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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFB788
Library VF
(Link to library)
Clone ID VFB788
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14924-1
Original site URL
Representative seq. ID VFB788P
(Link to Original site)
Representative DNA sequence 
>VFB788 (VFB788Q) /CSM/VF/VFB7-D/VFB788Q.Seq.d/
ATTTTCATTCCATCATTCAAAAAATCATTTTATTTTATTTTTTTTTTTTATTNGTTTAAA
TTTTTNGATAAAAAANGGNGGTNNAAAANGANGTTNTCAAGAAGATTNTTAAATAAAAAT
CCTNTTCAATTTTTGAATAANAATNGTAAAAANGTNTCXXXXXXXXXXCTCCCATCAAAT
CCAAATGAACCAGCCATGAGAGAAGCATTCGATTCACCATCTCGTGAAGATGATGTCTTG
GATCAAATCATTCCAGACGATCCAAACAAACCATACGATATGAAAGAAGTCATTGAACGT
ATCGTTGATGAAGGAGAATTCTTTGAGATTCAACCAGAGTTTGCCAAGAATATCATCGTT
GGTTATGCTCGTATGGAGGGTCGTACTGTTGGTTTCGTTGCCAATCAACCAAAAGAACTC
GCAGGTTGTTTAGACATTGATGCCTCTGTTAAGGCCGCCCGTTTTGTACGTTTCTGTGAT
TGTTTCAATATTCCAATTGTAACTCTCATCGATGTTCCAGGTTTCCTTCCAGGTACTAAT
CAAGAACACAATGGTATCATTAGACATGGTGCTAAATTATTGTATGCTTACGCTGAAGCT
ACCGTTCCAAAGATCTCAATTATCACTCGTAAAGCTTATGGTGGTGCCTATGATGTTATG
TCATCCAAACATCTTCGTGGTGATACCAATTACTCTTGGCCAACCGGTCAAATCGCTGTC
ATGGGTTCAAAAGGTGCCGTAGAAATCATCTTTAGAGGCAAAGGTGACATCAAAGAACAA
GAACAAATTTACAATGATAAATTTGCTAATCCATTACCAGCTGCTCGTAGAGGTTTCATT
GATGATATCATCCCACCAAGAATGTCTCGTCAATACATTTGTGAAGATTTAGAAATTCTT
AAAAATAAAAAATTATCAAATCCAACTAAAAAACAG
sequence update 2001. 6. 1
Translated Amino Acid sequence 
IFIPSFKKSFYFIFFFYXFKFXDKKXXXKXXXSRRXLNKNPXQFLNXNXKXV---

---LPSNPNEPAMREAFDSPSREDDVLDQIIPDDPNKPYDMKEVIERIVDEGEFFEIQPE
FAKNIIVGYARMEGRTVGFVANQPKELAGCLDIDASVKAARFVRFCDCFNIPIVTLIDVP
GFLPGTNQEHNGIIRHGAKLLYAYAEATVPKISIITRKAYGGAYDVMSSKHLRGDTNYSW
PTGQIAVMGSKGAVEIIFRGKGDIKEQEQIYNDKFANPLPAARRGFIDDIIPPRMSRQYI
CEDLEILKNKKLSNPTKKQ
Translated Amino Acid sequence (All Frames) 
Frame A:
IFIPSFKKSFYFIFFFYXFKFXDKKXXXKXXXSRRXLNKNPXQFLNXNXKXV---

---LPSNPNEPAMREAFDSPSREDDVLDQIIPDDPNKPYDMKEVIERIVDEGEFFEIQPE
FAKNIIVGYARMEGRTVGFVANQPKELAGCLDIDASVKAARFVRFCDCFNIPIVTLIDVP
GFLPGTNQEHNGIIRHGAKLLYAYAEATVPKISIITRKAYGGAYDVMSSKHLRGDTNYSW
PTGQIAVMGSKGAVEIIFRGKGDIKEQEQIYNDKFANPLPAARRGFIDDIIPPRMSRQYI
CEDLEILKNKKLSNPTKKQ

Frame B:
fsfhhsknhfilffffixlnfxikxggxkxxxqedx*ikilfnf*ixxvkxx---

---shqiqmnqp*ekhsihhlvkmmswiksfqtiqtnhti*kkslnvslmkenslrfnqs
lprisslvmlvwrvvllvslpinqknsqvv*tlmpllrppvlyvsvivsifql*lssmfq
vsfqvlikntmvsldmvlnycmltlklpfqrsqlslvklmvvpmmlchpnifvvipitlg
qpvkslswvqkvp*kssleakvtsknknkftminllihyqllvevslmisshqeclvntf
vki*kflkiknyqiqlkn

Frame C:
fhsiiqkiilfyffflxv*ifx*kxxvxxxvxkkixk*ksxsife*xx*kxx---

---piksk*tshersirftis*r*clgsnhsrrskqtiryersh*tyr**rril*dstrv
cqeyhrwlcsyggsycwfrcqstkrtrrlfrh*clc*grpfctfl*lfqysncnshrcsr
fpsry*srtqwyh*twc*iivclr*syrskdlnyhs*slwwcl*cyviqtssw*yqllla
nrsnrchgfkrcrrnhl*rqr*hqrtrtnlq**ic*sitscs*rfh**yhptknvssihl
*rfrns*k*kiiksn*kt
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFB788 (VFB788Q) /CSM/VF/VFB7-D/VFB788Q.Seq.d/                       1564   0.0
AFN568 (AFN568Q) /CSM/AF/AFN5-C/AFN568Q.Seq.d/                       1451   0.0
AFC638 (AFC638Q) /CSM/AF/AFC6-B/AFC638Q.Seq.d/                       1449   0.0
VFJ408 (VFJ408Q) /CSM/VF/VFJ4-A/VFJ408Q.Seq.d/                       1437   0.0
VFD409 (VFD409Q) /CSM/VF/VFD4-A/VFD409Q.Seq.d/                       1435   0.0
VFA525 (VFA525Q) /CSM/VF/VFA5-B/VFA525Q.Seq.d/                       1435   0.0
AFB682 (AFB682Q) /CSM/AF/AFB6-D/AFB682Q.Seq.d/                       1435   0.0
VFC741 (VFC741Q) /CSM/VF/VFC7-B/VFC741Q.Seq.d/                       1427   0.0
VFB764 (VFB764Q) /CSM/VF/VFB7-C/VFB764Q.Seq.d/                       1411   0.0
AFG547 (AFG547Q) /CSM/AF/AFG5-B/AFG547Q.Seq.d/                       1411   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115592|AC115592.2 Dictyostelium discoideum chromosome 2 map 1-125959 strain AX4, complete sequence.  1451  0.0  3
BI703996|BI703996.1 kt56d06.y1 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q20676 Q20676 CODED FOR BY C. ELEGANS CDNA YK74F9.5. [1] ;, mRNA sequence.    90  3e-24  3
BI773222|BI773222.1 kq65a04.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to TR:Q20676 Q20676 CODED FOR BY C. ELEGANS CDNA YK74F9.5. [1] ;, mRNA sequence.    82  8e-21  3
BI772967|BI772967.1 kq13h03.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to TR:Q20676 Q20676 CODED FOR BY C. ELEGANS CDNA YK74F9.5. [1] ;, mRNA sequence.    82  1e-20  3
BI773057|BI773057.1 kq34b01.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to TR:Q20676 Q20676 CODED FOR BY C. ELEGANS CDNA YK74F9.5. [1] ;, mRNA sequence.    82  2e-16  2
BI772844|BI772844.1 kp54a04.y1 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to TR:Q20676 Q20676 CODED FOR BY C. ELEGANS CDNA YK74F9.5. [1] ;, mRNA sequence.    82  1e-15  3
Z24754|Z24754.1 V.parvula methylmalonyl-CoA decarboxylase gene, complete CDS.    54  5e-12  3
L22208|L22208.1 Veillonella parvula methylmalonyl-CoA decarboxylase alpha, beta, delta, epsilon, gamma subunits gene, complete cds.    54  5e-12  3
AV992461|AV992461.1 Ciona intestinalis cDNA, clone:cicl59b19, 5' end, single read.    72  2e-09  2
BW281767|BW281767.1 Ciona intestinalis cDNA, clone:cigd018a02, 5' end, single read.    72  2e-09  2
dna update 2003. 9. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115592_6(AC115592|pid:none) Dictyostelium discoideum chromosom...   520   e-146
CU459003_2449(CU459003|pid:none) Magnetospirillum gryphiswaldens...   354   2e-96
AP007255_4243(AP007255|pid:none) Magnetospirillum magneticum AMB...   353   6e-96
CP000613_401(CP000613|pid:none) Rhodospirillum centenum SW, comp...   351   2e-95
CP000529_2361(CP000529|pid:none) Polaromonas naphthalenivorans C...   349   9e-95
AE005673_1962(AE005673|pid:none) Caulobacter crescentus CB15, co...   346   6e-94
BC118686_1(BC118686|pid:none) Xenopus tropicalis hypothetical pr...   346   7e-94
CP000316_2124(CP000316|pid:none) Polaromonas sp. JS666, complete...   344   2e-93
BC067640_1(BC067640|pid:none) Danio rerio propionyl Coenzyme A c...   342   1e-92
CP000555_1016(CP000555|pid:none) Methylibium petroleiphilum PM1,...   341   2e-92
protein update 2009. 6.17
PSORT 

 psg: 0.98  gvh: 0.33  alm: 0.38  top: 0.60  tms: 0.00  mit: 0.33  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 24.0 %: nuclear
	 16.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  8.0 %: vacuolar

>> prediction for VFB788 is cyt
5' end seq. ID VFB788F
5' end seq. 
>VFB788F.Seq
ATTTTCATTCCATCATTCAAAAAATCATTTTATTTTATTTTTTTTTTTTATTNGTTTAAA
TTTTTNGATAAAAAANGGNGGTNNAAAANGANGTTNTCAAGAAGATTNTTAAATAAAAAT
CCTNTTCAATTTTTGAATAANAATNGTAAAAANGTNTC----------
Length of 5' end seq. 158
3' end seq. ID VFB788Z
3' end seq. 
>VFB788Z.Seq
----------CTCCCATCAAATCCAAATGAACCAGCCATGAGAGAAGCATTCGATTCACC
ATCTCGTGAAGATGATGTCTTGGATCAAATCATTCCAGACGATCCAAACAAACCATACGA
TATGAAAGAAGTCATTGAACGTATCGTTGATGAAGGAGAATTCTTTGAGATTCAACCAGA
GTTTGCCAAGAATATCATCGTTGGTTATGCTCGTATGGAGGGTCGTACTGTTGGTTTCGT
TGCCAATCAACCAAAAGAACTCGCAGGTTGTTTAGACATTGATGCCTCTGTTAAGGCCGC
CCGTTTTGTACGTTTCTGTGATTGTTTCAATATTCCAATTGTAACTCTCATCGATGTTCC
AGGTTTCCTTCCAGGTACTAATCAAGAACACAATGGTATCATTAGACATGGTGCTAAATT
ATTGTATGCTTACGCTGAAGCTACCGTTCCAAAGATCTCAATTATCACTCGTAAAGCTTA
TGGTGGTGCCTATGATGTTATGTCATCCAAACATCTTCGTGGTGATACCAATTACTCTTG
GCCAACCGGTCAAATCGCTGTCATGGGTTCAAAAGGTGCCGTAGAAATCATCTTTAGAGG
CAAAGGTGACATCAAAGAACAAGAACAAATTTACAATGATAAATTTGCTAATCCATTACC
AGCTGCTCGTAGAGGTTTCATTGATGATATCATCCCACCAAGAATGTCTCGTCAATACAT
TTGTGAAGATTTAGAAATTCTTAAAAATAAAAAATTATCAAATCCAACTAAAAAACAG
Length of 3' end seq. 768
Connected seq. ID VFB788P
Connected seq. 
>VFB788P.Seq
ATTTTCATTCCATCATTCAAAAAATCATTTTATTTTATTTTTTTTTTTTATTNGTTTAAA
TTTTTNGATAAAAAANGGNGGTNNAAAANGANGTTNTCAAGAAGATTNTTAAATAAAAAT
CCTNTTCAATTTTTGAATAANAATNGTAAAAANGTNTC----------CTCCCATCAAAT
CCAAATGAACCAGCCATGAGAGAAGCATTCGATTCACCATCTCGTGAAGATGATGTCTTG
GATCAAATCATTCCAGACGATCCAAACAAACCATACGATATGAAAGAAGTCATTGAACGT
ATCGTTGATGAAGGAGAATTCTTTGAGATTCAACCAGAGTTTGCCAAGAATATCATCGTT
GGTTATGCTCGTATGGAGGGTCGTACTGTTGGTTTCGTTGCCAATCAACCAAAAGAACTC
GCAGGTTGTTTAGACATTGATGCCTCTGTTAAGGCCGCCCGTTTTGTACGTTTCTGTGAT
TGTTTCAATATTCCAATTGTAACTCTCATCGATGTTCCAGGTTTCCTTCCAGGTACTAAT
CAAGAACACAATGGTATCATTAGACATGGTGCTAAATTATTGTATGCTTACGCTGAAGCT
ACCGTTCCAAAGATCTCAATTATCACTCGTAAAGCTTATGGTGGTGCCTATGATGTTATG
TCATCCAAACATCTTCGTGGTGATACCAATTACTCTTGGCCAACCGGTCAAATCGCTGTC
ATGGGTTCAAAAGGTGCCGTAGAAATCATCTTTAGAGGCAAAGGTGACATCAAAGAACAA
GAACAAATTTACAATGATAAATTTGCTAATCCATTACCAGCTGCTCGTAGAGGTTTCATT
GATGATATCATCCCACCAAGAATGTCTCGTCAATACATTTGTGAAGATTTAGAAATTCTT
AAAAATAAAAAATTATCAAATCCAACTAAAAAACAG
Length of connected seq. 926
Full length Seq ID -
Full length Seq. -
Length of full length seq. -