VFB741
Library VF
(Link to library)
Clone ID VFB741
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16382-1
Original site URL
Representative seq. ID VFB741P
(Link to Original site)
Representative DNA sequence
>VFB741 (VFB741Q) /CSM/VF/VFB7-B/VFB741Q.Seq.d/
AATACTTAATTCAAATATATATATATAAATCATTTAAAAATGGACGGTGAAGATGTTCAA
GCTTTAGTTATCGATAACGGTTCTGGTATGTGTAAAGCCGGTTTTGCTGGTGATGATGCC
CCACGTGCTGTTTTCCCATCAATTGTTGGTCGTCCAAGACACACTGGTGTTATGGTCGGT
ATGGGTCAAAAAGACTCATATGTAGGTGATGAAGCCCAATCAAAGAGAGGTATCTTAACC
CTCAAATACCCAATTGAACACGGTATCGTTACCAACTGGGATGATATGGAAAAAATCTGG
CATCATACTTTCTACAATGAACTCCGTGTTGCCCCAGAAGAACACCCAGTTCTCTTAACT
GAAGCCCCATTAAATCCAAAGGCCAACAGAGAAAAAATGACCCAAATTATGTTTGAAACC
TTCAACACCCCAGCCATGTACGTCGCCATTCAAGCCGTCTTATCCTTATATGCCTCTGGT
CGTACCACCGGTATTGTTATGGATTCAGGTGATGGTGTCTCCCACACTGTACCAATCTAT
GAAGGXXXXXXXXXXTCCCACACTGTACCAATCTATGAAGGTTATGCTTTACCACATGCC
ATCTTACGTTTAGATTTAGGCTGGTCGTGATCTTACCGATTACATGATGAAAATCTTAAC
TGAACGTGGTTACTCATTCACCACCACTGCCGAAAGAGAAATCGTCAGAGATATCAAAGA
AAAATTAGCCTACGTCGCCCTCGACTTTGAAGCTGAAATGCAAACTGCTGCCTCATCATC
AGCCCTCGAAAAATCATACGAATTACCAGACGGTCAAGTCATCACCATCGGTAATGAACG
TTTCCGTTGCCCAGAAGCCCTCTTCCAACCATCATTCTTAGGTATGGAATCTGCTGGTAT
CCACGAAACCACCTACAACTCCATCATGAAATGTGATGTTGATATCCGTAAAGATTTATA
CGGTAACGTCGTCTTATCCGGTGGTACAACTATGTTCCCAGGTATTGCTGATCGTATGAA
CAAAGAATTAACTGCTTTAGCCCCATCAACCATGAAAATTAAAATCATTGCTCCACCAGA
ACGTAAATACTCTGTCTGGATTGGTGGATCTATCTTAGCTTCACTCTCAACTTTCCAACA
AATGTGGATCTCCAAAGAAGAATACGACGAATCAGGTCCATCAATTGTTCACAGAAAATG
TTTCTAAATTATTAATAAAAATAAAAAAAC
sequence update 2001. 6. 1
Translated Amino Acid sequence
nt*FKYIYINHLKMDGEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVG
MGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLT
EAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIY
E---

---SHTVPIYEGYALPHAILRLDLGWS*syrlhdenln*twllihhhcrkrnrqryqrki
slrrprl*s*nanccliisprkiiritrrsshhhr**tfplprsplptiilrygicwypr
nhlqlhhem*c*yp*rfir*rrlirwynyvpryc*syeqrincfspinhen*nhcstrt*
ilcldwwiylsftlnfptnvdlqrrirrirsincsqkmflny**k*kn


Translated Amino Acid sequence (All Frames)
Frame A:
nt*FKYIYINHLKMDGEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVG
MGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLT
EAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIY
E---

---SHTVPIYEGYALPHAILRLDLGWS*syrlhdenln*twllihhhcrkrnrqryqrki
slrrprl*s*nanccliisprkiiritrrsshhhr**tfplprsplptiilrygicwypr
nhlqlhhem*c*yp*rfir*rrlirwynyvpryc*syeqrincfspinhen*nhcstrt*
ilcldwwiylsftlnfptnvdlqrrirrirsincsqkmflny**k*kn

Frame B:
ilnsniyi*ii*kwtvkmfkl*lsitvlvcvkpvllvmmphvlfshqllvvqdtlvlwsv
wvkkthm*vmkpnqrevs*psntqlntvslptgmiwkksgiilstmnsvlpqkntqfs*l
kph*iqrptekk*pklclkpstpqpctspfkpsypymplvvppvllwiqvmvsptlyqsm
k---

---ptlyqsmkvmlyhmpsyv*i*agrdltdymmkiltergysftttaereivrdikekl
ayvaldfeaemqtaasssaleksyelpdgqvitignerfrcpealfqpsflgmesagihe
ttynsimkcdvdirkdlygnvvlsggttmfpgiadrmnkeltalapstmkikiiapperk
ysvwiggsilaslstfqqmwiskeeydesgpsivhrkcf*iinknkk

Frame C:
yliqiyiyksfkngr*rcssfsyr*rfwyv*srfcw**cptccfpincwsskthwcygry
gskrlicr**spikerylnpqipn*tryryqlg*ygknlasyflq*tpccprrtpssln*
spikskgqqrkndpnyv*nlqhpshvrrhssrliliclwsyhrycygfr*wclphctnl*
r---

---phctnl*rlcfttchltfrfrlvvilpit**ks*lnvvthspplpkeksseiskkn*
ptspstlklkckllphhqpsknhtnyqtvksspsvmnvsvaqkpssnhhs*vwnllvstk
ppttps*nvmlisvkiytvtssypvvqlcsqvlliv*tkn*ll*phqp*klksllhqnvn
tlsglvdls*lhsqlsnkcgspkknttnqvhqlftenvskllikikk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFB741 (VFB741Q) /CSM/VF/VFB7-B/VFB741Q.Seq.d/ 2298 0.0
VFL628 (VFL628Q) /CSM/VF/VFL6-B/VFL628Q.Seq.d/ 1294 0.0
VFL596 (VFL596Q) /CSM/VF/VFL5-D/VFL596Q.Seq.d/ 1294 0.0
VFL458 (VFL458Q) /CSM/VF/VFL4-C/VFL458Q.Seq.d/ 1294 0.0
VFL313 (VFL313Q) /CSM/VF/VFL3-A/VFL313Q.Seq.d/ 1294 0.0
VFL155 (VFL155Q) /CSM/VF/VFL1-C/VFL155Q.Seq.d/ 1294 0.0
VFK736 (VFK736Q) /CSM/VF/VFK7-B/VFK736Q.Seq.d/ 1294 0.0
VFI775 (VFI775Q) /CSM/VF/VFI7-D/VFI775Q.Seq.d/ 1294 0.0
VFI660 (VFI660Q) /CSM/VF/VFI6-C/VFI660Q.Seq.d/ 1294 0.0
VFI542 (VFI542Q) /CSM/VF/VFI5-B/VFI542Q.Seq.d/ 1294 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X03281|X03281.1 Dictyostelium discoideum gene for actin A8. 1166 0.0 2
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 1112 0.0 4
M14146|M14146.1 D.discoideum actin 15 gene, complete cds. 1043 0.0 2
AC115579|AC115579.2 Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence. 1043 0.0 4
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 969 0.0 5
U25660|U25660.1 Dictyostelium discoideum actin gene, partial cds. 910 0.0 2
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 902 0.0 15
X03282|X03282.1 dictyostelium discoideum gene for actin A12. 850 0.0 2
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence. 850 0.0 6
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 726 0.0 4
dna update 2003. 9. 6
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54H30) RecName: Full=Major actin; AltName: Full=Actin-1; AltNa... 390 0.0
(Q553U6) RecName: Full=Putative actin-22; &AC116305_3(AC116305|... 386 0.0
B23412(B23412)actin 12 - slime mold (Dictyostelium discoideum) 390 0.0
ATDO(A93223;A92871;S67999;A03004)actin - slime mold (Dictyosteli... 386 0.0
(P02576) RecName: Full=Actin, plasmodial isoform; &ATFY(A29044;... 385 0.0
X03282_1(X03282|pid:none) dictyostelium discoideum gene for acti... 390 0.0
(P07829) RecName: Full=Actin-3; AltName: Full=Actin-3-sub 1; 383 0.0
AY294154_1(AY294154|pid:none) Thecamoeba similis actin mRNA, com... 379 0.0
(P02578) RecName: Full=Actin-1; &ATAX(A92886;A03004) &V00002_1(... 378 0.0
AF082863_1(AF082863|pid:none) Dreissena polymorpha cytoplasmic a... 373 0.0
protein update 2009. 6.17
PSORT

psg: 0.53 gvh: 0.34 alm: 0.42 top: 0.53 tms: 0.00 mit: 0.17 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
40.0 %: nuclear
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for VFB741 is cyt

5' end seq. ID VFB741F
5' end seq.
>VFB741F.Seq
AATACTTAATTCAAATATATATATATAAATCATTTAAAAATGGACGGTGAAGATGTTCAA
GCTTTAGTTATCGATAACGGTTCTGGTATGTGTAAAGCCGGTTTTGCTGGTGATGATGCC
CCACGTGCTGTTTTCCCATCAATTGTTGGTCGTCCAAGACACACTGGTGTTATGGTCGGT
ATGGGTCAAAAAGACTCATATGTAGGTGATGAAGCCCAATCAAAGAGAGGTATCTTAACC
CTCAAATACCCAATTGAACACGGTATCGTTACCAACTGGGATGATATGGAAAAAATCTGG
CATCATACTTTCTACAATGAACTCCGTGTTGCCCCAGAAGAACACCCAGTTCTCTTAACT
GAAGCCCCATTAAATCCAAAGGCCAACAGAGAAAAAATGACCCAAATTATGTTTGAAACC
TTCAACACCCCAGCCATGTACGTCGCCATTCAAGCCGTCTTATCCTTATATGCCTCTGGT
CGTACCACCGGTATTGTTATGGATTCAGGTGATGGTGTCTCCCACACTGTACCAATCTAT
GAAGG----------
Length of 5' end seq. 545
3' end seq. ID VFB741Z
3' end seq.
>VFB741Z.Seq
----------TCCCACACTGTACCAATCTATGAAGGTTATGCTTTACCACATGCCATCTT
ACGTTTAGATTTAGGCTGGTCGTGATCTTACCGATTACATGATGAAAATCTTAACTGAAC
GTGGTTACTCATTCACCACCACTGCCGAAAGAGAAATCGTCAGAGATATCAAAGAAAAAT
TAGCCTACGTCGCCCTCGACTTTGAAGCTGAAATGCAAACTGCTGCCTCATCATCAGCCC
TCGAAAAATCATACGAATTACCAGACGGTCAAGTCATCACCATCGGTAATGAACGTTTCC
GTTGCCCAGAAGCCCTCTTCCAACCATCATTCTTAGGTATGGAATCTGCTGGTATCCACG
AAACCACCTACAACTCCATCATGAAATGTGATGTTGATATCCGTAAAGATTTATACGGTA
ACGTCGTCTTATCCGGTGGTACAACTATGTTCCCAGGTATTGCTGATCGTATGAACAAAG
AATTAACTGCTTTAGCCCCATCAACCATGAAAATTAAAATCATTGCTCCACCAGAACGTA
AATACTCTGTCTGGATTGGTGGATCTATCTTAGCTTCACTCTCAACTTTCCAACAAATGT
GGATCTCCAAAGAAGAATACGACGAATCAGGTCCATCAATTGTTCACAGAAAATGTTTCT
AAATTATTAATAAAAATAAAAAAAC
Length of 3' end seq. 675
Connected seq. ID VFB741P
Connected seq.
>VFB741P.Seq
AATACTTAATTCAAATATATATATATAAATCATTTAAAAATGGACGGTGAAGATGTTCAA
GCTTTAGTTATCGATAACGGTTCTGGTATGTGTAAAGCCGGTTTTGCTGGTGATGATGCC
CCACGTGCTGTTTTCCCATCAATTGTTGGTCGTCCAAGACACACTGGTGTTATGGTCGGT
ATGGGTCAAAAAGACTCATATGTAGGTGATGAAGCCCAATCAAAGAGAGGTATCTTAACC
CTCAAATACCCAATTGAACACGGTATCGTTACCAACTGGGATGATATGGAAAAAATCTGG
CATCATACTTTCTACAATGAACTCCGTGTTGCCCCAGAAGAACACCCAGTTCTCTTAACT
GAAGCCCCATTAAATCCAAAGGCCAACAGAGAAAAAATGACCCAAATTATGTTTGAAACC
TTCAACACCCCAGCCATGTACGTCGCCATTCAAGCCGTCTTATCCTTATATGCCTCTGGT
CGTACCACCGGTATTGTTATGGATTCAGGTGATGGTGTCTCCCACACTGTACCAATCTAT
GAAGG----------TCCCACACTGTACCAATCTATGAAGGTTATGCTTTACCACATGCC
ATCTTACGTTTAGATTTAGGCTGGTCGTGATCTTACCGATTACATGATGAAAATCTTAAC
TGAACGTGGTTACTCATTCACCACCACTGCCGAAAGAGAAATCGTCAGAGATATCAAAGA
AAAATTAGCCTACGTCGCCCTCGACTTTGAAGCTGAAATGCAAACTGCTGCCTCATCATC
AGCCCTCGAAAAATCATACGAATTACCAGACGGTCAAGTCATCACCATCGGTAATGAACG
TTTCCGTTGCCCAGAAGCCCTCTTCCAACCATCATTCTTAGGTATGGAATCTGCTGGTAT
CCACGAAACCACCTACAACTCCATCATGAAATGTGATGTTGATATCCGTAAAGATTTATA
CGGTAACGTCGTCTTATCCGGTGGTACAACTATGTTCCCAGGTATTGCTGATCGTATGAA
CAAAGAATTAACTGCTTTAGCCCCATCAACCATGAAAATTAAAATCATTGCTCCACCAGA
ACGTAAATACTCTGTCTGGATTGGTGGATCTATCTTAGCTTCACTCTCAACTTTCCAACA
AATGTGGATCTCCAAAGAAGAATACGACGAATCAGGTCCATCAATTGTTCACAGAAAATG
TTTCTAAATTATTAATAAAAATAAAAAAAC
Length of connected seq. 1220
Full length Seq ID -
Full length Seq. -
Length of full length seq. -