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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFB817
Library VF
(Link to library)
Clone ID VFB817
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16229-1
Original site URL
Representative seq. ID VFB817P
(Link to Original site)
Representative DNA sequence 
>VFB817 (VFB817Q) /CSM/VF/VFB8-A/VFB817Q.Seq.d/
TAAATTAATTAAAAAATTTTTTTGGTAATAAAATATAGAAAATGTCAGGTGCTTTAAAAA
ATTTAGTTAAATCAGTTATTAAAGTTGGTGAAAAAGTTCCAATGGATGTTACTTTAGGTA
AAGCACTCCCACCAGTCGATGGTGTTTGTGCAATGGCACCAAAAGTTTTATCAGGTGAAC
TTTTCAAAGACCGTAAAGTTGTTTTATTCGCTGTTCCAGGTGCTTTTACTCCAACTTGTT
CAGCCAAACATTTACCAGGTTTTATTGAAAAATCAGAAGAAATTAAAAAAAAAGGTATCT
CTGAAATCTTTTGTATTGCCACCAATGACCCATTTGTTATGAGTGCTTGGGGTAAAGACG
TTAATGCAGGTACTGCAGTTACTTTACTTTCAGATGGTAACTCTGAATTCACTAAAAAGA
TTGGACTTGAAATGGATGGTAAGGCTTTCTTACTTGGTGAAGACAGATCTCAAAGATATG
CTATGATCCTTGACTCTGGTGTTGXXXXXXXXXXAAATTAATTAAAAAATTTTTTTGGTA
ATAAAATATAGAAAATGTCAGGTGCTTTAAAAAATTTAGTTAAATCAGTTATTAAAGTTG
GTGAAAAAGTTCCAATGGATGTTACTTTAGGTAAAGCACTCCCACCAGTCGATGGTGTTT
GTGCAATGGCACCAAAAGTTTTATCAGGTTNACNNTNNNAANACTGT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
n*lknffgnki*KMSGALKNLVKSVIKVGEKVPMDVTLGKALPPVDGVCAMAPKVLSGEL
FKDRKVVLFAVPGAFTPTCSAKHLPGFIEKSEEIKKKGISEIFCIATNDPFVMSAWGKDV
NAGTAVTLLSDGNSEFTKKIGLEMDGKAFLLGEDRSQRYAMILDSGV---

---KLIKKFFW**nienvrcfkkfs*isy*sw*kssngcyfr*stptsrwclcngtksfi
rxtxxxl
Translated Amino Acid sequence (All Frames) 
Frame A:
*in*kiflvikyrkcqvl*ki*lnqllklvkkfqwmll*vkhshqsmvfvqwhqkfyqvn
fsktvklfyslfqvlllqlvqpniyqvllknqkklkkkvslksfvlppmthll*vlgvkt
lmqvlqllyfqmvtlnslkrldlkwmvrlsylvktdlkdml*sltlvl---

---KLIKKFFW**nienvrcfkkfs*isy*sw*kssngcyfr*stptsrwclcngtksfi
rxtxxxl

Frame B:
klikkffw**nienvrcfkkfs*isy*sw*kssngcyfr*stptsrwclcngtksfir*t
fqrp*scfircsrcfysnlfsqtftrfy*kirrn*kkryl*nllychq*picyeclg*rr
*crycsyftfrw*l*ih*kdwt*ngw*gfltw*rqiskicydp*lwc---

---n*lknffgnki*kmsgalknlvksvikvgekvpmdvtlgkalppvdgvcamapkvls
gxxxxxc

Frame C:
n*lknffgnki*KMSGALKNLVKSVIKVGEKVPMDVTLGKALPPVDGVCAMAPKVLSGEL
FKDRKVVLFAVPGAFTPTCSAKHLPGFIEKSEEIKKKGISEIFCIATNDPFVMSAWGKDV
NAGTAVTLLSDGNSEFTKKIGLEMDGKAFLLGEDRSQRYAMILDSGV---

---in*kiflvikyrkcqvl*ki*lnqllklvkkfqwmll*vkhshqsmvfvqwhqkfyq
vxxxxt
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFB817 (VFB817Q) /CSM/VF/VFB8-A/VFB817Q.Seq.d/                       1172   0.0
VHJ449 (VHJ449Q) /CSM/VH/VHJ4-C/VHJ449Q.Seq.d/                        894   0.0
VHF501 (VHF501Q) /CSM/VH/VHF5-A/VHF501Q.Seq.d/                        894   0.0
VSD213 (VSD213Q) /CSM/VS/VSD2-A/VSD213Q.Seq.d/                        888   0.0
VSD185 (VSD185Q) /CSM/VS/VSD1-D/VSD185Q.Seq.d/                        888   0.0
SSG643 (SSG643Q) /CSM/SS/SSG6-B/SSG643Q.Seq.d/                        882   0.0
VSA450 (VSA450Q) /CSM/VS/VSA4-C/VSA450Q.Seq.d/                        819   0.0
SSB215 (SSB215Q) /CSM/SS/SSB2-A/SSB215Q.Seq.d/                        819   0.0
SSF753 (SSF753Q) /CSM/SS/SSF7-C/SSF753Q.Seq.d/                        811   0.0
VSH776 (VSH776Q) /CSM/VS/VSH7-D/VSH776Q.Seq.d/                        805   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BD283099|BD283099.1 Flea head, nerve cord, hindgut and malpighian tubule nucleic acid molecules, proteins and uses thereof.    48  3e-06  2
BF779954|BF779954.1 3254-25 hindgut and Malpighian tubule cDNA library Ctenocephalides felis cDNA clone 3254-25, mRNA sequence.    48  3e-06  2
BQ476340|BQ476340.1 curculio3e06.b Curculio glandium cDNA Curculio glandium cDNA clone curculio3e06 5', mRNA sequence.    46  0.60  1
BQ476622|BQ476622.1 curculio3e06.g Curculio glandium cDNA Curculio glandium cDNA clone curculio3e06 3', mRNA sequence.    46  0.60  1
AC101848|AC101848.8 Mus musculus, clone RP23-267J24, complete sequence.    46  0.60  4
AC101907|AC101907.3 Mus musculus clone RP24-273O7, WORKING DRAFT SEQUENCE, 2 ordered pieces.    36  0.62  6
BX511010|BX511010.4 Zebrafish DNA sequence from clone CH211-79L20 in linkage group 16.    38  0.98  5
BX004781|BX004781.7 Zebrafish DNA sequence from clone CH211-149G8 in linkage group 1.    44  1.3  3
AC124404|AC124404.4 Mus musculus chromosome 12 clone RP24-371M10, complete sequence.    44  2.4  3
AQ962901|AQ962901.1 LERGI20TR LERG Arabidopsis thaliana genomic clone LERGI20, DNA sequence.    34  2.7  2
dna update 2003. 9. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000655_172(CP000655|pid:none) Polynucleobacter necessarius sub...   119   9e-26
CP001010_161(CP001010|pid:none) Polynucleobacter necessarius sub...   117   3e-25
CP000613_3568(CP000613|pid:none) Rhodospirillum centenum SW, com...   114   2e-24
CP000248_1994(CP000248|pid:none) Novosphingobium aromaticivorans...   114   3e-24
BX640426_146(BX640426|pid:none) Bordetella parapertussis strain ...   112   8e-24
AE005673_3368(AE005673|pid:none) Caulobacter crescentus CB15, co...   111   2e-23
AE015451_2674(AE015451|pid:none) Pseudomonas putida KT2440 compl...   111   2e-23
CP000790_1683(CP000790|pid:none) Vibrio harveyi ATCC BAA-1116 ch...   109   7e-23
CP000712_3003(CP000712|pid:none) Pseudomonas putida F1, complete...   109   7e-23
CU207211_2650(CU207211|pid:none) Herminiimonas arsenicoxydans ch...   109   9e-23
protein update 2009. 6.17
PSORT 

 psg: 0.59  gvh: 0.46  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 32.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for VFB817 is cyt
5' end seq. ID VFB817F
5' end seq. 
>VFB817F.Seq
TAAATTAATTAAAAAATTTTTTTGGTAATAAAATATAGAAAATGTCAGGTGCTTTAAAAA
ATTTAGTTAAATCAGTTATTAAAGTTGGTGAAAAAGTTCCAATGGATGTTACTTTAGGTA
AAGCACTCCCACCAGTCGATGGTGTTTGTGCAATGGCACCAAAAGTTTTATCAGGTGAAC
TTTTCAAAGACCGTAAAGTTGTTTTATTCGCTGTTCCAGGTGCTTTTACTCCAACTTGTT
CAGCCAAACATTTACCAGGTTTTATTGAAAAATCAGAAGAAATTAAAAAAAAAGGTATCT
CTGAAATCTTTTGTATTGCCACCAATGACCCATTTGTTATGAGTGCTTGGGGTAAAGACG
TTAATGCAGGTACTGCAGTTACTTTACTTTCAGATGGTAACTCTGAATTCACTAAAAAGA
TTGGACTTGAAATGGATGGTAAGGCTTTCTTACTTGGTGAAGACAGATCTCAAAGATATG
CTATGATCCTTGACTCTGGTGTTG----------
Length of 5' end seq. 504
3' end seq. ID VFB817Z
3' end seq. 
>VFB817Z.Seq
----------AAATTAATTAAAAAATTTTTTTGGTAATAAAATATAGAAAATGTCAGGTG
CTTTAAAAAATTTAGTTAAATCAGTTATTAAAGTTGGTGAAAAAGTTCCAATGGATGTTA
CTTTAGGTAAAGCACTCCCACCAGTCGATGGTGTTTGTGCAATGGCACCAAAAGTTTTAT
CAGGTTNACNNTNNNAANACTGT
Length of 3' end seq. 193
Connected seq. ID VFB817P
Connected seq. 
>VFB817P.Seq
TAAATTAATTAAAAAATTTTTTTGGTAATAAAATATAGAAAATGTCAGGTGCTTTAAAAA
ATTTAGTTAAATCAGTTATTAAAGTTGGTGAAAAAGTTCCAATGGATGTTACTTTAGGTA
AAGCACTCCCACCAGTCGATGGTGTTTGTGCAATGGCACCAAAAGTTTTATCAGGTGAAC
TTTTCAAAGACCGTAAAGTTGTTTTATTCGCTGTTCCAGGTGCTTTTACTCCAACTTGTT
CAGCCAAACATTTACCAGGTTTTATTGAAAAATCAGAAGAAATTAAAAAAAAAGGTATCT
CTGAAATCTTTTGTATTGCCACCAATGACCCATTTGTTATGAGTGCTTGGGGTAAAGACG
TTAATGCAGGTACTGCAGTTACTTTACTTTCAGATGGTAACTCTGAATTCACTAAAAAGA
TTGGACTTGAAATGGATGGTAAGGCTTTCTTACTTGGTGAAGACAGATCTCAAAGATATG
CTATGATCCTTGACTCTGGTGTTG----------AAATTAATTAAAAAATTTTTTTGGTA
ATAAAATATAGAAAATGTCAGGTGCTTTAAAAAATTTAGTTAAATCAGTTATTAAAGTTG
GTGAAAAAGTTCCAATGGATGTTACTTTAGGTAAAGCACTCCCACCAGTCGATGGTGTTT
GTGCAATGGCACCAAAAGTTTTATCAGGTTNACNNTNNNAANACTGT
Length of connected seq. 697
Full length Seq ID -
Full length Seq. -
Length of full length seq. -