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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFB752
Library VF
(Link to library)
Clone ID VFB752
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14717-1
Original site URL
Representative seq. ID VFB752E
(Link to Original site)
Representative DNA sequence 
>VFB752 (VFB752Q) /CSM/VF/VFB7-C/VFB752Q.Seq.d/
AAAAAAAATAGCTAAAAAATAAAAATTAATTGTATTAATACAAATATATATAAATAAAAT
GACAAAAACAACAATGAAAGCAGCAGCATTTACACAGAAGAATGGTAAAATAGAGATTAT
TGAGTTACCAATCCCAGAACCAACTCAAGGTTGGATTAGAATTAAAGTTCACGCCTGTGG
TGTTTGTCAAGGTGAAAATGTTTGTAAACATGGTGTAATGGGTAATTCATTTCCAAGAGT
TCCAGGACATGAGGTTGTAGGTGAAATTGATAAATTAGGAGAAGGTGTTTGTAATGAAGA
ATATAAAATTGGTGAATTTGTAGGTGTTGGTTGGTTTGGTGGTAATCAATGTGGTAAATG
TGAAACATGTTTAGAGAATGAATGGAAACATTGTAAGAAAAGTAAACACTTGTGGTGTTA
CTTATGATGGTGGTTATGCAGAGTATATGATTGCACCAATTAGTGCACTTGTTAAAATAC
CAAAAGGAATGGACCCACTTGAAGCTGCACCATTGTTATGTGCAGGTGTAACAGTTTATA
ATTCATTTAGACATCAAGACATTAAAGTAGGTTCATTGGTTGGTGTTACAGGTATTGGTG
GTTTAGGTCATTATGCAATTCAATTCTGTAAGAAAATGGGTTACCAAGTGATTGCAATGT
CAAGTGGTAATTCAAAAGAACAACTCTCAAAAGAATTGGGTGCAGATTATTATGTTGATA
TGTCAAAGGATAATTACATTCAAGAGATTCAATCAATTGGTTCAGTTAAATGTATTTTAG
CAACTGCACCAATTGCATCAACTGTTCAAGGTTTATTAGAGTCTTTAGGTATAAATGGTA
AATTGGTGATTTTGGCTGCTTTCCATGAACCATTCCATGCAGATTCATTGACAATGATTG
GTGGTTCTAAATCAATCGTTGGTTGGGCTTCTGGTGATAATCGTGATTCTCTTGATACTT
TAAATTTTGCTCGTAATAATAATATTAAATCATTAGTAAATACTTTCCCATGGAAAAAGC
AAATGAAGCTTTTAAAATATGGTCAAGCAAAATTTAGACATGT
sequence update 2001. 6. 9
Translated Amino Acid sequence 
kk*lknkn*ly*ykyi*ik*qkqq*kqqhlhrrmvk*rllsyqsqnqlkvglelkftpvv
fvkvkmfvnmv*wvihfqefqdmrl*vklin*ekvfvmkniklvnl*vlvglvvinvvnv
khv*RMNGNIVRKVNTCGVTYDGGYAEYMIAPISALVKIPKGMDPLEAAPLLCAGVTVYN
SFRHQDIKVGSLVGVTGIGGLGHYAIQFCKKMGYQVIAMSSGNSKEQLSKELGADYYVDM
SKDNYIQEIQSIGSVKCILATAPIASTVQGLLESLGINGKLVILAAFHEPFHADSLTMIG
GSKSIVGWASGDNRDSLDTLNFARNNNIKSLVNTFPWKKQMKLLKYGQAKFRH
Translated Amino Acid sequence (All Frames) 
Frame A:
kkns*kikincintniyk*ndknnnesssiyteew*nrdy*vtnprtnsrld*n*ssrlw
clsr*kcl*twcng*fiskssrt*gcr*n**irrrcl**ri*nw*icrcwlvww*smw*m
*nmfre*metl*ek*tlvvllmmvvmqsi*lhqlvhllkyqkewthlklhhcyvqv*qfi
ihldiktlk*vhwlvlqvlvv*vimqfnsvrkwvtk*lqcqvviqknnsqknwvqiimli
cqriitfkrfnqlvqlnvf*qlhqlhqlfkvy*sl*v*mvnw*fwllsmnhsmqih*q*l
vvlnqslvgllviivillil*illviiilnh**ilshgksk*sf*nmvkqnldm


Frame B:
kkiakk*klivliqiyinkmtkttmkaaaftqkngkieiielpipeptqgwirikvhacg
vcqgenvckhgvmgnsfprvpghevvgeidklgegvcneeykigefvgvgwfggnqcgkc
etclenewkhckkskhlwcyl*wwlcrvydctn*ctc*ntkrngpt*sctivmcrcnsl*
fi*tsrh*srfigwcyrywwfrslcnsil*englpsdcnvkw*fkrttlkrigcrllc*y
vkg*lhsrdsinwfs*myfsnctncincsrfirvfrykw*igdfgcfp*tipcrfidndw
wf*inrwlgfw**s*fs*yfkfcs***y*iiskyfpmekaneafkiwsski*tc


Frame C:
kk*lknkn*ly*ykyi*ik*qkqq*kqqhlhrrmvk*rllsyqsqnqlkvglelkftpvv
fvkvkmfvnmv*wvihfqefqdmrl*vklin*ekvfvmkniklvnl*vlvglvvinvvnv
khv*RMNGNIVRKVNTCGVTYDGGYAEYMIAPISALVKIPKGMDPLEAAPLLCAGVTVYN
SFRHQDIKVGSLVGVTGIGGLGHYAIQFCKKMGYQVIAMSSGNSKEQLSKELGADYYVDM
SKDNYIQEIQSIGSVKCILATAPIASTVQGLLESLGINGKLVILAAFHEPFHADSLTMIG
GSKSIVGWASGDNRDSLDTLNFARNNNIKSLVNTFPWKKQMKLLKYGQAKFRH
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFB752 (VFB752Q) /CSM/VF/VFB7-C/VFB752Q.Seq.d/                       1988   0.0
VFK647 (VFK647Q) /CSM/VF/VFK6-B/VFK647Q.Seq.d/                       1966   0.0
VFJ126 (VFJ126Q) /CSM/VF/VFJ1-B/VFJ126Q.Seq.d/                       1959   0.0
VFI869 (VFI869Q) /CSM/VF/VFI8-C/VFI869Q.Seq.d/                       1959   0.0
VFO687 (VFO687Q) /CSM/VF/VFO6-D/VFO687Q.Seq.d/                       1953   0.0
VFB802 (VFB802Q) /CSM/VF/VFB8-A/VFB802Q.Seq.d/                       1443   0.0
VFD346 (VFD346Q) /CSM/VF/VFD3-B/VFD346Q.Seq.d/                       1423   0.0
SSL793 (SSL793Q) /CSM/SS/SSL7-D/SSL793Q.Seq.d/                       1346   0.0
VFH533 (VFH533Q) /CSM/VF/VFH5-B/VFH533Q.Seq.d/                       1304   0.0
VFM488 (VFM488Q) /CSM/VF/VFM4-D/VFM488Q.Seq.d/                       1298   0.0
own update 2001.12. 4
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.  1215  0.0  11
AC115594|AC115594.2 Dictyostelium discoideum chromosome 2 map 4071862-4101005 strain AX4, complete sequence.   113  3e-47  8
AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.   113  8e-41  10
AF145986|AF145986.1 Pseudotsuga menziesii clone 2 cinnamyl alcohol dehydrogenase (CAD) gene, partial cds.    48  0.003  2
AF145985|AF145985.1 Pseudotsuga menziesii clone 1 cinnamyl alcohol dehydrogenase (CAD) gene, partial cds.    48  0.003  2
BG128445|BG128445.1 EST474091 tomato shoot/meristem Lycopersicon esculentum cDNA clone cTOF20D10 5' sequence, mRNA sequence.    50  0.058  1
BF051619|BF051619.1 EST436849 tomato developing/immature green fruit Lycopersicon esculentum cDNA clone cLEM23L21 5' sequence, mRNA sequence.    50  0.058  1
BI927384|BI927384.1 EST547273 tomato flower, 3 - 8 mm buds Lycopersicon esculentum cDNA clone cTOB22K5 5' end, mRNA sequence.    50  0.058  1
AW648829|AW648829.1 EST327283 tomato germinating seedlings, TAMU Lycopersicon esculentum cDNA clone cLEI6E1 5', mRNA sequence.    50  0.058  1
BG130266|BG130266.1 EST475912 tomato shoot/meristem Lycopersicon esculentum cDNA clone cTOF29F6 5' sequence, mRNA sequence.    50  0.058  1
dna update 2003. 9. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116984_6(AC116984|pid:none) Dictyostelium discoideum chromosom...   420   e-172
AC116984_84(AC116984|pid:none) Dictyostelium discoideum chromoso...   305   e-120
AC117072_38(AC117072|pid:none) Dictyostelium discoideum chromoso...   292   e-113
CP001053_1640(CP001053|pid:none) Burkholderia phytofirmans PsJN ...   191   9e-65
CP000271_1921(CP000271|pid:none) Burkholderia xenovorans LB400 c...   188   2e-64
CP000360_3040(CP000360|pid:none) Acidobacteria bacterium Ellin34...   167   8e-61
AY596296_262(AY596296|pid:none) Haloarcula marismortui ATCC 4304...   180   8e-60
CP000159_2251(CP000159|pid:none) Salinibacter ruber DSM 13855, c...   181   3e-59
CP000721_3789(CP000721|pid:none) Clostridium beijerinckii NCIMB ...   178   3e-58
AM747722_76(AM747722|pid:none) Burkholderia cenocepacia J2315 ch...   168   1e-54
protein update 2009. 7.10
PSORT 

 psg: 0.81  gvh: 0.39  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.36  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 28.0 %: nuclear
	 16.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: vacuolar
	  4.0 %: peroxisomal

>> prediction for VFB752 is cyt
5' end seq. ID VFB752F
5' end seq. 
>VFB752F.Seq
AAAAAAAATAGCTAAAAAATAAAAATTAATTGTATTAATACAAATATATATAAATAAAAT
GACAAAAACAACAATGAAAGCAGCAGCATTTACACAGAAGAATGGTAAAATAGAGATTAT
TGAGTTACCAATCCCAGAACCAACTCAAGGTTGGATTAGAATTAAAGTTCACGCCTGTGG
TGTTTGTCAAGGTGAAAATGTTTGTAAACATGGTGTAATGGGTAATTCATTTCCAAGAGT
TCCAGGACATGAGGTTGTAGGTGAAATTGATAAATTAGGAGAAGGTGTTTGTAATGAAGA
ATATAAAATTGGTGAATTTGTAGGTGTTGGTTGGTTTGGTGGTAATCAATGTGGTAAATG
TGAAACATGTTTAGAGAATGAATGGAAACATTGTAAGAAAGTAAACACTTGTGGTGTTAC
TTATGATGGTGGTTATGCAGAGTATATGATTGCACCAATTAGTGCACTTGTTAAAATACC
AAAAGGAATGGACCCACTTGAAGCTGCACCATTGTTATGTGCAGGTGTAACAGTTTATAA
TTCATTTAGACATCAAGACATTAAAGTAGGTTCATTGGTTGGTGTTACAGGTATTGGTG-
---------
Length of 5' end seq. 599
3' end seq. ID VFB752Z
3' end seq. 
>VFB752Z.Seq
----------AGAATGAATGGAAACATTGTAAGAAAAGTAAACACTTGTGGTGTTACTTA
TGATGGTGGTTATGCAGAGTATATGATTGCACCAATTAGTGCACTTGTTAAAATACCAAA
AGGAATGGACCCACTTGAAGCTGCACCATTGTTATGTGCAGGTGTAACAGTTTATAATTC
ATTTAGACATCAAGACATTAAAGTAGGTTCATTGGTTGGTGTTACAGGTATTGGTGGTTT
AGGTCATTATGCAATTCAATTCTGTAAGAAAATGGGTTACCAAGTGATTGCAATGTCAAG
TGGTAATTCAAAAGAACAACTCTCAAAAGAATTGGGTGCAGATTATTATGTTGATATGTC
AAAGGATAATTACATTCAAGAGATTCAATCAATTGGTTCAGTTAAATGTATTTTAGCAAC
TGCACCAATTGCATCAACTGTTCAAGGTTTATTAGAGTCTTTAGGTATAAATGGTAAATT
GGTGATTTTGGCTGCTTTCCATGAACCATTCCATGCAGATTCATTGACAATGATTGGTGG
TTCTAAATCAATCGTTGGTTGGGCTTCTGGTGATAATCGTGATTCTCTTGATACTTTAAA
TTTTGCTCGTAATAATAATATTAAATCATTAGTAAATACTTTCCCATGGAAAAAGCAAAT
GAAGCTTTTAAAATATGGTCAAGCAAAATTTAGACATGT
Length of 3' end seq. 689
Connected seq. ID VFB752P
Connected seq. 
>VFB752P.Seq
AAAAAAAATAGCTAAAAAATAAAAATTAATTGTATTAATACAAATATATATAAATAAAAT
GACAAAAACAACAATGAAAGCAGCAGCATTTACACAGAAGAATGGTAAAATAGAGATTAT
TGAGTTACCAATCCCAGAACCAACTCAAGGTTGGATTAGAATTAAAGTTCACGCCTGTGG
TGTTTGTCAAGGTGAAAATGTTTGTAAACATGGTGTAATGGGTAATTCATTTCCAAGAGT
TCCAGGACATGAGGTTGTAGGTGAAATTGATAAATTAGGAGAAGGTGTTTGTAATGAAGA
ATATAAAATTGGTGAATTTGTAGGTGTTGGTTGGTTTGGTGGTAATCAATGTGGTAAATG
TGAAACATGTTTAGAGAATGAATGGAAACATTGTAAGAAAGTAAACACTTGTGGTGTTAC
TTATGATGGTGGTTATGCAGAGTATATGATTGCACCAATTAGTGCACTTGTTAAAATACC
AAAAGGAATGGACCCACTTGAAGCTGCACCATTGTTATGTGCAGGTGTAACAGTTTATAA
TTCATTTAGACATCAAGACATTAAAGTAGGTTCATTGGTTGGTGTTACAGGTATTGGTG-
---------AGAATGAATGGAAACATTGTAAGAAAAGTAAACACTTGTGGTGTTACTTAT
GATGGTGGTTATGCAGAGTATATGATTGCACCAATTAGTGCACTTGTTAAAATACCAAAA
GGAATGGACCCACTTGAAGCTGCACCATTGTTATGTGCAGGTGTAACAGTTTATAATTCA
TTTAGACATCAAGACATTAAAGTAGGTTCATTGGTTGGTGTTACAGGTATTGGTGGTTTA
GGTCATTATGCAATTCAATTCTGTAAGAAAATGGGTTACCAAGTGATTGCAATGTCAAGT
GGTAATTCAAAAGAACAACTCTCAAAAGAATTGGGTGCAGATTATTATGTTGATATGTCA
AAGGATAATTACATTCAAGAGATTCAATCAATTGGTTCAGTTAAATGTATTTTAGCAACT
GCACCAATTGCATCAACTGTTCAAGGTTTATTAGAGTCTTTAGGTATAAATGGTAAATTG
GTGATTTTGGCTGCTTTCCATGAACCATTCCATGCAGATTCATTGACAATGATTGGTGGT
TCTAAATCAATCGTTGGTTGGGCTTCTGGTGATAATCGTGATTCTCTTGATACTTTAAAT
TTTGCTCGTAATAATAATATTAAATCATTAGTAAATACTTTCCCATGGAAAAAGCAAATG
AAGCTTTTAAAATATGGTCAAGCAAAATTTAGACATGT
Length of connected seq. 1288
Full length Seq ID VFB752E
Full length Seq. 
>VFB752E.Seq
AAAAAAAATAGCTAAAAAATAAAAATTAATTGTATTAATACAAATATATATAAATAAAAT
GACAAAAACAACAATGAAAGCAGCAGCATTTACACAGAAGAATGGTAAAATAGAGATTAT
TGAGTTACCAATCCCAGAACCAACTCAAGGTTGGATTAGAATTAAAGTTCACGCCTGTGG
TGTTTGTCAAGGTGAAAATGTTTGTAAACATGGTGTAATGGGTAATTCATTTCCAAGAGT
TCCAGGACATGAGGTTGTAGGTGAAATTGATAAATTAGGAGAAGGTGTTTGTAATGAAGA
ATATAAAATTGGTGAATTTGTAGGTGTTGGTTGGTTTGGTGGTAATCAATGTGGTAAATG
TGAAACATGTTTAGAGAATGAATGGAAACATTGTAAGAAAAGTAAACACTTGTGGTGTTA
CTTATGATGGTGGTTATGCAGAGTATATGATTGCACCAATTAGTGCACTTGTTAAAATAC
CAAAAGGAATGGACCCACTTGAAGCTGCACCATTGTTATGTGCAGGTGTAACAGTTTATA
ATTCATTTAGACATCAAGACATTAAAGTAGGTTCATTGGTTGGTGTTACAGGTATTGGTG
GTTTAGGTCATTATGCAATTCAATTCTGTAAGAAAATGGGTTACCAAGTGATTGCAATGT
CAAGTGGTAATTCAAAAGAACAACTCTCAAAAGAATTGGGTGCAGATTATTATGTTGATA
TGTCAAAGGATAATTACATTCAAGAGATTCAATCAATTGGTTCAGTTAAATGTATTTTAG
CAACTGCACCAATTGCATCAACTGTTCAAGGTTTATTAGAGTCTTTAGGTATAAATGGTA
AATTGGTGATTTTGGCTGCTTTCCATGAACCATTCCATGCAGATTCATTGACAATGATTG
GTGGTTCTAAATCAATCGTTGGTTGGGCTTCTGGTGATAATCGTGATTCTCTTGATACTT
TAAATTTTGCTCGTAATAATAATATTAAATCATTAGTAAATACTTTCCCATGGAAAAAGC
AAATGAAGCTTTTAAAATATGGTCAAGCAAAATTTAGACATGT
Length of full length seq. 1063