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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFB805
Library VF
(Link to library)
Clone ID VFB805
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16149-1
Original site URL
Representative seq. ID VFB805P
(Link to Original site)
Representative DNA sequence 
>VFB805 (VFB805Q) /CSM/VF/VFB8-A/VFB805Q.Seq.d/
AGCCTAACTACCACCATGTCACAAAAAGTGTACATGTTATATTATCTCTCTCATAATAAT
TTCAATCACCCATATAAATCATATATCCATTAATAATCACTATCAATCTTTATCACTAAA
CATCAATCTTTAGGAATAATCAATATAGAGTACATAATAGAGAGAGAAAATATACATAGA
GATGATTAGCAAATCCTTCGAACAGAATTGGATTAAACCATATATATCATGTATCATATC
AATTGATATCATAATATATATTTAAAGCTTAATTAATAGGTGAATAAATCAAACATAGAT
TTCGAATAGTTTTTTCCATTTTAAATGGAAACTTTTTTTCAATTTTAATGAAAAAACGAA
AGGAATCTATGGTCAAAGATTTTTTATCACACTTCGTTTTTTTTTTTTAATTATTTAAAA
TTTACTACTAACAATXXXXXXXXXXTTATGGTTTCCCNAATCTCAAATCAATCAAAGAAT
TNATNTACAAGAGAGGTCACTTAAAGATTGACGGTCAAAGAATCCCATTAACCTCTAACG
ATATGGTTGAAAAACAACTCGGCAAATTCGGTATCATTTGCGTTGAAGAATTCATCCACG
AAATCACCACTTGCGGTAAACACTTCAAACAAGTTAACAACTCTTTATGGCCATTCAAAT
TAAACTGTCCAAGAGGTGGTTTCAACATGAAGAAAACTCCATTCCTCCAAGGTGGTGATG
CTGGTAACCGTGAACACTTAATCAACAACCTCATGCCACAGCAATGAACTAAATTGGATA
AAATAAAT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
sltttmsqkvymlyylshnnfnhpyksyih**slsifitkhqslgiinieyiierenihr
dd*qilrteld*tiyimyhin*yhniylkln**vnksnidfe*ffpf*metffqf**KNE
RNLWSKIFYHTSFFFFNYLKFTTNN---

---YGFPNLKSIKEXXYKRGHLKIDGQRIPLTSNDMVEKQLGKFGIICVEEFIHEITTCG
KHFKQVNNSLWPFKLNCPRGGFNMKKTPFLQGGDAGNREHLINNLMPQQ*tkldkin
Translated Amino Acid sequence (All Frames) 
Frame A:
sltttmsqkvymlyylshnnfnhpyksyih**slsifitkhqslgiinieyiierenihr
dd*qilrteld*tiyimyhin*yhniylkln**vnksnidfe*ffpf*metffqf**KNE
RNLWSKIFYHTSFFFFNYLKFTTNN---

---lwfpxsqinqrixxqerslkd*rsknpinl*ryg*kttrqiryhlr*rihprnhhlr
*tlqts*qlfmaiqiklskrwfqheensipprw*cw*p*tlnqqphatamn*ig*nk

Frame B:
a*lppchkkctcyiisliiisithinhisinnhyqslslninl*e*si*st**rekiyie
misksfeqnwikpyisciisidiiiyi*slinr*inqt*isnsffhfkwklffnfnektk
giygqrffitlrffflii*nlllt---

---YGFPNLKSIKEXXYKRGHLKIDGQRIPLTSNDMVEKQLGKFGIICVEEFIHEITTCG
KHFKQVNNSLWPFKLNCPRGGFNMKKTPFLQGGDAGNREHLINNLMPQQ*tkldkin

Frame C:
pnyhhvtksvhvilsls**fqspi*iiypliitinlyh*tsifrnnqyrvhnrerkyt*r
*lanpsnriglnhiyhvsyqlis*yifka*lige*ikhrfrivfsilngnffsilmkkrk
esmvkdflshfvfff*lfkiyy*q---

---mvsxisnqsknxxtrevt*rltvkesh*pltiwlknnsansvsfalknsstksplav
ntsnklttlyghsn*tvqevvst*rklhsskvvmlvtvnt*sttschsnelnwik*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFB805 (VFB805Q) /CSM/VF/VFB8-A/VFB805Q.Seq.d/                       1372   0.0
VSE202 (VSE202Q) /CSM/VS/VSE2-A/VSE202Q.Seq.d/                        599   e-170
VSB764 (VSB764Q) /CSM/VS/VSB7-C/VSB764Q.Seq.d/                        599   e-170
VSB140 (VSB140Q) /CSM/VS/VSB1-B/VSB140Q.Seq.d/                        599   e-170
SLC696 (SLC696Q) /CSM/SL/SLC6-D/SLC696Q.Seq.d/                        599   e-170
FC-AX16 (FC-AX16Q) /CSM/FC/FC-AX/FC-AX16Q.Seq.d/                      599   e-170
FC-AN05 (FC-AN05Q) /CSM/FC/FC-AN/FC-AN05Q.Seq.d/                      599   e-170
FC-AK21 (FC-AK21Q) /CSM/FC/FC-AK/FC-AK21Q.Seq.d/                      599   e-170
FC-AJ11 (FC-AJ11Q) /CSM/FC/FC-AJ/FC-AJ11Q.Seq.d/                      599   e-170
FC-AI09 (FC-AI09Q) /CSM/FC/FC-AI/FC-AI09Q.Seq.d/                      599   e-170
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence.   658  0.0  5
X14909|X14909.1 Dictyolstelium discoideum mRNA for ribosomal protein L7.   579  e-172  3
CD811859|CD811859.1 BN10.019C23F020121 BN10 Brassica napus cDNA clone BN10019C23, mRNA sequence.    50  8e-04  2
CD811622|CD811622.1 BN10.001C18F011207 BN10 Brassica napus cDNA clone BN10001C18, mRNA sequence.    50  8e-04  2
BM063968|BM063968.1 KS01061E10 KS01 Capsicum annuum cDNA, mRNA sequence.    42  0.001  2
CD830167|CD830167.1 BN40.044I24F011221 BN40 Brassica napus cDNA clone BN40044I24, mRNA sequence.    50  0.001  2
BZ304008|BZ304008.1 KD2711.q1 Kluyveromyces delphensis Random Genomic Library Kluyveromyces delphensis genomic clone KD2711, DNA sequence.    38  0.003  2
T38706|T38706.1 EST104241 S. cerevisiae strain X2180-1A Saccharomyces cerevisiae cDNA 3' end, mRNA sequence.    46  0.006  2
T37582|T37582.1 EST102752 S. cerevisiae strain X2180-1A Saccharomyces cerevisiae cDNA 3' end, mRNA sequence.    46  0.007  2
T37832|T37832.1 EST103102 S. cerevisiae strain X2180-1A Saccharomyces cerevisiae cDNA 3' end, mRNA sequence.    46  0.007  2
dna update 2003. 9. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P11874) RecName: Full=60S ribosomal protein L7;  &R5DO7(S04849;...   212   1e-53
AC114263_33(AC114263|pid:none) Dictyostelium discoideum chromoso...   212   1e-53
BT074739_1(BT074739|pid:none) Osmerus mordax clone omor-eva-519-...   142   1e-32
BT082258_1(BT082258|pid:none) Anoplopoma fimbria clone afim-evh-...   141   3e-32
EF408834_1(EF408834|pid:none) Poecilia reticulata ribosomal prot...   140   4e-32
AF175983_1(AF175983|pid:none) Rana sylvatica ribosomal protein L...   140   5e-32
BT043873_1(BT043873|pid:none) Salmo salar clone HM4_1876 ribosom...   140   6e-32
FJ997635_1(FJ997635|pid:none) Penaeus monodon ribosomal protein ...   140   6e-32
BT045943_1(BT045943|pid:none) Salmo salar clone ssal-rgf-537-123...   139   8e-32
AY909398_1(AY909398|pid:none) Siniperca chuatsi clone C123 ribos...   139   8e-32
protein update 2009. 6.17
PSORT 

 psg: 0.89  gvh: 0.24  alm: 0.45  top: 0.57  tms: 0.00  mit: 0.28  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall

>> prediction for VFB805 is nuc
5' end seq. ID VFB805F
5' end seq. 
>VFB805F.Seq
AGCCTAACTACCACCATGTCACAAAAAGTGTACATGTTATATTATCTCTCTCATAATAAT
TTCAATCACCCATATAAATCATATATCCATTAATAATCACTATCAATCTTTATCACTAAA
CATCAATCTTTAGGAATAATCAATATAGAGTACATAATAGAGAGAGAAAATATACATAGA
GATGATTAGCAAATCCTTCGAACAGAATTGGATTAAACCATATATATCATGTATCATATC
AATTGATATCATAATATATATTTAAAGCTTAATTAATAGGTGAATAAATCAAACATAGAT
TTCGAATAGTTTTTTCCATTTTAAATGGAAACTTTTTTTCAATTTTAATGAAAAAACGAA
AGGAATCTATGGTCAAAGATTTTTTATCACACTTCGTTTTTTTTTTTTAATTATTTAAAA
TTTACTACTAACAAT----------
Length of 5' end seq. 435
3' end seq. ID VFB805Z
3' end seq. 
>VFB805Z.Seq
----------TTATGGTTTCCCNAATCTCAAATCAATCAAAGAATTNATNTACAAGAGAG
GTCACTTAAAGATTGACGGTCAAAGAATCCCATTAACCTCTAACGATATGGTTGAAAAAC
AACTCGGCAAATTCGGTATCATTTGCGTTGAAGAATTCATCCACGAAATCACCACTTGCG
GTAAACACTTCAAACAAGTTAACAACTCTTTATGGCCATTCAAATTAAACTGTCCAAGAG
GTGGTTTCAACATGAAGAAAACTCCATTCCTCCAAGGTGGTGATGCTGGTAACCGTGAAC
ACTTAATCAACAACCTCATGCCACAGCAATGAACTAAATTGGATAAAATAAAT
Length of 3' end seq. 343
Connected seq. ID VFB805P
Connected seq. 
>VFB805P.Seq
AGCCTAACTACCACCATGTCACAAAAAGTGTACATGTTATATTATCTCTCTCATAATAAT
TTCAATCACCCATATAAATCATATATCCATTAATAATCACTATCAATCTTTATCACTAAA
CATCAATCTTTAGGAATAATCAATATAGAGTACATAATAGAGAGAGAAAATATACATAGA
GATGATTAGCAAATCCTTCGAACAGAATTGGATTAAACCATATATATCATGTATCATATC
AATTGATATCATAATATATATTTAAAGCTTAATTAATAGGTGAATAAATCAAACATAGAT
TTCGAATAGTTTTTTCCATTTTAAATGGAAACTTTTTTTCAATTTTAATGAAAAAACGAA
AGGAATCTATGGTCAAAGATTTTTTATCACACTTCGTTTTTTTTTTTTAATTATTTAAAA
TTTACTACTAACAAT----------TTATGGTTTCCCNAATCTCAAATCAATCAAAGAAT
TNATNTACAAGAGAGGTCACTTAAAGATTGACGGTCAAAGAATCCCATTAACCTCTAACG
ATATGGTTGAAAAACAACTCGGCAAATTCGGTATCATTTGCGTTGAAGAATTCATCCACG
AAATCACCACTTGCGGTAAACACTTCAAACAAGTTAACAACTCTTTATGGCCATTCAAAT
TAAACTGTCCAAGAGGTGGTTTCAACATGAAGAAAACTCCATTCCTCCAAGGTGGTGATG
CTGGTAACCGTGAACACTTAATCAACAACCTCATGCCACAGCAATGAACTAAATTGGATA
AAATAAAT
Length of connected seq. 778
Full length Seq ID -
Full length Seq. -
Length of full length seq. -