0.50  top: 0.27  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: extracellular, including cell wall
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for VFB837 is nuc
5' end seq. ID VFB837F
5' end seq. 
>VFB837F.Seq
GAAAAAAAAAGATAGATTAATAGATTGATATATGGAAAATTTAAATTAAAGATGTCAGTT
TTACCAAATGATACAATTAAAATTATAGCGGAATCAGCAGGTATTTCAAATTTACCAGAT
GAAATAGCACAACAATTAGCATCGGATGTAGAATATAGAATTAGAGAGATTGCACAAGAA
GCGATTAAATTTATGAAACATTCAAAAAGAGATCACCTTTCAACCGATGATATAAACAAT
GCATTAGGTTTAAGAAATATTGAGCAACTCTATGGCTATAGTTGTAGTGCCAATGATCAC
AGTTTATTAAAATTTTAAAAAACCACAACAACAACACAGGCCATCTATTTTTTAAATGAT
AAAGAGATGACATTTCAAGAGATTGCATCACAACCGTTACCAAAGGTACCACGTGATCCA
TCACTTTCAGCACATTGGTTAGCATTGGAAGGTGTGCAACCATTGATTCCTCAAAATCCA
TCACCCTATGAAATTGAAGAACATCATAAAAATTTACATAAAAAATTCAAGAGTGAGAAA
GCACTTCAATTGGAACAACAAGCACAAGCATTATTAACACAACAAAATAAAGGTAATGAA
AAAAGT----------
Length of 5' end seq. 606
3' end seq. ID VFB837Z
3' end seq. 
>VFB837Z.Seq
----------AAAATTTANACAAATTTAGAACTATTAAATAGATTAATGAAAAATGGCTC
AAGCAATATTAGAAAGTAAACATTTAAAACCTGAATTATATTTACATCAATTAATGCCAT
CAATTTTAACATGTTTAGTTGGTAAGAAATTATGTAATTCACCATCAGAGAATCATTGGG
AATTAAGAGATTTCGCAGCAAGATTGGTATCATTTGTTTGTAGAAAATTTGGAGATGTAT
ATAGTTCATTACAAGGTAGAATAACCAAAACATTAGTACAAACATTACATGATACAACCA
AACCTTTAACAACTCATTATGGTGCAATCGTTGGTTTATCAGGTTTAGGTAGAAATGTTA
TACAATTTTTATTATTACCTTATGTACCAAAATATTATAAACTCTTGGAACCAGAATTAA
ATAATAATTTATCAAATCCAATAAAATCAATGGAAGCCAATAGAGTTTTAAATTCAATCA
TAGATGCAACTGGTAAATTCTTAATTTGGGTATCAGAAGGTGAAAATATTCTCTCAGTTT
TAGATTTAAAAGATGATACAACTTCAAAAAAGCAACCAATCTCTTTACCAATCATAACAG
AGTTTTCACGTGAAAATATTTTAAAAACTTTAAAAATTCAATATCAATCACTTTTTGATT
TATTTGGGAAAAATTATTAGCATATATAAAACCAGATAA
Length of 3' end seq. 689
Connected seq. ID VFB837P
Connected seq. 
>VFB837P.Seq
GAAAAAAAAAGATAGATTAATAGATTGATATATGGAAAATTTAAATTAAAGATGTCAGTT
TTACCAAATGATACAATTAAAATTATAGCGGAATCAGCAGGTATTTCAAATTTACCAGAT
GAAATAGCACAACAATTAGCATCGGATGTAGAATATAGAATTAGAGAGATTGCACAAGAA
GCGATTAAATTTATGAAACATTCAAAAAGAGATCACCTTTCAACCGATGATATAAACAAT
GCATTAGGTTTAAGAAATATTGAGCAACTCTATGGCTATAGTTGTAGTGCCAATGATCAC
AGTTTATTAAAATTTTAAAAAACCACAACAACAACACAGGCCATCTATTTTTTAAATGAT
AAAGAGATGACATTTCAAGAGATTGCATCACAACCGTTACCAAAGGTACCACGTGATCCA
TCACTTTCAGCACATTGGTTAGCATTGGAAGGTGTGCAACCATTGATTCCTCAAAATCCA
TCACCCTATGAAATTGAAGAACATCATAAAAATTTACATAAAAAATTCAAGAGTGAGAAA
GCACTTCAATTGGAACAACAAGCACAAGCATTATTAACACAACAAAATAAAGGTAATGAA
AAAAGT----------AAAATTTANACAAATTTAGAACTATTAAATAGATTAATGAAAAA
TGGCTCAAGCAATATTAGAAAGTAAACATTTAAAACCTGAATTATATTTACATCAATTAA
TGCCATCAATTTTAACATGTTTAGTTGGTAAGAAATTATGTAATTCACCATCAGAGAATC
ATTGGGAATTAAGAGATTTCGCAGCAAGATTGGTATCATTTGTTTGTAGAAAATTTGGAG
ATGTATATAGTTCATTACAAGGTAGAATAACCAAAACATTAGTACAAACATTACATGATA
CAACCAAACCTTTAACAACTCATTATGGTGCAATCGTTGGTTTATCAGGTTTAGGTAGAA
ATGTTATACAATTTTTATTATTACCTTATGTACCAAAATATTATAAACTCTTGGAACCAG
AATTAAATAATAATTTATCAAATCCAATAAAATCAATGGAAGCCAATAGAGTTTTAAATT
CAATCATAGATGCAACTGGTAAATTCTTAATTTGGGTATCAGAAGGTGAAAATATTCTCT
CAGTTTTAGATTTAAAAGATGATACAACTTCAAAAAAGCAACCAATCTCTTTACCAATCA
TAACAGAGTTTTCACGTGAAAATATTTTAAAAACTTTAAAAATTCAATATCAATCACTTT
TTGATTTATTTGGGAAAAATTATTAGCATATATAAAACCAGATAA
Length of connected seq. 1295
Full length Seq ID -
Full length Seq. -
Length of full length seq. -