NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM205
Library AF
(Link to library)
Clone ID AFM205
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>AFM205 (AFM205Q) /CSM/AF/AFM2-A/AFM205Q.Seq.d/
XXXXXXXXXXGATGCTCAAGATGCAACATTAATTTATCAATCACAAATTGTTAATGGTTT
AGCAAAAGATGGTAATGATTTATATATGTCAACTTATGATGGTAAATTCTTAAAAGGTAA
AGCTGATTGTTCAAATTGTACAAAAGATCAATTGATTGAAATTGGTAGTGATACTGATGC
AAGTCATTTAACTGATTTNTTAGTCGAGGGTGATTTAATTGTATTCTCTCATTCAAATGG
TATAACTGCTTATTCAAAATCTGCTAACTCTAATCAAGCCATTAAATTAATCACTGGTGA
AAATGTAATTTCAATGGTTTCAAAGGGTGGTGTCATTTATTATACAACTAAAGATGGTAT
TGTTAAATCAATTGGTATTGATGGTAAAAATGGTAAAACTATTTATACACCAACTTCCAA
TCATCAATGTCAAGCTGCTGTTGGTTTCCAATCAATTGATGGTGTTTGTAAAGGTAAAAC
CTTATGGTATAATGGTATTCCAACTTGTACTCCATTAGGTGAAGGTGGTATCCCTGCTCA
ATGTTTCACAAGTGTTTAANNGNCCCCCCANTGNATGTT
sequence update 2009. 4. 3
Translated Amino Acid sequence 
---AQDATLIYQSQIVNGLAKDGNDLYMSTYDGKFLKGKADCSNCTKDQLIEIGSDTDAS
HLTDXLVEGDLIVFSHSNGITAYSKSANSNQAIKLITGENVISMVSKGGVIYYTTKDGIV
KSIGIDGKNGKTIYTPTSNHQCQAAVGFQSIDGVCKGKTLWYNGIPTCTPLGEGGIPAQC
FTSV*xxpxxm
Translated Amino Acid sequence (All Frames) 
Frame A:
---mlkmqh*finhkllmv*qkmvmiyicqlmmvns*kvklivqivqkin*lklvvilmq
vi*lix*srvi*lysliqmv*lliqnlltlikpln*slvkm*fqwfqrvvsfiiqlkmvl
lnqlvlmvkmvklfihqlpiinvklllvsnqlmvfvkvkpygimvfqlvlh*vkvvslln
vsqvfxxppxxc


Frame B:
---csrcninlsitnc*wfskrw**fiyvnl*w*ilkr*s*lfklykrsid*nw**y*ck
sfn*fxsrg*fncilsfkwynclfkic*l*ssh*inhw*kcnfngfkgwchllyn*rwyc
*inwy*w*kw*nylytnfqssmssccwfpin*wcl*r*nlmv*wysnlysir*rwypcsm
fhkclxxppxxv


Frame C:
---AQDATLIYQSQIVNGLAKDGNDLYMSTYDGKFLKGKADCSNCTKDQLIEIGSDTDAS
HLTDXLVEGDLIVFSHSNGITAYSKSANSNQAIKLITGENVISMVSKGGVIYYTTKDGIV
KSIGIDGKNGKTIYTPTSNHQCQAAVGFQSIDGVCKGKTLWYNGIPTCTPLGEGGIPAQC
FTSV*xxpxxm
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFM205 (AFM205Q) /CSM/AF/AFM2-A/AFM205Q.Seq.d/                       1092   0.0
CFJ676 (CFJ676Q) /CSM/CF/CFJ6-D/CFJ676Q.Seq.d/                       1076   0.0
AFB889 (AFB889Q) /CSM/AF/AFB8-D/AFB889Q.Seq.d/                       1057   0.0
CFH584 (CFH584Q) /CSM/CF/CFH5-D/CFH584Q.Seq.d/                        983   0.0
CHD243 (CHD243Q) /CSM/CH/CHD2-B/CHD243Q.Seq.d/                        922   0.0
SSG726 (SSG726Q) /CSM/SS/SSG7-B/SSG726Q.Seq.d/                        858   0.0
AFK877 (AFK877Q) /CSM/AF/AFK8-D/AFK877Q.Seq.d/                        313   2e-84
SLA429 (SLA429Q) /CSM/SL/SLA4-B/SLA429Q.Seq.d/                         40   0.036
VHL191 (VHL191Q) /CSM/VH/VHL1-D/VHL191Q.Seq.d/                         38   0.14
SSM111 (SSM111Q) /CSM/SS/SSM1-A/SSM111Q.Seq.d/                         38   0.14
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ346803) Dictyostelium discoideum cDNA clone:dda25i02, 3' ...  1090   0.0    1
(AY392439) Dictyostelium discoideum P-selectin gene, complet...  1074   0.0    1
(AC115684) Dictyostelium discoideum chromosome 2 map 3108975...  1074   0.0    1
(BJ376004) Dictyostelium discoideum cDNA clone:ddc20g20, 3' ...  1074   0.0    1
(BJ341005) Dictyostelium discoideum cDNA clone:dda4b24, 3' e...  1055   0.0    1
(BJ374930) Dictyostelium discoideum cDNA clone:ddc16g21, 3' ...   983   0.0    1
(BJ376382) Dictyostelium discoideum cDNA clone:ddc28e12, 3' ...   922   0.0    1
(BJ343372) Dictyostelium discoideum cDNA clone:dda22j20, 3' ...   313   4e-81  1
(AU073341) Dictyostelium discoideum slug cDNA, clone SSG726.      194   3e-45  1
(AC116955) Dictyostelium discoideum chromosome 2 map 5455881...    44   1e-07  3
dna update 2009. 4. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY392438_1(AY392438|pid:none) Dictyostelium discoideum tenascin ...   160   2e-38
AC116955_5(AC116955|pid:none) Dictyostelium discoideum chromosom...   116   4e-25
CP000444_1469(CP000444|pid:none) Shewanella sp. MR-7, complete g...    37   0.36
AY337469_1(AY337469|pid:none) Escherichia coli strain 87 flagell...    35   1.1
CP000539_2331(CP000539|pid:none) Acidovorax sp. JS42, complete g...    34   2.4
CP000667_360(CP000667|pid:none) Salinispora tropica CNB-440, com...    34   3.1
AC099401_15(AC099401|pid:none) Oryza sativa (japonica cultivar-g...    33   4.0
AP008209_384(AP008209|pid:none) Oryza sativa (japonica cultivar-...    33   4.0
CP000474_2482(CP000474|pid:none) Arthrobacter aurescens TC1, com...    33   4.0
A81591(A81591) polymorphic membrane protein G family CP0307 [imp...    33   5.2
protein update 2009. 4. 5
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM205 is

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFM205Z
3' end seq. 
>AFM205Z.Seq
XXXXXXXXXXGATGCTCAAGATGCAACATTAATTTATCAATCACAAATTGTTAATGGTTT
AGCAAAAGATGGTAATGATTTATATATGTCAACTTATGATGGTAAATTCTTAAAAGGTAA
AGCTGATTGTTCAAATTGTACAAAAGATCAATTGATTGAAATTGGTAGTGATACTGATGC
AAGTCATTTAACTGATTTNTTAGTCGAGGGTGATTTAATTGTATTCTCTCATTCAAATGG
TATAACTGCTTATTCAAAATCTGCTAACTCTAATCAAGCCATTAAATTAATCACTGGTGA
AAATGTAATTTCAATGGTTTCAAAGGGTGGTGTCATTTATTATACAACTAAAGATGGTAT
TGTTAAATCAATTGGTATTGATGGTAAAAATGGTAAAACTATTTATACACCAACTTCCAA
TCATCAATGTCAAGCTGCTGTTGGTTTCCAATCAATTGATGGTGTTTGTAAAGGTAAAAC
CTTATGGTATAATGGTATTCCAACTTGTACTCCATTAGGTGAAGGTGGTATCCCTGCTCA
ATGTTTCACAAGTGTTTAANNGNCCCCCCANTGNATGTT
Length of 3' end seq. 579
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -