VFB737
Library VF
(Link to library)
Clone ID VFB737
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10362-1
Original site URL
Representative seq. ID VFB737Z
(Link to Original site)
Representative DNA sequence
>VFB737 (VFB737Q) /CSM/VF/VFB7-B/VFB737Q.Seq.d/
XXXXXXXXXXANCAAAGANTATTAGTTAGTGCTAAAGTTGTAACATTTAAAAGTATATCN
GATTCGATAGTTCAATTATTTCCACAATTTAAATTTAATNCAAATACTTTGAATAATGAA
GATCCTGAACCATTCATTTTCAACTTGAAATCAACTAAATTGGATAAATTAAATTTTGGA
CAATTCATACCA
sequence update 2001. 6. 1
Translated Amino Acid sequence
---QRXLVSAKVVTFKSISDSIVQLFPQFKFNXNTLNNEDPEPFIFNLKSTKLDKLNFGQ
FIP


Translated Amino Acid sequence (All Frames)
Frame A:
---xkxis*c*scni*kyixfdssiisti*i*xkyfe**rs*tihfqlein*ig*ikfwt
iht


Frame B:
---QRXLVSAKVVTFKSISDSIVQLFPQFKFNXNTLNNEDPEPFIFNLKSTKLDKLNFGQ
FIP


Frame C:
---kxy*lvlkl*hlkvyxir*fnyfhnlnlxqil*imkilnhsfst*nqlnwin*ildn
sy


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFB737 (VFB737Q) /CSM/VF/VFB7-B/VFB737Q.Seq.d/ 339 9e-93
VSH724 (VSH724Q) /CSM/VS/VSH7-A/VSH724Q.Seq.d/ 331 2e-90
VFN503 (VFN503Q) /CSM/VF/VFN5-A/VFN503Q.Seq.d/ 331 2e-90
VFI712 (VFI712Q) /CSM/VF/VFI7-A/VFI712Q.Seq.d/ 331 2e-90
VFD850 (VFD850Q) /CSM/VF/VFD8-C/VFD850Q.Seq.d/ 331 2e-90
VFN839 (VFN839Q) /CSM/VF/VFN8-B/VFN839Q.Seq.d/ 323 5e-88
VFO880 (VFO880Q) /CSM/VF/VFO8-D/VFO880Q.Seq.d/ 309 8e-84
VFA637 (VFA637Q) /CSM/VF/VFA6-B/VFA637Q.Seq.d/ 299 8e-81
VSI159 (VSI159Q) /CSM/VS/VSI1-C/VSI159Q.Seq.d/ 238 2e-62
VFB805 (VFB805Q) /CSM/VF/VFB8-A/VFB805Q.Seq.d/ 36 0.18

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence. 331 2e-87 1
AL929350|AL929350.3 Oryza sativa chromosome 12, . BAC OSJNBb0104J15 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice). 42 0.25 3
CD570708|CD570708.1 kb75e07.y1 Brugia malayi 2D L3 irradiated pAMP1 v2 Brugia malayi cDNA 5' similar to contains element MER28 repetitive element ;, mRNA sequence. 44 0.59 1
BX004838|BX004838.7 Zebrafish DNA sequence from clone DKEY-29N1. 36 0.94 4
AC079807|AC079807.5 Homo sapiens BAC clone RP11-760G15 from 2, complete sequence. 42 1.3 4
BF010233|BF010233.1 ss96c04.y1 Gm-c1064 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1064-1951 5' similar to TR:O64697 O64697 PUTATIVE CYTOCHROME P450 PROTEIN. ;, mRNA sequence. 38 1.5 2
BQ630613|BQ630613.1 sap28g06.y1 Gm-c1082 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1082-4139 5' similar to TR:O64697 O64697 PUTATIVE CYTOCHROME P450 PROTEIN. ;, mRNA sequence. 38 1.6 2
BU080622|BU080622.1 saq26h07.y1 Gm-c1045 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1045-6110 5' similar to TR:O64697 O64697 PUTATIVE CYTOCHROME P450 PROTEIN. ;, mRNA sequence. 38 1.7 2
AW310494|AW310494.1 sf36h04.x1 Gm-c1028 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1028-2096 3' similar to TR:O64697 O64697 PUTATIVE CYTOCHROME P450 PROTEIN. ;, mRNA sequence. 38 2.0 2
BE823304|BE823304.1 GM700020B10H12 Gm-r1070 Glycine max cDNA clone Gm-r1070-8063 3', mRNA sequence. 38 2.1 2
dna update 2003. 9. 6
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 211,610,849
protein update 2009. 6.17
PSORT

psg: 0.81 gvh: 0.42 alm: 0.43 top: 0.53 tms: 0.00 mit: 0.38 mip: 0.02
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

32.0 %: cytoplasmic
32.0 %: nuclear
28.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: peroxisomal

>> prediction for VFB737 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VFB737Z
3' end seq.
>VFB737Z.Seq
----------ANCAAAGANTATTAGTTAGTGCTAAAGTTGTAACATTTAAAAGTATATCN
GATTCGATAGTTCAATTATTTCCACAATTTAAATTTAATNCAAATACTTTGAATAATGAA
GATCCTGAACCATTCATTTTCAACTTGAAATCAACTAAATTGGATAAATTAAATTTTGGA
CAATTCATACCA
Length of 3' end seq. 182
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -