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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFB776
Library VF
(Link to library)
Clone ID VFB776
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13978-1
Original site URL
Representative seq. ID VFB776P
(Link to Original site)
Representative DNA sequence 
>VFB776 (VFB776Q) /CSM/VF/VFB7-D/VFB776Q.Seq.d/
ACTGTTGGCCTACTGGNATATTAAATTTTTGTTTATTTATTTCATTTATAAAAAACTACA
TATATATATATATATAGATAATGTCAGAAACACAAGAATTTTGGTTAATTTCAGCTCCAA
ACCTTCCAGGTGCTGACATTTTTGACCAAGTCAATCAAAAGACTGCCAAAGAAAATAGTT
TATCTGAAAACAAAAAATTTAATACACCAGCATTAAGAGTTGGTACTCTCAATTCATTGA
TTACACTCAATGATGAATTACAAAAAATCGATACCATTGTAGAATCTACAACCAAAAAGA
TTGCCAGACAATTAGTCGATTTAGTTGGAACCAAACCAGGTAAAGATAAGAGTCTTTCAA
TCAATGGTCACACCATTCCACAATACCTTCAACAATTTGCCTGGGATGATGCCAAATATA
ACTTAAAATTATCATTACAAGAAATNGTCGAAAAAATTTCATCTGCAGTCTCAAAGATTG
ATGATGATTTAAAAATCAAACNAGTGAATATTCXXXXXXXXXXTCGTTGTTATTCCAAAN
CAATCCGAAAAAGAATTTTTAGCCTGTTATGAAACCATTTCAGATTTTGTNCTTGGAAGA
TCAGCTAAAAGAGTTGCCCAAGATAATGATTATTTCTTATACAGTGTAATTTTATTCAAG
AAATTCTATGAAAACTTTAAAACTAAAATCATTGAAAAGAAATGGGTAGTAANAGATTTC
AAATTAGAAGATAATNAACCAACTCAAGAAAGATCAAAATTAACAGAAGATAAAAAGAAT
TGTAGAACATCATTAATTCGTTGGTGTAGATTAAATTTCCCANAGGCTTTTATGGCATGG
GTTCACTTAAAAGTTGTTANAGTATTCGTTGAATCTGNACTTAGATTTGGTATTCCATTC
AACTTCCAAGCTATCCTCATGAAACCACAAAAAGGTGCCGATAAAAAGGTTCGTGATATA
CTTTTCGATCAATTCAAATATTTAGGTTCTGCTCATATCTCTGGTAAGAATGAAACTGAN
GATTCCGAAAAATTCNATCCATATATTTCCGTTTCAGGAATTGGGAAAATTAATATAATC
NTTAGNCTGCAAACTAAAATAAATAAATAAATAAAAAAAAAATAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
cwptgilnfclfisfiknyiyiyi*IMSETQEFWLISAPNLPGADIFDQVNQKTAKENSL
SENKKFNTPALRVGTLNSLITLNDELQKIDTIVESTTKKIARQLVDLVGTKPGKDKSLSI
NGHTIPQYLQQFAWDDAKYNLKLSLQEXVEKISSAVSKIDDDLKIKXVNI---

---VVIPXQSEKEFLACYETISDFVLGRSAKRVAQDNDYFLYSVILFKKFYENFKTKIIE
KKWVVXDFKLEDNXPTQERSKLTEDKKNCRTSLIRWCRLNFPXAFMAWVHLKVVXVFVES
XLRFGIPFNFQAILMKPQKGADKKVRDILFDQFKYLGSAHISGKNETXDSEKFXPYISVS
GIGKINIIXXLQTKINK*ikkk*
Translated Amino Acid sequence (All Frames) 
Frame A:
tvgllxy*ifvylfhl*kttyiyiyr*cqkhknfg*fqlqtfqvltfltksikrlpkkiv
ylktknlihqh*elvlsih*lhsmmnykksipl*nlqpkrlpdn*si*lepnqvkirvfq
smvtpfhntfnnlpgmmpnit*nyhykkxskkfhlqsqrlmmi*ksnx*if---

---sllfqxnpkknf*pvmkpfqilxledqlkelpkimiisytv*fysrnsmktlklksl
krng**xisn*kixnqlkkdqn*qkikrivehh*fvgvd*isxrllwhgft*kllxysln
lxldlvfhstsklss*nhkkvpikrfviyfsinsni*vllislvrmklxipknsihifpf
qelgkli*slxcklk*ink*kkn

Frame B:
llaywxikflfiyfiykklhiyiyidnvrntrilvnfsskpsrc*hf*psqskdcqrk*f
i*kqki*ytsikswysqfidytq**itknryhcriynqkdcqtisrfswnqtr*r*esfn
qwshhstipsticlg*cqi*lkiiitrnxrknficslkd***fknqtsey---

---rcyskxirkrifsll*nhfrfcxwkis*kscpr**lfliqcnfiqeil*kl*n*nh*
kemgsxrfqirr*xtnsrkikinrr*kel*niinslv*ikfpxgfygmgslkscxsir*i
xt*iwysiqlpsyphettkrcr*kgs*ytfrsiqifrfcsylw*e*n*xfrkixsiyfrf
rnwen*ynx*xan*nk*inkkki

Frame C:
cwptgilnfclfisfiknyiyiyi*IMSETQEFWLISAPNLPGADIFDQVNQKTAKENSL
SENKKFNTPALRVGTLNSLITLNDELQKIDTIVESTTKKIARQLVDLVGTKPGKDKSLSI
NGHTIPQYLQQFAWDDAKYNLKLSLQEXVEKISSAVSKIDDDLKIKXVNI---

---VVIPXQSEKEFLACYETISDFVLGRSAKRVAQDNDYFLYSVILFKKFYENFKTKIIE
KKWVVXDFKLEDNXPTQERSKLTEDKKNCRTSLIRWCRLNFPXAFMAWVHLKVVXVFVES
XLRFGIPFNFQAILMKPQKGADKKVRDILFDQFKYLGSAHISGKNETXDSEKFXPYISVS
GIGKINIIXXLQTKINK*ikkk*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFB776 (VFB776Q) /CSM/VF/VFB7-D/VFB776Q.Seq.d/                       1881   0.0
SFF755 (SFF755Q) /CSM/SF/SFF7-C/SFF755Q.Seq.d/                       1061   0.0
SFE581 (SFE581Q) /CSM/SF/SFE5-D/SFE581Q.Seq.d/                       1041   0.0
SFE554 (SFE554Q) /CSM/SF/SFE5-C/SFE554Q.Seq.d/                       1029   0.0
SFB812 (SFB812Q) /CSM/SF/SFB8-A/SFB812Q.Seq.d/                       1021   0.0
AFL423 (AFL423Q) /CSM/AF/AFL4-A/AFL423Q.Seq.d/                       1005   0.0
VFJ873 (VFJ873Q) /CSM/VF/VFJ8-D/VFJ873Q.Seq.d/                        999   0.0
VSA308 (VSA308Q) /CSM/VS/VSA3-A/VSA308Q.Seq.d/                        997   0.0
VFL735 (VFL735Q) /CSM/VF/VFL7-B/VFL735Q.Seq.d/                        993   0.0
CHB338 (CHB338Q) /CSM/CH/CHB3-B/CHB338Q.Seq.d/                        993   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

L41839|L41839.1 Dictyostelium discoideum H(+)-transporting ATPase chain C mRNA, complete cds.  1005  0.0  4
AC138342|AC138342.4 Mus musculus chromosome 12 clone RP23-37C23 map 12, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    50  0.062  1
AC006278|AC006278.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    40  0.16  6
AC099718|AC099718.2 Mus musculus clone RP23-368E4, WORKING DRAFT SEQUENCE, 1 unordered piece.    50  0.22  4
AL611930|AL611930.24 Mouse DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP23-58H5.    48  0.24  1
Z95559|Z95559.1 Caenorhabditis elegans YAC Y41E3.                 36  0.32  9
AL805948|AL805948.9 Mouse DNA sequence from clone RP23-18C13 on chromosome 2.    50  0.39  4
BM552183|BM552183.1 AGENCOURT_6543521 NIH_MGC_71 Homo sapiens cDNA clone IMAGE:5549550 5', mRNA sequence.    38  0.57  2
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.           42  0.67  13
AC079863|AC079863.11 Homo sapiens 3q BAC RP11-95L3 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    36  0.78  7
dna update 2003. 9. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54648) RecName: Full=V-type proton ATPase subunit C;          ...   343   8e-93
CP000587_404(CP000587|pid:none) Ostreococcus lucimarinus CCE9901...    99   3e-41
FN392320_258(FN392320|pid:none) Pichia pastoris GS115 chromosome...   108   3e-32
CU928167_51(CU928167|pid:none) Kluyveromyces thermotolerans stra...    90   4e-31
(Q6P4Y9) RecName: Full=V-type proton ATPase subunit C 1;        ...   137   9e-31
(Q5FVI6) RecName: Full=V-type proton ATPase subunit C 1;        ...   135   3e-30
(P21282) RecName: Full=V-type proton ATPase subunit C 1;        ...   134   4e-30
(Q9Z1G3) RecName: Full=V-type proton ATPase subunit C 1;        ...   134   8e-30
(P21283) RecName: Full=V-type proton ATPase subunit C 1;        ...   132   2e-29
J05682_1(J05682|pid:none) Human subunit C of V-ATPase (vat C) mR...   132   2e-29
protein update 2009. 6.17
PSORT 

 psg: 0.75  gvh: 0.41  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 32.0 %: nuclear
	 16.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for VFB776 is cyt
5' end seq. ID VFB776F
5' end seq. 
>VFB776F.Seq
ACTGTTGGCCTACTGGNATATTAAATTTTTGTTTATTTATTTCATTTATAAAAAACTACA
TATATATATATATATAGATAATGTCAGAAACACAAGAATTTTGGTTAATTTCAGCTCCAA
ACCTTCCAGGTGCTGACATTTTTGACCAAGTCAATCAAAAGACTGCCAAAGAAAATAGTT
TATCTGAAAACAAAAAATTTAATACACCAGCATTAAGAGTTGGTACTCTCAATTCATTGA
TTACACTCAATGATGAATTACAAAAAATCGATACCATTGTAGAATCTACAACCAAAAAGA
TTGCCAGACAATTAGTCGATTTAGTTGGAACCAAACCAGGTAAAGATAAGAGTCTTTCAA
TCAATGGTCACACCATTCCACAATACCTTCAACAATTTGCCTGGGATGATGCCAAATATA
ACTTAAAATTATCATTACAAGAAATNGTCGAAAAAATTTCATCTGCAGTCTCAAAGATTG
ATGATGATTTAAAAATCAAACNAGTGAATATTC----------
Length of 5' end seq. 513
3' end seq. ID VFB776Z
3' end seq. 
>VFB776Z.Seq
----------TCGTTGTTATTCCAAANCAATCCGAAAAAGAATTTTTAGCCTGTTATGAA
ACCATTTCAGATTTTGTNCTTGGAAGATCAGCTAAAAGAGTTGCCCAAGATAATGATTAT
TTCTTATACAGTGTAATTTTATTCAAGAAATTCTATGAAAACTTTAAAACTAAAATCATT
GAAAAGAAATGGGTAGTAANAGATTTCAAATTAGAAGATAATNAACCAACTCAAGAAAGA
TCAAAATTAACAGAAGATAAAAAGAATTGTAGAACATCATTAATTCGTTGGTGTAGATTA
AATTTCCCANAGGCTTTTATGGCATGGGTTCACTTAAAAGTTGTTANAGTATTCGTTGAA
TCTGNACTTAGATTTGGTATTCCATTCAACTTCCAAGCTATCCTCATGAAACCACAAAAA
GGTGCCGATAAAAAGGTTCGTGATATACTTTTCGATCAATTCAAATATTTAGGTTCTGCT
CATATCTCTGGTAAGAATGAAACTGANGATTCCGAAAAATTCNATCCATATATTTCCGTT
TCAGGAATTGGGAAAATTAATATAATCNTTAGNCTGCAAACTAAAATAAATAAATAAATA
AAAAAAAAATAA
Length of 3' end seq. 602
Connected seq. ID VFB776P
Connected seq. 
>VFB776P.Seq
ACTGTTGGCCTACTGGNATATTAAATTTTTGTTTATTTATTTCATTTATAAAAAACTACA
TATATATATATATATAGATAATGTCAGAAACACAAGAATTTTGGTTAATTTCAGCTCCAA
ACCTTCCAGGTGCTGACATTTTTGACCAAGTCAATCAAAAGACTGCCAAAGAAAATAGTT
TATCTGAAAACAAAAAATTTAATACACCAGCATTAAGAGTTGGTACTCTCAATTCATTGA
TTACACTCAATGATGAATTACAAAAAATCGATACCATTGTAGAATCTACAACCAAAAAGA
TTGCCAGACAATTAGTCGATTTAGTTGGAACCAAACCAGGTAAAGATAAGAGTCTTTCAA
TCAATGGTCACACCATTCCACAATACCTTCAACAATTTGCCTGGGATGATGCCAAATATA
ACTTAAAATTATCATTACAAGAAATNGTCGAAAAAATTTCATCTGCAGTCTCAAAGATTG
ATGATGATTTAAAAATCAAACNAGTGAATATTC----------TCGTTGTTATTCCAAAN
CAATCCGAAAAAGAATTTTTAGCCTGTTATGAAACCATTTCAGATTTTGTNCTTGGAAGA
TCAGCTAAAAGAGTTGCCCAAGATAATGATTATTTCTTATACAGTGTAATTTTATTCAAG
AAATTCTATGAAAACTTTAAAACTAAAATCATTGAAAAGAAATGGGTAGTAANAGATTTC
AAATTAGAAGATAATNAACCAACTCAAGAAAGATCAAAATTAACAGAAGATAAAAAGAAT
TGTAGAACATCATTAATTCGTTGGTGTAGATTAAATTTCCCANAGGCTTTTATGGCATGG
GTTCACTTAAAAGTTGTTANAGTATTCGTTGAATCTGNACTTAGATTTGGTATTCCATTC
AACTTCCAAGCTATCCTCATGAAACCACAAAAAGGTGCCGATAAAAAGGTTCGTGATATA
CTTTTCGATCAATTCAAATATTTAGGTTCTGCTCATATCTCTGGTAAGAATGAAACTGAN
GATTCCGAAAAATTCNATCCATATATTTCCGTTTCAGGAATTGGGAAAATTAATATAATC
NTTAGNCTGCAAACTAAAATAAATAAATAAATAAAAAAAAAATAA
Length of connected seq. 1115
Full length Seq ID -
Full length Seq. -
Length of full length seq. -