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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFB751
Library VF
(Link to library)
Clone ID VFB751
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16480-1
Original site URL
Representative seq. ID VFB751P
(Link to Original site)
Representative DNA sequence 
>VFB751 (VFB751Q) /CSM/VF/VFB7-C/VFB751Q.Seq.d/
CACTGTTGGCCTACTGGNAAGTTACAGTCTGATTGATTATTTATCTCAAAATAAAAAATG
AGACTTTTATCTGNATTAGTATTTTTGATTNCAGTTATTTCCATTGCAAAAGCCNATTAC
CAATATGCTTTTTGXXXXXXXXXXACACTGCATCATCCTATTCAAATTTAGAGAATGCAA
TTGGTTTAGCAGTAGTTTACAANACTACCATCACCAAAGGTGATTACATTGAAGGTAGAG
TTTTATTCAAAGCACTCAATTCTTCATTCATTCAAGTATCTGCTAAAGTTTCCGGTTTAT
CTTATCAAGCTCATGGTTTCCATGTTCATCAATTTGGTGATGTTTCATCGGATAATGGTA
CTTCAATTGGTGGTCATTTCTTAAAGACTGGTCAAGAACATTCTCTCCCACCATCTGGAA
CTAGACATTATGGTGATTTTGGTAATTTCTGTGCTTTCTCTCAANATATGATGGATACTG
GTTACTATTATTATGAGACTGATCATGTCACTGCCGCTTTAGTCATTGGTANAGGTATGG
CCGTTCATAACTTNACTGATAAAGGTAATAGTGATGTTGGTGGTTCTCGTTGTGGTCAAG
GTGTCATTGCTNNAATTCAAGATGCTGATCACAGTTTAAATCTTCCAATGGATTGGAAAT
NGGATGTCATTTGTGCAAATGGTTCANACTATGGTGATATGTCA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
llaywxvtv*LIIYLKIKNETFIXISIFDXSYFHCKSXLPICFL---

---TASSYSNLENAIGLAVVYXTTITKGDYIEGRVLFKALNSSFIQVSAKVSGLSYQAHG
FHVHQFGDVSSDNGTSIGGHFLKTGQEHSLPPSGTRHYGDFGNFCAFSQXMMDTGYYYYE
TDHVTAALVIGXGMAVHNXTDKGNSDVGGSRCGQGVIAXIQDADHSLNLPMDWKXDVICA
NGSXYGDMS
Translated Amino Acid sequence (All Frames) 
Frame A:
hcwptgklqsd*lfisk*kmrllsxlvflixvisiakaxyqyaf---

---tlhhpiqi*rmqlv*q*ftxlpspkvitlkvefyskhsilhsfkyllkfpvyliklm
vsmfinlvmfhrimvlqlvvis*rlvknilshhleldimvilvisvlslxi*wilvtiim
rlimslpl*slvxvwpfitxlikvivmlvvlvvvkvsllxfkmlitv*ifqwignxmsfv
qmvxtmvic

Frame B:
tvgllxsyslidylsqnkk*dfylx*yf*xqlfplqkpitnmlf---

---hciilfkfrecnwfssslqxyhhqr*lh*r*sfiqstqffihssic*sfrfilsssw
fpcssiw*cfig*wyfnwwsflkdwsrtfsptiwn*tlw*fw*flcflsxydgywllll*
d*schcrfshwxrygrs*lx**r***cwwfslwsrchcxnsrc*sqfkssnglexgchlc
kwfxlw*yv

Frame C:
llaywxvtv*LIIYLKIKNETFIXISIFDXSYFHCKSXLPICFL---

---TASSYSNLENAIGLAVVYXTTITKGDYIEGRVLFKALNSSFIQVSAKVSGLSYQAHG
FHVHQFGDVSSDNGTSIGGHFLKTGQEHSLPPSGTRHYGDFGNFCAFSQXMMDTGYYYYE
TDHVTAALVIGXGMAVHNXTDKGNSDVGGSRCGQGVIAXIQDADHSLNLPMDWKXDVICA
NGSXYGDMS
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFB751 (VFB751Q) /CSM/VF/VFB7-C/VFB751Q.Seq.d/                       1265   0.0
VFL312 (VFL312Q) /CSM/VF/VFL3-A/VFL312Q.Seq.d/                       1061   0.0
VHK773 (VHK773Q) /CSM/VH/VHK7-D/VHK773Q.Seq.d/                       1055   0.0
VFO783 (VFO783Q) /CSM/VF/VFO7-D/VFO783Q.Seq.d/                       1055   0.0
VFM834 (VFM834Q) /CSM/VF/VFM8-B/VFM834Q.Seq.d/                       1055   0.0
VFL863 (VFL863Q) /CSM/VF/VFL8-C/VFL863Q.Seq.d/                       1055   0.0
VFL780 (VFL780Q) /CSM/VF/VFL7-D/VFL780Q.Seq.d/                       1055   0.0
VFL327 (VFL327Q) /CSM/VF/VFL3-B/VFL327Q.Seq.d/                       1055   0.0
VFL248 (VFL248Q) /CSM/VF/VFL2-B/VFL248Q.Seq.d/                       1055   0.0
VFJ439 (VFJ439Q) /CSM/VF/VFJ4-B/VFJ439Q.Seq.d/                       1055   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BM394361|BM394361.1 50072-2-3-D09.f.1 Chilcoat/Turkewitz cDNA (large fraction) Tetrahymena thermophila cDNA, mRNA sequence.    54  0.002  1
BM392933|BM392933.1 50071-2-3-D09.f.1 Chilcoat/Turkewitz cDNA (small fraction) Tetrahymena thermophila cDNA, mRNA sequence.    54  0.002  1
BU722666|SODC_SCHMA SUPEROXIDE DISMUTASE [CU-ZN], mRNA sequence.    52  0.010  1
BU794891|SODC_SCHMA SUPEROXIDE DISMUTASE [CU-ZN], mRNA sequence.    52  0.010  1
BU724417|SODC_SCHMA SUPEROXIDE DISMUTASE [CU-ZN], mRNA sequence.    52  0.010  1
AF046872|AF046872.1 Candida albicans Cu,Zn-superoxide dismutase (sod1) gene, complete cds.    46  0.60  1
AC127019|AC127019.18 Medicago truncatula clone mth2-31b1, WORKING DRAFT SEQUENCE, 13 unordered pieces.    38  1.0  3
AC069542|AC069542.7 Homo sapiens chromosome 10 clone RP11-390B4, complete sequence.    42  1.2  3
AC068897|AC068897.1 Homo sapiens chromosome CHROM 10 clone RP11-498K22, WORKING DRAFT SEQUENCE, 80 unordered pieces.    42  1.8  2
AC087320|AC087320.16 Homo sapiens 12p BAC RP11-818E15 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    44  2.4  1
dna update 2003. 9. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54RQ1) RecName: Full=Extracellular superoxide dismutase [Cu-Zn...   367   e-100
(Q54RN1) RecName: Full=Extracellular superoxide dismutase [Cu-Zn...   149   6e-35
CP000828_5114(CP000828|pid:none) Acaryochloris marina MBIC11017,...    80   8e-14
CP000269_1690(CP000269|pid:none) Janthinobacterium sp. Marseille...    77   7e-13
(Q54G70) RecName: Full=Superoxide dismutase [Cu-Zn] 5;          ...    73   7e-12
(P80566) RecName: Full=Superoxide dismutase [Cu-Zn];          EC...    73   1e-11
S65436(S65436)superoxide dismutase (EC 1.15.1.1) (Cu-Zn) - chicken     72   2e-11
CP000884_3926(CP000884|pid:none) Delftia acidovorans SPH-1, comp...    71   3e-11
EU158255_1(EU158255|pid:none) Diplodon chilensis superoxide dism...    70   6e-11
S29782(S29782)superoxide dismutase (EC 1.15.1.1) (Cu-Zn) - logge...    70   6e-11
protein update 2009. 6.17
PSORT 

 psg: 0.95  gvh: 0.53  alm: 0.43  top: 0.33  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	 16.0 %: extracellular, including cell wall
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for VFB751 is cyt
5' end seq. ID VFB751F
5' end seq. 
>VFB751F.Seq
CACTGTTGGCCTACTGGNAAGTTACAGTCTGATTGATTATTTATCTCAAAATAAAAAATG
AGACTTTTATCTGNATTAGTATTTTTGATTNCAGTTATTTCCATTGCAAAAGCCNATTAC
CAATATGCTTTTTG----------
Length of 5' end seq. 134
3' end seq. ID VFB751Z
3' end seq. 
>VFB751Z.Seq
----------ACACTGCATCATCCTATTCAAATTTAGAGAATGCAATTGGTTTAGCAGTA
GTTTACAANACTACCATCACCAAAGGTGATTACATTGAAGGTAGAGTTTTATTCAAAGCA
CTCAATTCTTCATTCATTCAAGTATCTGCTAAAGTTTCCGGTTTATCTTATCAAGCTCAT
GGTTTCCATGTTCATCAATTTGGTGATGTTTCATCGGATAATGGTACTTCAATTGGTGGT
CATTTCTTAAAGACTGGTCAAGAACATTCTCTCCCACCATCTGGAACTAGACATTATGGT
GATTTTGGTAATTTCTGTGCTTTCTCTCAANATATGATGGATACTGGTTACTATTATTAT
GAGACTGATCATGTCACTGCCGCTTTAGTCATTGGTANAGGTATGGCCGTTCATAACTTN
ACTGATAAAGGTAATAGTGATGTTGGTGGTTCTCGTTGTGGTCAAGGTGTCATTGCTNNA
ATTCAAGATGCTGATCACAGTTTAAATCTTCCAATGGATTGGAAATNGGATGTCATTTGT
GCAAATGGTTCANACTATGGTGATATGTCA
Length of 3' end seq. 560
Connected seq. ID VFB751P
Connected seq. 
>VFB751P.Seq
CACTGTTGGCCTACTGGNAAGTTACAGTCTGATTGATTATTTATCTCAAAATAAAAAATG
AGACTTTTATCTGNATTAGTATTTTTGATTNCAGTTATTTCCATTGCAAAAGCCNATTAC
CAATATGCTTTTTG----------ACACTGCATCATCCTATTCAAATTTAGAGAATGCAA
TTGGTTTAGCAGTAGTTTACAANACTACCATCACCAAAGGTGATTACATTGAAGGTAGAG
TTTTATTCAAAGCACTCAATTCTTCATTCATTCAAGTATCTGCTAAAGTTTCCGGTTTAT
CTTATCAAGCTCATGGTTTCCATGTTCATCAATTTGGTGATGTTTCATCGGATAATGGTA
CTTCAATTGGTGGTCATTTCTTAAAGACTGGTCAAGAACATTCTCTCCCACCATCTGGAA
CTAGACATTATGGTGATTTTGGTAATTTCTGTGCTTTCTCTCAANATATGATGGATACTG
GTTACTATTATTATGAGACTGATCATGTCACTGCCGCTTTAGTCATTGGTANAGGTATGG
CCGTTCATAACTTNACTGATAAAGGTAATAGTGATGTTGGTGGTTCTCGTTGTGGTCAAG
GTGTCATTGCTNNAATTCAAGATGCTGATCACAGTTTAAATCTTCCAATGGATTGGAAAT
NGGATGTCATTTGTGCAAATGGTTCANACTATGGTGATATGTCA
Length of connected seq. 694
Full length Seq ID -
Full length Seq. -
Length of full length seq. -